Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of DNA-templated DNA replication
go back to main search page
Accession:GO:0090329 term browser browse the term
Definition:Any process that modulates the rate, frequency, or extent of DNA-templated DNA replication, the process in which new strands of DNA are synthesized.
Synonyms:exact_synonym: regulation of DNA-dependent DNA replication

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
regulation of DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase involved_in ISO (PMID:25901030) UniProt PMID:25901030 NCBI chrNW_004955416:14,814,753...14,899,865
Ensembl chrNW_004955416:14,842,033...14,899,687 		JBrowse link
negative regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbxo5 F-box protein 5 involved_in ISO (PMID:17875940) UniProt PMID:17875940 NCBI chrNW_004955439:8,830,658...8,843,653
Ensembl chrNW_004955439:8,830,975...8,843,828 		JBrowse link
negative regulation of DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdt1 chromatin licensing and DNA replication factor 1 involved_in ISO (PMID:19906994) ComplexPortal PMID:19906994 NCBI chrNW_004955541:2,683,030...2,687,883
Ensembl chrNW_004955541:2,683,408...2,687,102 		JBrowse link
G Gmnn geminin DNA replication inhibitor involved_in ISO (PMID:11125146), (PMID:19906994) CAFA PMID:11125146 PMID:19906994 NCBI chrNW_004955483:2,283,518...2,344,982
Ensembl chrNW_004955483:2,282,485...2,293,924 		JBrowse link
negative regulation of mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg7 autophagy related 7 ISO RGD PMID:23800874 RGD:11557986 NCBI chrNW_004955429:14,076,976...14,301,034
Ensembl chrNW_004955429:14,076,960...14,304,236 		JBrowse link
G Lig3 DNA ligase 3 involved_in ISO (PMID:21878356) CACAO PMID:21878356 NCBI chrNW_004955481:9,696,050...9,716,154
Ensembl chrNW_004955481:9,696,054...9,715,637 		JBrowse link
positive regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G E2f7 E2F transcription factor 7 involved_in ISO (MGI:5449497|PMID:23064266) UniProt PMID:23064266 MGI:5449497 NCBI chrNW_004955405:16,148,640...16,187,272
Ensembl chrNW_004955405:16,148,480...16,186,282 		JBrowse link
G E2f8 E2F transcription factor 8 involved_in ISO (MGI:5449497|PMID:23064266), (MGI:5449498|PMID:23064264) UniProt PMID:23064264 PMID:23064266 MGI:5449497 MGI:5449498 NCBI chrNW_004955476:197,699...215,227
Ensembl chrNW_004955476:197,630...213,441 		JBrowse link
positive regulation of DNA-directed DNA polymerase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chtf18 chromosome transmission fidelity factor 18 involved_in ISO (PMID:12930902) UniProt PMID:12930902 NCBI chrNW_004955442:16,414,564...16,423,386 JBrowse link
G Chtf8 chromosome transmission fidelity factor 8 involved_in ISO (PMID:12930902) UniProt PMID:12930902 NCBI chrNW_004955484:7,539,887...7,542,395 JBrowse link
G Dscc1 DNA replication and sister chromatid cohesion 1 involved_in ISO (PMID:12930902) UniProt PMID:12930902 NCBI chrNW_004955417:25,519,341...25,527,168 JBrowse link
G Gins1 GINS complex subunit 1 involved_in ISO (PMID:17170760) ComplexPortal PMID:17170760 NCBI chrNW_004955415:31,341,021...31,363,069
Ensembl chrNW_004955415:31,341,021...31,367,135 		JBrowse link
G Gins2 GINS complex subunit 2 involved_in ISO (PMID:17170760) ComplexPortal PMID:17170760 NCBI chrNW_004955541:809,079...816,807
Ensembl chrNW_004955541:809,079...816,807 		JBrowse link
G Gins3 GINS complex subunit 3 involved_in ISO (PMID:17170760) ComplexPortal PMID:17170760 NCBI chrNW_004955433:15,843,025...15,864,942
Ensembl chrNW_004955433:15,842,991...15,863,677 		JBrowse link
G Gins4 GINS complex subunit 4 involved_in ISO (PMID:17170760) ComplexPortal PMID:17170760 NCBI chrNW_004955536:1,360,811...1,375,691
Ensembl chrNW_004955536:1,360,811...1,375,712 		JBrowse link
G Npm1 nucleophosmin 1 ISO RGD PMID:8123045 RGD:11535022 NCBI chrNW_004955408:24,151,070...24,218,783 JBrowse link
G Pcna proliferating cell nuclear antigen involved_in ISO (PMID:11595739) UniProt PMID:11595739 NCBI chrNW_004955415:15,744,601...15,748,910
Ensembl chrNW_004955415:15,744,601...15,749,673 		JBrowse link
G Polg2 DNA polymerase gamma 2, accessory subunit involved_in ISO (PMID:10608893), (PMID:19837034), (PMID:19858216), (PMID:26123486) FlyBase PMID:10608893 PMID:19837034 PMID:19858216 PMID:26123486 NCBI chrNW_004955478:7,376,240...7,396,647
