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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of protein deacetylation
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Accession:GO:0090311 term browser browse the term
Definition:Any process that modulates the rate, frequency, or extent of protein deacetylation, the removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid.
Synonyms:exact_synonym: regulation of protein amino acid deacetylation



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regulation of protein deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccar2 cell cycle and apoptosis regulator 2 involved_in ISO (PMID:21030595) RGD PMID:21030595 NCBI chr15:45,212,797...45,228,001
Ensembl chr15:45,212,803...45,227,636
JBrowse link
G Hdac2 histone deacetylase 2 acts_upstream_of_or_within ISO MGI:1916782 (MGI:4831050|PMID:20833366) RGD PMID:20833366 MGI:4831050 NCBI chr20:40,548,250...40,571,609
Ensembl chr20:40,548,250...40,571,609
JBrowse link
G Spred1 sprouty-related, EVH1 domain containing 1 involved_in IBA
ISO
PMID:21873635
(MGI:5318016|PMID:20736167)
RGD PMID:20736167 PMID:21873635 MGI:5318016, RGD:13792537 NCBI chr 3:103,983,120...104,050,321
Ensembl chr 3:103,983,072...104,049,718
JBrowse link
G Spred2 sprouty-related, EVH1 domain containing 2 involved_in IBA
ISO
PMID:21873635
(MGI:5318016|PMID:20736167)
RGD PMID:20736167 PMID:21873635 MGI:5318016, RGD:13792537 NCBI chr14:94,226,312...94,248,162
Ensembl chr14:94,148,837...94,249,162
JBrowse link
G Spred3 sprouty-related, EVH1 domain containing 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:84,458,779...84,470,425
Ensembl chr 1:84,459,314...84,470,249
JBrowse link
negative regulation of histone deacetylase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm5a lysine demethylase 5A involved_in ISO (MGI:5288521|PMID:21960634) RGD PMID:21960634 MGI:5288521 NCBI chr 4:153,565,909...153,643,912
Ensembl chr 4:153,565,846...153,642,422
JBrowse link
G Sphk2 sphingosine kinase 2 involved_in ISO (PMID:19729656) RGD PMID:19729656 NCBI chr 1:96,180,872...96,188,592
Ensembl chr 1:96,180,887...96,188,391
JBrowse link
negative regulation of histone deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 involved_in ISO UniProtKB:P56524 (PMID:19276356) RGD PMID:19276356 NCBI chr  X:14,908,494...14,924,994
Ensembl chr  X:14,908,494...14,923,838
JBrowse link
G LOC100910107 ubiquitin carboxyl-terminal hydrolase DUB-1-like involved_in ISO (PMID:21239494) RGD PMID:21239494 NCBI chr 1:159,151,417...159,155,192
Ensembl chr 1:159,151,432...159,155,192
JBrowse link
G Prmt6 protein arginine methyltransferase 6 involved_in ISO (PMID:30420520) RGD PMID:30420520 NCBI chr 2:197,927,750...197,932,980
Ensembl chr 2:197,927,220...197,933,648
JBrowse link
G Ski SKI proto-oncogene involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733
JBrowse link
G Sphk2 sphingosine kinase 2 involved_in ISO (PMID:19729656) RGD PMID:19729656 NCBI chr 1:96,180,872...96,188,592
Ensembl chr 1:96,180,887...96,188,391
JBrowse link
G Ucn urocortin involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:25,238,120...25,238,950
Ensembl chr 6:25,238,120...25,238,950
JBrowse link
negative regulation of tubulin deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bex4 brain expressed, X-linked 4 involved_in ISO
ISS
(PMID:27512957)
GO_REF:0000024
RGD
UniProt
PMID:27512957 GO_REF:0000024 NCBI chr  X:99,132,076...99,133,413
Ensembl chr  X:99,131,942...99,133,531
JBrowse link
G Dysf dysferlin acts_upstream_of_or_within ISO (MGI:5315068|PMID:22174839) RGD PMID:22174839 MGI:5315068 NCBI chr 4:116,490,877...116,690,709
Ensembl chr 4:116,490,616...116,690,709
JBrowse link
