Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of DNA methylation-dependent heterochromatin assembly
go back to main search page
Accession:GO:0090308 term browser browse the term
Definition:Any process that modulates the rate, frequency, or extent of the repression of transcription by methylation of DNA, leading to the formation of heterochromatin.
Synonyms:broad_synonym: regulation of methylation-dependent chromatin silencing



show annotations for term's descendants           Sort by:
 
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm1a lysine demethylase 1A involved_in ISO
IEA
(PMID:33980486)
GO_REF:0000107
RGD
Ensembl
PMID:33980486 GO_REF:0000107 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319
JBrowse link
G L3mbtl3 L3MBTL histone methyl-lysine binding protein 3 involved_in ISO (PMID:33980486) RGD PMID:33980486 NCBI chr 1:18,988,763...19,089,247
Ensembl chr 1:18,990,618...19,089,263
JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) RGD PMID:19736317 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
JBrowse link
G Samd1 sterile alpha motif domain containing 1 involved_in ISO (PMID:33980486) RGD PMID:33980486 NCBI chr19:24,151,136...24,154,475
Ensembl chr19:24,151,128...24,154,488
JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in ISO (PMID:21496894) RGD PMID:21496894 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5285126|PMID:21496894)
UniProt
RGD
PMID:21496894 GO_REF:0000024 MGI:5285126 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 involved_in ISO (PMID:21496894) RGD PMID:21496894 NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein involved_in ISO
IBA
(PMID:27732843)
PMID:21873635
RGD PMID:27732843 PMID:21873635 RGD:13792537 NCBI chr 4:169,385,872...169,471,652
Ensembl chr 4:169,385,872...169,471,650
JBrowse link
G Atf7ip2 activating transcription factor 7 interacting protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:5,403,099...5,445,989
Ensembl chr10:5,403,105...5,446,142
JBrowse link
G Dnmt1 DNA methyltransferase 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:24623306)
UniProt
Ensembl
RGD
PMID:24623306 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659
JBrowse link
G LOC120093070 PHD finger protein 11-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:33,526,380...33,549,382
Ensembl chr15:33,453,952...33,606,470
JBrowse link
G LOC120093163 PHD finger protein 11-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:33,453,948...33,475,669
Ensembl chr15:33,453,952...33,606,470
JBrowse link
G Morc2 MORC family CW-type zinc finger 2 involved_in ISO (PMID:28581500), (PMID:29211708)
(MGI:6271895|PMID:29728365)
RGD PMID:28581500 PMID:29211708 PMID:29728365 MGI:6271895 NCBI chr14:78,529,603...78,571,375
Ensembl chr14:78,527,009...78,571,343
JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in ISS
ISO
GO_REF:0000024
(PMID:28581500), (PMID:29211708)
UniProt
RGD
PMID:28581500 PMID:29211708 GO_REF:0000024 NCBI chr15:30,800,546...30,828,415
Ensembl chr15:30,686,613...30,828,810
JBrowse link
G Pphln1 periphilin 1 involved_in ISO (PMID:28581500) RGD PMID:28581500 NCBI chr 7:124,538,594...124,629,985
Ensembl chr 7:124,538,627...124,629,985
JBrowse link
G Resf1 retroelement silencing factor 1 involved_in ISO
IBA
(MGI:6271895|PMID:29728365)
PMID:21873635
RGD PMID:29728365 PMID:21873635 MGI:6271895, RGD:13792537 NCBI chr 4:182,325,913...182,362,054
Ensembl chr 4:182,335,454...182,362,054
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 involved_in IBA
ISO
PMID:21873635
(MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365)
(PMID:24623306), (PMID:27732843)
RGD PMID:20164836 PMID:24623306 PMID:27732843 PMID:29728365 PMID:21873635 MGI:5440670 MGI:6271895, RGD:13792537 NCBI chr 2:182,898,738...182,930,283
Ensembl chr 2:182,898,738...182,930,506
JBrowse link
G Setdb2 SET domain bifurcated histone lysine methyltransferase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:33,553,657...33,606,586
Ensembl chr15:33,453,952...33,606,470
JBrowse link
G Tasor transcription activation suppressor involved_in ISO
IBA
(PMID:28581500), (PMID:29211708)
PMID:21873635
RGD PMID:28581500 PMID:29211708 PMID:21873635 RGD:13792537 NCBI chr16:2,606,807...2,669,902
Ensembl chr16:2,603,936...2,667,292
JBrowse link
G Trim28 tripartite motif-containing 28 involved_in ISS
ISO
GO_REF:0000024
(MGI:5440670|PMID:20164836)
(PMID:24623306)
UniProt
RGD
PMID:20164836 PMID:24623306 GO_REF:0000024 MGI:5440670 NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19512
    metabolic process 11791
      regulation of metabolic process 6831
        regulation of macromolecule metabolic process 6326
          regulation of gene expression 4883
            regulation of heterochromatin assembly 38
              regulation of DNA methylation-dependent heterochromatin assembly 20
                negative regulation of DNA methylation-dependent heterochromatin assembly 3
                positive regulation of DNA methylation-dependent heterochromatin assembly 13
Path 2
Term Annotations click to browse term
  biological_process 19512
    cellular process 18319
      cellular component organization or biogenesis 6656
        cellular component organization 6418
          organelle organization 3941
            chromosome organization 1023
              DNA conformation change 389
                DNA packaging 293
                  chromatin assembly 250
                    heterochromatin assembly 136
                      facultative heterochromatin assembly 38
                        DNA methylation-dependent heterochromatin assembly 28
                          regulation of DNA methylation-dependent heterochromatin assembly 20
                            negative regulation of DNA methylation-dependent heterochromatin assembly 3
                            positive regulation of DNA methylation-dependent heterochromatin assembly 13
paths to the root