Ensembl chrNW_004955478:7,376,712...7,396,647 		JBrowse link
G Rfc2 replication factor C subunit 2 involved_in ISO (PMID:12930902) UniProt PMID:12930902 NCBI chrNW_004955456:13,659,122...13,671,405
Ensembl chrNW_004955456:13,659,157...13,671,181 		JBrowse link
G Rfc3 replication factor C subunit 3 involved_in ISO (PMID:12930902) UniProt PMID:12930902 NCBI chrNW_004955431:12,071,465...12,084,570
Ensembl chrNW_004955431:12,069,204...12,084,577 		JBrowse link
G Rfc4 replication factor C subunit 4 involved_in ISO (PMID:12930902) UniProt PMID:12930902 NCBI chrNW_004955420:20,948,549...20,967,845
Ensembl chrNW_004955420:20,948,549...20,967,845 		JBrowse link
G Rfc5 replication factor C subunit 5 involved_in ISO (PMID:12930902) UniProt PMID:12930902 NCBI chrNW_004955455:13,325,912...13,337,241
Ensembl chrNW_004955455:13,326,271...13,338,050 		JBrowse link
positive regulation of DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdt1 chromatin licensing and DNA replication factor 1 involved_in ISO (PMID:11125146) CAFA PMID:11125146 NCBI chrNW_004955541:2,683,030...2,687,883
Ensembl chrNW_004955541:2,683,408...2,687,102 		JBrowse link
positive regulation of DNA-templated DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 acts_upstream_of_or_within ISO (MGI:4439421|PMID:20215406) MGI PMID:20215406 MGI:4439421 NCBI chrNW_004955458:3,555,603...3,561,063
Ensembl chrNW_004955458:3,555,603...3,562,120 		JBrowse link
G Ciz1 CDKN1A interacting zinc finger protein 1 acts_upstream_of_or_within ISO (MGI:3513706|PMID:15585571)
(MGI:4439421|PMID:20215406)		 MGI PMID:15585571 PMID:20215406 MGI:3513706 MGI:4439421 NCBI chrNW_004955570:716,124...732,551
Ensembl chrNW_004955570:707,637...732,980 		JBrowse link
positive regulation of mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Endog endonuclease G involved_in ISO (PMID:29719607) UniProt PMID:29719607 NCBI chrNW_004955570:1,200,461...1,203,566
Ensembl chrNW_004955570:1,200,996...1,203,566 		JBrowse link
G Ssbp1 single stranded DNA binding protein 1 involved_in ISO (PMID:31550240) UniProt PMID:31550240 NCBI chrNW_004955494:1,807,885...1,826,375
Ensembl chrNW_004955494:1,814,106...1,826,375 		JBrowse link
positive regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (MGI:79015|PMID:2161540) MGI PMID:2161540 MGI:79015 NCBI chrNW_004955463:14,013,247...14,064,354
Ensembl chrNW_004955463:14,013,247...14,064,111 		JBrowse link
positive regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atrx ATRX chromatin remodeler involved_in ISO (MGI:5568153|PMID:24651726) UniProt PMID:24651726 MGI:5568153 NCBI chrNW_004955557:947,368...1,252,701
Ensembl chrNW_004955557:947,167...1,252,724 		JBrowse link
G Cdc7 cell division cycle 7 involved_in ISO (PMID:15668232) UniProt PMID:15668232 NCBI chrNW_004955423:2,902,352...2,923,743
Ensembl chrNW_004955423:2,902,048...2,924,573 		JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in ISO (PMID:20237820) UniProt PMID:20237820 NCBI chrNW_004955416:7,870,521...8,020,862
Ensembl chrNW_004955416:7,870,258...7,961,812 		JBrowse link
G Wiz WIZ zinc finger involved_in ISO (PMID:23545495) UniProt PMID:23545495 NCBI chrNW_004955495:7,810,145...7,834,908
Ensembl chrNW_004955495:7,811,804...7,833,918 		JBrowse link
regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Senp2 SUMO specific peptidase 2 acts_upstream_of_or_within ISO (MGI:3831588|PMID:19090619) MGI PMID:19090619 MGI:3831588 NCBI chrNW_004955420:21,969,537...22,005,094
Ensembl chrNW_004955420:21,969,537...22,005,856 		JBrowse link
regulation of DNA-templated DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdt1 chromatin licensing and DNA replication factor 1 involved_in ISO (PMID:11125146)
(MGI:2388867|PMID:12192004)		 UniProt PMID:11125146 PMID:12192004 MGI:2388867 NCBI chrNW_004955541:2,683,030...2,687,883
Ensembl chrNW_004955541:2,683,408...2,687,102 		JBrowse link
G Gmnn geminin DNA replication inhibitor involved_in ISO (PMID:24064211) ComplexPortal PMID:24064211 NCBI chrNW_004955483:2,283,518...2,344,982
Ensembl chrNW_004955483:2,282,485...2,293,924 		JBrowse link
G Kat7 lysine acetyltransferase 7 involved_in ISO (PMID:26620551) UniProt PMID:26620551 NCBI chrNW_004955451:11,770,201...11,802,992
Ensembl chrNW_004955451:11,770,201...11,802,992 		JBrowse link
G Mcidas multiciliate differentiation and DNA synthesis associated cell cycle protein involved_in ISO (PMID:24064211) ComplexPortal PMID:24064211 NCBI chrNW_004955446:12,438,737...12,445,254
