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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleic acid phosphodiester bond hydrolysis
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Accession:GO:0090305 term browser browse the term
Definition:The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
Synonyms:exact_synonym: nucleic acid cleavage


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nucleic acid phosphodiester bond hydrolysis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ANKLE1 ankyrin repeat and LEM domain containing 1 JBrowse link 19 17,744,570 17,750,070 RGD:9068941
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 JBrowse link 14 19,381,911 19,384,542 RGD:9068941
G APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 JBrowse link X 55,442,599 55,450,402 RGD:9068941
G APLF aprataxin and PNKP like factor JBrowse link 2A 69,632,459 69,744,611 RGD:9068941
G APTX aprataxin JBrowse link 9 33,556,419 33,608,416 RGD:9068941
G ASTE1 asteroid homolog 1 JBrowse link 3 135,420,860 135,433,827 RGD:9068941
G ATAD5 ATPase family AAA domain containing 5 JBrowse link 17 25,435,787 25,496,752 RGD:9068941
G ATRIP ATR interacting protein JBrowse link 3 49,450,861 49,469,351 RGD:9068941
G DCLRE1A DNA cross-link repair 1A JBrowse link 10 113,866,759 113,886,279 RGD:9068941
G DCLRE1B DNA cross-link repair 1B JBrowse link 1 123,692,921 123,701,403 RGD:9068941
G DCLRE1C DNA cross-link repair 1C JBrowse link 10 15,229,515 15,625,331 RGD:9068941
G DDX1 DEAD-box helicase 1 JBrowse link 2A 15,716,044 15,753,482 RGD:9068941
G DNA2 DNA replication helicase/nuclease 2 JBrowse link 10 67,207,261 67,264,257 RGD:9068941
G DNASE1L3 deoxyribonuclease 1 like 3 JBrowse link 3 59,542,243 59,560,363 RGD:9068941
G DXO decapping exoribonuclease JBrowse link 6 32,517,086 32,519,566 RGD:9068941
G EME1 essential meiotic structure-specific endonuclease 1 JBrowse link 17 49,341,791 49,349,959 RGD:9068941
G EME2 essential meiotic structure-specific endonuclease subunit 2 JBrowse link 16 1,825,548 1,831,870 RGD:9068941
G ENDOD1 endonuclease domain containing 1 JBrowse link 11 93,626,201 93,669,386 RGD:9068941
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 JBrowse link 6 133,698,904 133,783,644 RGD:9068941
G ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 JBrowse link 8 118,998,530 119,114,271 RGD:9068941
G ENPP3 ectonucleotide pyrophosphatase/phosphodiesterase 3 JBrowse link 6 133,544,650 133,638,009 RGD:9068941
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit JBrowse link 19 50,951,674 50,994,600 RGD:9068941
G ERCC5 ERCC excision repair 5, endonuclease JBrowse link 13 103,142,508 103,173,022 RGD:9068941
G EXD1 exonuclease 3'-5' domain containing 1 JBrowse link 15 38,372,281 38,418,429 RGD:9068941
G EXD2 exonuclease 3'-5' domain containing 2 JBrowse link 14 68,656,455 68,708,773 RGD:9068941
G EXD3 exonuclease 3'-5' domain containing 3 JBrowse link 9 137,336,229 137,427,312 RGD:9068941
G EXO1 exonuclease 1 JBrowse link 1 222,389,684 222,431,556 RGD:9068941
G EXO5 exonuclease 5 JBrowse link 1 41,121,293 41,128,526 RGD:9068941
G FAN1 FANCD2 and FANCI associated nuclease 1 JBrowse link 15 28,355,689 28,472,109 RGD:9068941