G Fry FRY microtubule binding protein involved_in ISO (MGI:5693359|PMID:23886946) RGD PMID:23886946 MGI:5693359 NCBI chr12:4,493,890...4,887,118
Ensembl chr12:4,493,891...4,799,116
JBrowse link
G Mapt microtubule-associated protein tau involved_in ISO
IEA
UniProtKB:Q9UBN7 (PMID:19457097)
UniProtKB:Q9Z2V5 (MGI:6119868|PMID:19457097)
GO_REF:0000107
RGD
Ensembl
PMID:19457097 GO_REF:0000107 MGI:6119868 NCBI chr10:89,138,644...89,236,137
Ensembl chr10:89,138,627...89,236,129
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISO UniProtKB:Q8BRK8 (MGI:6148443|PMID:27430620) RGD PMID:27430620 MGI:6148443 NCBI chr 2:54,240,298...54,275,978
Ensembl chr 2:54,240,137...54,275,978
JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:Q5EG47 (MGI:6148443|PMID:27430620)
Ensembl
RGD
PMID:27430620 GO_REF:0000107 MGI:6148443 NCBI chr 5:119,807,992...119,879,987
Ensembl chr 5:119,813,226...119,879,543
JBrowse link
G Tppp tubulin polymerization promoting protein involved_in ISO
ISS
(PMID:20308065), (PMID:23093407)
GO_REF:0000024
RGD
UniProt
PMID:20308065 PMID:23093407 GO_REF:0000024 NCBI chr 1:29,257,111...29,281,134
Ensembl chr 1:29,261,255...29,281,134
JBrowse link
positive regulation of histone deacetylase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine-rich repeat kinase 2 acts_upstream_of_or_within ISO (MGI:5902654|PMID:27798112) RGD PMID:27798112 MGI:5902654 NCBI chr 7:122,826,712...122,987,711
Ensembl chr 7:122,826,696...122,987,703
JBrowse link
G Pink1 PTEN induced kinase 1 acts_upstream_of_or_within ISO (MGI:5617128|PMID:25305081) RGD PMID:25305081 MGI:5617128 NCBI chr 5:150,530,523...150,542,635
Ensembl chr 5:150,530,523...150,542,635
JBrowse link
G Prkd1 protein kinase D1 involved_in ISO UniProtKB:Q9BZL6 (PMID:20497126) RGD PMID:20497126 NCBI chr 6:67,725,193...68,039,002
Ensembl chr 6:67,725,905...68,039,042
JBrowse link
G Prkd2 protein kinase D2 involved_in ISO UniProtKB:Q15139 (PMID:20497126) RGD PMID:20497126 NCBI chr 1:77,513,625...77,542,386
Ensembl chr 1:77,513,986...77,542,376
JBrowse link
G RGD735065 similar to GI:13385412-like protein splice form I involved_in ISO
IBA
ISS
(PMID:23460338)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:23460338 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr20:7,322,483...7,362,054
Ensembl chr20:7,322,442...7,357,612
JBrowse link
G Vegfa vascular endothelial growth factor A involved_in ISO (PMID:20497126) RGD PMID:20497126 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
positive regulation of histone deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8 A-kinase anchoring protein 8 involved_in ISO (PMID:16980585) RGD PMID:16980585 NCBI chr 7:11,316,224...11,332,523
Ensembl chr 7:11,316,228...11,332,399
JBrowse link
G Akap8l A-kinase anchoring protein 8 like involved_in ISO (PMID:16980585) RGD PMID:16980585 NCBI chr 7:11,332,671...11,362,287
Ensembl chr 7:11,332,672...11,362,275
JBrowse link
G Aplnr apelin receptor acts_upstream_of ISO (MGI:5584055|PMID:23603510) RGD PMID:23603510 MGI:5584055 NCBI chr 3:70,217,407...70,221,052
Ensembl chr 3:70,217,385...70,221,050
JBrowse link
G Bcl6 BCL6, transcription repressor acts_upstream_of_or_within ISO MGI:2135607 (MGI:5493185|PMID:23160044) RGD PMID:23160044 MGI:5493185 NCBI chr11:76,854,090...76,877,389
Ensembl chr11:76,854,090...76,877,389
JBrowse link
G Ctbp1 C-terminal binding protein 1 involved_in ISO
IEA
(PMID:21102443)
GO_REF:0000107
RGD
Ensembl
PMID:21102443 GO_REF:0000107 NCBI chr14:77,455,580...77,482,821
Ensembl chr14:77,455,696...77,482,821
JBrowse link
G Ing2 inhibitor of growth family, member 2 involved_in ISO (MGI:4867787|PMID:21124965) RGD PMID:21124965 MGI:4867787 NCBI chr16:44,573,592...44,584,180
Ensembl chr16:44,575,597...44,583,482
JBrowse link