Ensembl chrNW_004955446:12,438,737...12,445,254 		JBrowse link
G Ticrr TOPBP1 interacting checkpoint and replication regulator involved_in ISO (PMID:20116089) UniProt PMID:20116089 NCBI chrNW_004955416:15,572,789...15,615,556
Ensembl chrNW_004955416:15,572,331...15,615,603 		JBrowse link
G Wrnip1 WRN helicase interacting protein 1 involved_in ISO (PMID:15670210) UniProt PMID:15670210 NCBI chrNW_004955465:10,574,601...10,594,570
Ensembl chrNW_004955465:10,574,551...10,593,780 		JBrowse link
regulation of mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl4 methyltransferase 4, N6-adenosine involved_in ISO (PMID:32183942) UniProt PMID:32183942 NCBI chrNW_004955402:7,733,220...7,762,756
Ensembl chrNW_004955402:7,732,627...7,763,038 		JBrowse link
regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO (MGI:3583382|PMID:15980864) MGI PMID:15980864 MGI:3583382 NCBI chrNW_004955537:82,724...134,609
Ensembl chrNW_004955537:81,920...134,609 		JBrowse link
regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdt1 chromatin licensing and DNA replication factor 1 acts_upstream_of_or_within ISO (MGI:2159541|PMID:11850834) MGI PMID:11850834 MGI:2159541 NCBI chrNW_004955541:2,683,030...2,687,883
Ensembl chrNW_004955541:2,683,408...2,687,102 		JBrowse link
G Dach1 dachshund family transcription factor 1 involved_in ISO (MGI:5619482|PMID:16980615) CACAO PMID:16980615 MGI:5619482 NCBI chrNW_004955404:34,739,780...35,118,037
Ensembl chrNW_004955404:34,740,026...35,137,490 		JBrowse link
G Ilkap ILK associated serine/threonine phosphatase ISO RGD PMID:9857069 RGD:632254 NCBI chrNW_004955542:2,391,432...2,407,559
Ensembl chrNW_004955542:2,391,431...2,408,732 		JBrowse link
G Nuggc nuclear GTPase, germinal center associated involved_in ISO (PMID:19734146) UniProt PMID:19734146 NCBI chrNW_004955403:50,507,971...50,558,881
Ensembl chrNW_004955403:50,507,116...50,558,826 		JBrowse link
replication fork arrest term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slfn11 schlafen family member 11 involved_in ISO (PMID:29395061) UniProt PMID:29395061 NCBI chrNW_004955481:9,885,798...9,900,330 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12345
    metabolic process 7852
      regulation of metabolic process 5120
        regulation of macromolecule metabolic process 4460
          regulation of DNA metabolic process 449
            regulation of DNA replication 126
              regulation of DNA-templated DNA replication 42
                negative regulation of DNA-templated DNA replication + 6
                positive regulation of DNA-templated DNA replication + 12
                regulation of DNA endoreduplication + 4
                regulation of DNA replication termination + 0
                regulation of DNA-directed DNA polymerase activity + 14
                regulation of DNA-templated DNA replication initiation + 8
                regulation of mitochondrial DNA replication + 5
                regulation of nuclear cell cycle DNA replication + 10
                regulation of replication fork arrest at rDNA repeats 0
Path 2
Term Annotations click to browse term
  biological_process 12345
    metabolic process 7852
      organic substance metabolic process 7560
        organic cyclic compound metabolic process 2322
          nucleobase-containing compound metabolic process 1925
            nucleic acid metabolic process 1580
              DNA metabolic process 791
                regulation of DNA metabolic process 449
                  regulation of DNA replication 126
                    regulation of DNA-templated DNA replication 42
                      negative regulation of DNA-templated DNA replication + 6
                      positive regulation of DNA-templated DNA replication + 12
                      regulation of DNA endoreduplication + 4
                      regulation of DNA replication termination + 0
                      regulation of DNA-directed DNA polymerase activity + 14
                      regulation of DNA-templated DNA replication initiation + 8
                      regulation of mitochondrial DNA replication + 5
                      regulation of nuclear cell cycle DNA replication + 10
                      regulation of replication fork arrest at rDNA repeats 0
paths to the root