G FANCM FA complementation group M JBrowse link 14 44,080,146 44,143,958 RGD:9068941
G FEN1 flap structure-specific endonuclease 1 JBrowse link 11 60,452,750 60,457,354 RGD:9068941
G G3BP1 G3BP stress granule assembly factor 1 JBrowse link 5 153,197,988 153,237,329 RGD:9068941
G GEN1 GEN1 Holliday junction 5' flap endonuclease JBrowse link 2A 17,861,948 17,892,048 RGD:9068941
G HARBI1 harbinger transposase derived 1 JBrowse link 11 47,112,973 47,126,380 RGD:9068941
G LAS1L LAS1 like ribosome biogenesis factor JBrowse link X 64,703,731 64,726,304 RGD:9068941
G LOC100978673 endonuclease V JBrowse link 17 80,576,451 80,591,856 RGD:9068941
G LOC100986203 histone-lysine N-methyltransferase SETMAR JBrowse link 3 4,357,779 4,371,810 RGD:9068941
G MEIOB meiosis specific with OB-fold JBrowse link 16 1,927,145 1,956,522 RGD:9068941
G MGME1 mitochondrial genome maintenance exonuclease 1 JBrowse link 20 17,906,984 17,929,214 RGD:9068941
G MRE11 MRE11 homolog, double strand break repair nuclease JBrowse link 11 92,908,403 92,985,966 RGD:9068941
G MUS81 MUS81 structure-specific endonuclease subunit JBrowse link 11 64,549,683 64,555,875 RGD:9068941
G N4BP2 NEDD4 binding protein 2 JBrowse link 4 40,253,199 40,336,040 RGD:9068941
G PDE12 phosphodiesterase 12 JBrowse link 3 58,695,951 58,703,257 RGD:9068941
G PELO pelota mRNA surveillance and ribosome rescue factor JBrowse link 5 62,851,499 62,865,786 RGD:9068941
G PGAP1 post-GPI attachment to proteins inositol deacylase 1 JBrowse link 2B 201,975,318 202,063,853 RGD:9068941
G PGBD5 piggyBac transposable element derived 5 JBrowse link 1 210,897,173 211,000,549 RGD:9068941
G PLD3 phospholipase D family member 3 JBrowse link 19 45,910,035 45,939,343 RGD:9068941
G PLD4 phospholipase D family member 4 JBrowse link 14 105,360,584 105,368,931 RGD:9068941
G PLD6 phospholipase D family member 6 JBrowse link 17 39,016,859 39,023,398 RGD:9068941
G PMS2 PMS1 homolog 2, mismatch repair system component JBrowse link 7 6,175,913 6,203,094 RGD:9068941
G PNKP polynucleotide kinase 3'-phosphatase JBrowse link 19 55,790,048 55,796,762 RGD:9068941
G POLD1 DNA polymerase delta 1, catalytic subunit JBrowse link 19 56,251,356 56,284,263 RGD:9068941
G POLE DNA polymerase epsilon, catalytic subunit JBrowse link 12 134,695,976 134,758,650 RGD:9068941
G POLG DNA polymerase gamma, catalytic subunit JBrowse link 15 87,214,451 87,234,739 RGD:9068941
G PXDNL peroxidasin like JBrowse link 8 45,132,928 45,366,150 RGD:9068941
G RAD1 RAD1 checkpoint DNA exonuclease JBrowse link 5 80,732,954 80,744,448 RGD:9068941
G RAD50 RAD50 double strand break repair protein JBrowse link 5 134,134,506 134,222,261 RGD:9068941
G RAD9A RAD9 checkpoint clamp component A JBrowse link 11 65,989,692 66,068,220 RGD:9068941
G RAD9B RAD9 checkpoint clamp component B JBrowse link 12 111,467,881 111,497,803 RGD:9068941
G RAG1 recombination activating 1 JBrowse link 11 36,356,483 36,418,891 RGD:9068941
G RBBP8 RB binding protein 8, endonuclease JBrowse link 18 19,811,478 19,903,522 RGD:9068941
G REV3L REV3 like, DNA directed polymerase zeta catalytic subunit JBrowse link 6 113,181,753 113,367,822 RGD:9068941