G Jdp2 Jun dimerization protein 2 acts_upstream_of_or_within ISO MGI:1343091 (MGI:3807603|PMID:17464331) RGD PMID:17464331 MGI:3807603 NCBI chr 6:105,261,619...105,302,386
Ensembl chr 6:105,261,373...105,301,485
JBrowse link
G Lpin1 lipin 1 acts_upstream_of_or_within ISO (MGI:4819323|PMID:20385772) RGD PMID:20385772 MGI:4819323 NCBI chr 6:39,309,198...39,417,034
Ensembl chr 6:39,312,748...39,417,097
JBrowse link
G Ncor1 nuclear receptor co-repressor 1 acts_upstream_of_or_within ISO (MGI:3821398|PMID:19037247) RGD PMID:19037247 MGI:3821398 NCBI chr10:46,999,536...47,142,294
Ensembl chr10:46,999,536...47,141,032
JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in ISO (PMID:18854353) RGD PMID:18854353 NCBI chr 2:57,399,443...57,586,770
Ensembl chr 2:57,399,445...57,565,899
JBrowse link
G Pml PML nuclear body scaffold involved_in ISO (PMID:11259576) RGD PMID:11259576 NCBI chr 8:58,627,347...58,661,927
Ensembl chr 8:58,628,837...58,658,971
JBrowse link
G Sap30bp SAP30 binding protein involved_in ISO (PMID:21221920) RGD PMID:21221920 NCBI chr10:101,165,777...101,198,503
Ensembl chr10:101,165,856...101,198,502
JBrowse link
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 involved_in ISO (PMID:16691198) RGD PMID:16691198 NCBI chr 5:17,018,813...17,043,974
Ensembl chr 5:17,018,813...17,040,970
JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 acts_upstream_of_or_within ISO (MGI:3760208|PMID:17636037) RGD PMID:17636037 MGI:3760208 NCBI chr10:45,007,637...45,029,650
Ensembl chr10:45,007,637...45,029,650
JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO (MGI:3528807|PMID:15657445), (MGI:3584056|PMID:15990875) RGD PMID:15657445 PMID:15990875 MGI:3528807 MGI:3584056 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (MGI:3528807|PMID:15657445) RGD PMID:15657445 MGI:3528807 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B involved_in ISO (MGI:5446998|PMID:22730529) RGD PMID:22730529 MGI:5446998 NCBI chr 2:174,795,831...174,811,980
Ensembl chr 2:174,797,453...174,814,236
JBrowse link
positive regulation of protein deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brms1 BRMS1, transcriptional repressor and anoikis regulator involved_in ISO
ISS
(PMID:17000776)
GO_REF:0000024
RGD
UniProt
PMID:17000776 GO_REF:0000024 NCBI chr 1:202,345,766...202,355,028
Ensembl chr 1:202,345,704...202,355,028
JBrowse link
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A involved_in ISO (MGI:5318016|PMID:20736167) RGD PMID:20736167 MGI:5318016 NCBI chr11:33,890,706...34,009,420
Ensembl chr11:33,890,490...34,009,420
JBrowse link
G Ifng interferon gamma involved_in ISO (PMID:23629966)
(MGI:5490676|PMID:23629966)
RGD PMID:23629966 MGI:5490676 NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375
JBrowse link
G Ncor2 nuclear receptor co-repressor 2 acts_upstream_of_or_within ISO (MGI:3699018|PMID:17158926) RGD PMID:17158926 MGI:3699018 NCBI chr12:31,466,418...31,628,319
Ensembl chr12:31,466,412...31,628,319
JBrowse link
G Ndn necdin, MAGE family member acts_upstream_of_or_within ISO MGI:3586988 (MGI:5424047|PMID:22514318) RGD PMID:22514318 MGI:5424047 NCBI chr 1:115,849,168...115,850,767
Ensembl chr 1:115,849,105...115,850,767
JBrowse link
G Nnmt nicotinamide N-methyltransferase involved_in IEA
ISO
GO_REF:0000107
(MGI:5708799|PMID:26168293)
Ensembl
RGD
PMID:26168293 GO_REF:0000107 MGI:5708799 NCBI chr 8:48,928,663...48,947,734
Ensembl chr 8:48,933,598...48,946,655
JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 acts_upstream_of_or_within ISO MGI:1927664 (MGI:5471176|PMID:23201684) RGD PMID:23201684 MGI:5471176 NCBI chr15:29,283,153...29,292,107
Ensembl chr15:29,283,145...29,292,121
JBrowse link
G Sirt1 sirtuin 1 IMP RGD PMID:19470756 RGD:8553699 NCBI chr20:25,307,143...25,329,260
