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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of DNA-templated DNA replication
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Accession:GO:0090329 term browser browse the term
Definition:Any process that modulates the rate, frequency, or extent of DNA-templated DNA replication, the process in which new strands of DNA are synthesized.
Synonyms:exact_synonym: regulation of DNA-dependent DNA replication


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regulation of DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:69,407,248...69,508,070
Ensembl chr15:88,607,157...88,707,864 		JBrowse link
negative regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBXO5 F-box protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:150,793,020...150,806,008
Ensembl chr 6:155,481,753...155,494,231 		JBrowse link
negative regulation of DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDT1 chromatin licensing and DNA replication factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:69,516,728...69,522,419
Ensembl chr16:89,174,071...89,177,823 		JBrowse link
G GMNN geminin DNA replication inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:24,612,864...24,624,010
Ensembl chr 6:24,944,377...24,955,575 		JBrowse link
negative regulation of mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG7 autophagy related 7 ISO RGD PMID:23800874 RGD:11557986 NCBI chr 3:11,208,600...11,488,757
Ensembl chr 3:11,554,100...11,833,398 		JBrowse link
G LIG3 DNA ligase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:21,776,483...21,805,706
Ensembl chr17:22,074,046...22,095,220 		JBrowse link
positive regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G E2F7 E2F transcription factor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:74,540,049...74,582,561
Ensembl chr12:77,388,950...77,433,262 		JBrowse link
G E2F8 E2F transcription factor 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:19,250,045...19,267,629
Ensembl chr11:19,162,837...19,179,744 		JBrowse link
positive regulation of DNA-directed DNA polymerase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHTF18 chromosome transmission fidelity factor 18 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:803,340...813,170 JBrowse link
G CHTF8 chromosome transmission fidelity factor 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:49,489,176...49,503,736
Ensembl chr16:68,877,028...68,891,513 		JBrowse link
G DSCC1 DNA replication and sister chromatid cohesion 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:116,524,249...116,546,178
Ensembl chr 8:119,272,490...119,294,342 		JBrowse link
G GINS1 GINS complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:25,352,711...25,393,926
Ensembl chr20:25,757,555...25,797,829 		JBrowse link
G GINS2 GINS complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:66,344,706...66,356,079
Ensembl chr16:85,681,716...85,691,626 		JBrowse link
G GINS3 GINS complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:38,653,876...38,672,154
Ensembl chr16:57,790,392...57,801,904 		JBrowse link
G GINS4 GINS complex subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:40,774,253...40,790,609
Ensembl chr 8:38,224,907...38,240,562 		JBrowse link
G NPM1 nucleophosmin 1 ISO RGD PMID:8123045 RGD:11535022 NCBI chr 5:166,735,904...166,756,321
Ensembl chr 5:173,490,197...173,510,656 		JBrowse link
G PCNA proliferating cell nuclear antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:5,134,930...5,146,603
Ensembl chr20:4,927,731...4,939,440 		JBrowse link
G POLG2 DNA polymerase gamma 2, accessory subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:58,574,442...58,593,915
Ensembl chr17:63,667,246...63,686,503 		JBrowse link
G RFC2 replication factor C subunit 2 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 7:81,378,937...81,401,937 JBrowse link
G RFC3 replication factor C subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:15,073,464...15,220,646
Ensembl chr13:33,503,439...33,523,403 		JBrowse link
G RFC4 replication factor C subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:183,824,865...183,841,895
Ensembl chr 3:192,290,639...192,307,839 		JBrowse link
G RFC5 replication factor C subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:115,595,398...115,611,442
Ensembl chr12:118,973,560...118,990,308 		JBrowse link
positive regulation of DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDT1 chromatin licensing and DNA replication factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:69,516,728...69,522,419
Ensembl chr16:89,174,071...89,177,823 		JBrowse link
positive regulation of DNA-templated DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK2 cyclin dependent kinase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4439421|PMID:20215406) MGI
Ensembl		 PMID:20215406 GO_REF:0000107 MGI:4439421 NCBI chr12:32,940,225...32,946,236
Ensembl chr12:33,189,934...33,195,945 		JBrowse link
G CIZ1 CDKN1A interacting zinc finger protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3513706|PMID:15585571)
(MGI:4439421|PMID:20215406)		 MGI
Ensembl		 PMID:15585571 PMID:20215406 GO_REF:0000107 MGI:3513706 MGI:4439421 NCBI chr 9:99,282,821...99,325,404
Ensembl chr 9:127,956,915...127,982,449 		JBrowse link
positive regulation of mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENDOG endonuclease G involved_in ISO (PMID:29719607) UniProt PMID:29719607 NCBI chr 9:99,941,856...99,945,957 JBrowse link
G SSBP1 single stranded DNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:133,670,085...133,682,228
Ensembl chr 7:146,139,837...146,151,495 		JBrowse link
positive regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGFR1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (MGI:79015|PMID:2161540) MGI PMID:2161540 MGI:79015 NCBI chr 8:37,713,133...37,773,098
Ensembl chr 8:34,890,147...34,948,904 		JBrowse link
positive regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATRX ATRX chromatin remodeler involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:66,682,968...66,969,421