G REXO1 RNA exonuclease 1 homolog JBrowse link 19 1,795,604 1,809,438 RGD:9068941
G REXO5 RNA exonuclease 5 JBrowse link 16 20,838,590 20,881,413 RGD:9068941
G RNASE1 ribonuclease A family member 1, pancreatic JBrowse link 14 19,719,885 19,746,621 RGD:9068941
G SLX1A SLX1 homolog A, structure-specific endonuclease subunit JBrowse link 16 30,561,503 30,565,244 RGD:9068941
G STK31 serine/threonine kinase 31 JBrowse link 7 23,992,150 24,120,248 RGD:9068941
G TATDN1 TatD DNase domain containing 1 JBrowse link 8 123,925,580 123,975,908 RGD:9068941
G TATDN2 TatD DNase domain containing 2 JBrowse link 3 10,536,852 10,568,824 RGD:9068941
G TATDN3 TatD DNase domain containing 3 JBrowse link 1 193,218,908 193,244,612 RGD:9068941
G TDP1 tyrosyl-DNA phosphodiesterase 1 JBrowse link 14 89,926,462 90,014,802 RGD:9068941
G TDP2 tyrosyl-DNA phosphodiesterase 2 JBrowse link 6 24,819,494 24,837,189 RGD:9068941
G TREX1 three prime repair exonuclease 1 JBrowse link 3 49,469,406 49,471,371 RGD:9068941
G TREX2 three prime repair exonuclease 2 JBrowse link X 152,881,479 152,884,584 RGD:9068941
G TSEN15 tRNA splicing endonuclease subunit 15 JBrowse link 1 163,736,803 163,759,337 RGD:9068941
G USB1 U6 snRNA biogenesis phosphodiesterase 1 JBrowse link 16 57,408,841 57,430,665 RGD:9068941
G WRN WRN RecQ like helicase JBrowse link 8 27,541,145 27,679,855 RGD:9068941
G XRN1 5'-3' exoribonuclease 1 JBrowse link 3 146,930,988 147,073,827 RGD:9068941
G ZC3H12B zinc finger CCCH-type containing 12B JBrowse link X 64,680,085 64,699,055 RGD:9068941
G ZC3H12C zinc finger CCCH-type containing 12C JBrowse link 11 108,859,581 108,900,311 RGD:9068941
G ZC3H12D zinc finger CCCH-type containing 12D JBrowse link 6 151,973,996 152,010,309 RGD:9068941
G ZRANB3 zinc finger RANBP2-type containing 3 JBrowse link 2B 139,271,306 139,603,946 RGD:9068941
apoptotic DNA fragmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CASP3 caspase 3 JBrowse link 4 189,018,422 189,040,217 RGD:9068941
G DFFA DNA fragmentation factor subunit alpha JBrowse link 1 10,445,553 10,457,547 RGD:9068941
G DFFB DNA fragmentation factor subunit beta JBrowse link 1 3,649,723 3,676,896 RGD:9068941
G DICER1 dicer 1, ribonuclease III JBrowse link 14 95,036,385 95,107,940 RGD:9068941
G DNASE1L3 deoxyribonuclease 1 like 3 JBrowse link 3 59,542,243 59,560,363 RGD:9068941
G DNASE2 deoxyribonuclease 2, lysosomal JBrowse link 19 13,180,073 13,185,650 RGD:9068941
G DNASE2B deoxyribonuclease 2 beta JBrowse link 1 85,807,300 85,824,257 RGD:9068941
G ENDOG endonuclease G JBrowse link 9 128,609,839 128,613,353 RGD:9068941
G EXOG exo/endonuclease G JBrowse link 3 38,674,970 38,703,750 RGD:9068941
G FOXL2 forkhead box L2 JBrowse link 3 143,578,194 143,580,291 RGD:9068941
G HMGB1 high mobility group box 1 JBrowse link 13 30,173,875 30,179,527 RGD:9068941
G HMGB2 high mobility group box 2 JBrowse link 4 177,797,457 177,800,952 RGD:9068941
G KPNA1 karyopherin subunit alpha 1 JBrowse link 3 126,418,157 126,510,325 RGD:9068941
G KPNB1 karyopherin subunit beta 1 JBrowse link 17 10,035,738 10,068,401 RGD:9068941
G LOC100970460 histone H1.0 JBrowse link 22 36,551,246 36,553,595 RGD:9068941