Ensembl chr20:25,306,917...25,329,260
JBrowse link
positive regulation of tubulin deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fnta farnesyltransferase, CAAX box, alpha involved_in ISO
IEA
(PMID:19228685)
GO_REF:0000107
RGD
Ensembl
PMID:19228685 GO_REF:0000107 NCBI chr16:66,065,131...66,083,460
Ensembl chr16:66,065,132...66,083,460
JBrowse link
G Hdac6 histone deacetylase 6 IMP RGD PMID:24464872 RGD:9681552 NCBI chr  X:14,550,645...14,572,445
Ensembl chr  X:14,551,044...14,572,441
JBrowse link
regulation of histone deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mapk8 mitogen-activated protein kinase 8 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:8,638,897...8,721,960
Ensembl chr16:8,638,924...8,721,981
JBrowse link
G Ncapg2 non-SMC condensin II complex, subunit G2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:137,342,449...137,418,083
Ensembl chr 6:137,342,943...137,415,159
JBrowse link
G Tada2a transcriptional adaptor 2A acts_upstream_of_or_within ISO MGI:1927664 (MGI:4462728|PMID:20562830) RGD PMID:20562830 MGI:4462728 NCBI chr10:68,966,502...69,014,149
Ensembl chr10:68,966,502...69,014,105
JBrowse link
G Tada3 transcriptional adaptor 3 acts_upstream_of_or_within ISO MGI:1927664 (MGI:4462728|PMID:20562830) RGD PMID:20562830 MGI:4462728 NCBI chr 4:146,510,213...146,521,975
Ensembl chr 4:146,510,246...146,521,590
JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 acts_upstream_of_or_within ISO (MGI:3851280|PMID:19501046) RGD PMID:19501046 MGI:3851280 NCBI chr12:19,686,606...19,692,880
Ensembl chr12:19,686,148...19,692,880
JBrowse link
regulation of tubulin deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ep300 E1A binding protein p300 involved_in ISO (PMID:18722353) RGD PMID:18722353 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
JBrowse link
G Nek3 NIMA-related kinase 3 involved_in ISO (MGI:4361101|PMID:19509051) RGD PMID:19509051 MGI:4361101 NCBI chr16:69,867,020...69,892,477
Ensembl chr16:69,867,047...69,892,508
JBrowse link
G Tada2a transcriptional adaptor 2A acts_upstream_of_or_within ISO MGI:1927664 (MGI:4462728|PMID:20562830) RGD PMID:20562830 MGI:4462728 NCBI chr10:68,966,502...69,014,149
Ensembl chr10:68,966,502...69,014,105
JBrowse link
G Tada3 transcriptional adaptor 3 acts_upstream_of_or_within ISO MGI:1927664 (MGI:4462728|PMID:20562830) RGD PMID:20562830 MGI:4462728 NCBI chr 4:146,510,213...146,521,975
Ensembl chr 4:146,510,246...146,521,590
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19390
    cellular process 18252
      regulation of cellular process 12196
        regulation of cellular metabolic process 5890
          regulation of cellular protein metabolic process 2468
            regulation of protein modification process 1588
              regulation of protein deacetylation 59
                positive regulation of protein deacetylation + 33
                regulation of histone deacetylation + 35
                regulation of tubulin deacetylation + 13
Path 2
Term Annotations click to browse term
  biological_process 19390
    metabolic process 11736
      organic substance metabolic process 11278
        organonitrogen compound metabolic process 6758
          protein metabolic process 5848
            cellular protein metabolic process 5188
              cellular protein modification process 3611
                protein deacylation 123
                  protein deacetylation 111
                    regulation of protein deacetylation 59
                      positive regulation of protein deacetylation + 33
                      regulation of histone deacetylation + 35
                      regulation of tubulin deacetylation + 13
paths to the root