Ensembl chr  X:76,795,574...77,083,486 		JBrowse link
G CDC7 cell division cycle 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:94,158,628...94,183,537
Ensembl chr 1:92,902,631...92,927,203 		JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:19,920,980...20,058,117
Ensembl chr15:38,170,982...38,307,311 		JBrowse link
G LOC100974927 protein DBF4 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:12,571,265...12,616,105
Ensembl chr17:12,744,297...12,790,089 		JBrowse link
G WIZ WIZ zinc finger involved_in ISO (PMID:23545495) UniProt PMID:23545495 NCBI chr19:14,952,948...14,981,300
Ensembl chr19:15,940,642...15,965,859 		JBrowse link
regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SENP2 SUMO specific peptidase 2 acts_upstream_of_or_within ISO (MGI:3831588|PMID:19090619) MGI PMID:19090619 MGI:3831588 NCBI chr 3:182,606,922...182,655,518
Ensembl chr 3:191,086,488...191,129,572 		JBrowse link
regulation of DNA-templated DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDT1 chromatin licensing and DNA replication factor 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr16:69,516,728...69,522,419
Ensembl chr16:89,174,071...89,177,823 		JBrowse link
G GMNN geminin DNA replication inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:24,612,864...24,624,010
Ensembl chr 6:24,944,377...24,955,575 		JBrowse link
G KAT7 lysine acetyltransferase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:43,875,921...43,916,352
Ensembl chr17:48,605,488...48,645,784 		JBrowse link
G MCIDAS multiciliate differentiation and DNA synthesis associated cell cycle protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:58,802,664...58,811,075
Ensembl chr 5:60,425,341...60,433,035 		JBrowse link
G TICRR TOPBP1 interacting checkpoint and replication regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:68,270,029...68,322,201
Ensembl chr15:87,476,738...87,528,870 		JBrowse link
G WRNIP1 WRN helicase interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:2,587,170...2,608,179
Ensembl chr 6:2,691,235...2,711,062 		JBrowse link
regulation of mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G METTL4 methyltransferase 4, N6-adenosine involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:11,711,502...11,745,222
Ensembl chr18:14,018,279...14,051,974 		JBrowse link
regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZMPSTE24 zinc metallopeptidase STE24 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3583382|PMID:15980864) MGI
Ensembl		 PMID:15980864 GO_REF:0000107 MGI:3583382 NCBI chr 1:39,545,264...39,589,721
Ensembl chr 1:40,869,076...40,912,747 		JBrowse link
regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:8,688,392...8,699,008
Ensembl chr12:8,904,273...8,913,917 		JBrowse link
G CDT1 chromatin licensing and DNA replication factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2159541|PMID:11850834) MGI
Ensembl		 PMID:11850834 GO_REF:0000107 MGI:2159541 NCBI chr16:69,516,728...69,522,419
Ensembl chr16:89,174,071...89,177,823 		JBrowse link
G DACH1 dachshund family transcription factor 1 involved_in ISO (MGI:5619482|PMID:16980615) CACAO PMID:16980615 MGI:5619482 NCBI chr13:52,666,569...53,098,257 JBrowse link
G ILKAP ILK associated serine/threonine phosphatase ISO RGD PMID:9857069 RGD:632254 NCBI chr2B:125,403,220...125,436,614
Ensembl chr2B:244,253,970...244,278,317 		JBrowse link
G NUGGC nuclear GTPase, germinal center associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:27,299,051...27,351,350
Ensembl chr 8:24,500,131...24,551,201 		JBrowse link
replication fork arrest term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLFN11 schlafen family member 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:21,412,361...21,436,650
Ensembl chr17:21,715,569...21,727,019 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15441
    metabolic process 10054
      regulation of metabolic process 6088
        regulation of macromolecule metabolic process 5349
          regulation of DNA metabolic process 472
            regulation of DNA replication 128
              regulation of DNA-templated DNA replication 44
                negative regulation of DNA-templated DNA replication + 6
                positive regulation of DNA-templated DNA replication + 13
                regulation of DNA endoreduplication + 4
                regulation of DNA replication termination + 0
                regulation of DNA-directed DNA polymerase activity + 14
                regulation of DNA-templated DNA replication initiation + 8
                regulation of mitochondrial DNA replication + 5
                regulation of nuclear cell cycle DNA replication + 12
                regulation of replication fork arrest at rDNA repeats 0
Path 2
Term Annotations click to browse term
  biological_process 15441
    metabolic process 10054
      organic substance metabolic process 9678
        organic cyclic compound metabolic process 2792
          nucleobase-containing compound metabolic process 2325
            nucleic acid metabolic process 1892
              DNA metabolic process 893
                regulation of DNA metabolic process 472
                  regulation of DNA replication 128
                    regulation of DNA-templated DNA replication 44
                      negative regulation of DNA-templated DNA replication + 6
                      positive regulation of DNA-templated DNA replication + 13
                      regulation of DNA endoreduplication + 4
                      regulation of DNA replication termination + 0
                      regulation of DNA-directed DNA polymerase activity + 14
                      regulation of DNA-templated DNA replication initiation + 8
                      regulation of mitochondrial DNA replication + 5
                      regulation of nuclear cell cycle DNA replication + 12
                      regulation of replication fork arrest at rDNA repeats 0
paths to the root