G LOC100991444 cat eye syndrome critical region protein 2 JBrowse link 22 16,229,348 16,417,958 RGD:9068941
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BOP1 BOP1 ribosomal biogenesis factor JBrowse link 8 144,015,518 144,043,278 RGD:9068941
G NOL9 nucleolar protein 9 JBrowse link 1 6,541,712 6,571,463 RGD:9068941
cleavage involved in rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NHP2 NHP2 ribonucleoprotein JBrowse link 5 180,566,008 180,570,502 RGD:9068941
G NOB1 NIN1 (RPN12) binding protein 1 homolog JBrowse link 16 69,506,425 69,517,932 RGD:9068941
G RRP36 ribosomal RNA processing 36 JBrowse link 6 43,908,750 43,916,314 RGD:9068941
deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DCP1A decapping mRNA 1A JBrowse link 3 54,449,980 54,514,267 RGD:9068941
G DCP1B decapping mRNA 1B JBrowse link 12 2,007,406 2,065,139 RGD:9068941
G EDC3 enhancer of mRNA decapping 3 JBrowse link 15 73,196,823 73,262,222 RGD:9068941
G EDC4 enhancer of mRNA decapping 4 JBrowse link 16 67,601,515 67,613,012 RGD:9068941
G PNRC2 proline rich nuclear receptor coactivator 2 JBrowse link 1 24,135,973 24,148,082 RGD:9068941
DNA catabolic process, endonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DNASE1 deoxyribonuclease 1 JBrowse link 16 3,708,189 3,758,615 RGD:9068941
G DNASE1L1 deoxyribonuclease 1 like 1 JBrowse link X 153,712,050 153,725,868 RGD:9068941
G DNASE1L2 deoxyribonuclease 1 like 2 JBrowse link 16 2,336,203 2,338,684 RGD:9068941
G DNASE1L3 deoxyribonuclease 1 like 3 JBrowse link 3 59,542,243 59,560,363 RGD:9068941
G ENDOG endonuclease G JBrowse link 9 128,609,839 128,613,353 RGD:9068941
G EXOG exo/endonuclease G JBrowse link 3 38,674,970 38,703,750 RGD:9068941
G FBH1 F-box DNA helicase 1 JBrowse link 10 5,915,696 5,962,778 RGD:9068941
G LOC100986203 histone-lysine N-methyltransferase SETMAR JBrowse link 3 4,357,779 4,371,810 RGD:9068941
G MUS81 MUS81 structure-specific endonuclease subunit JBrowse link 11 64,549,683 64,555,875 RGD:9068941
G REXO4 REX4 homolog, 3'-5' exonuclease JBrowse link 9 133,140,392 133,152,413 RGD:9068941
G SPO11 SPO11 initiator of meiotic double stranded breaks JBrowse link 20 54,948,664 54,962,908 RGD:9068941
DNA catabolic process, exonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AEN apoptosis enhancing nuclease JBrowse link 15 86,502,347 86,529,579 RGD:9068941
G ERI1 exoribonuclease 1 RGD:9068941
G ERI3 ERI1 exoribonuclease family member 3 JBrowse link 1 44,894,011 45,027,265 RGD:9068941
G ISG20 interferon stimulated exonuclease gene 20 JBrowse link 15 86,533,468 86,553,868 RGD:9068941
G REXO4 REX4 homolog, 3'-5' exonuclease JBrowse link 9 133,140,392 133,152,413 RGD:9068941
G XRN2 5'-3' exoribonuclease 2 JBrowse link 20 21,222,138 21,308,561 RGD:9068941
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABT1 activator of basal transcription 1 JBrowse link 6 27,086,465 27,088,668 RGD:9068941
G FCF1 FCF1 rRNA-processing protein JBrowse link 14 74,112,199 74,134,008 RGD:9068941
G NOP14 NOP14 nucleolar protein JBrowse link 4 2,982,906 3,007,548 RGD:9068941
G RCL1 RNA terminal phosphate cyclase like 1 JBrowse link 9 4,813,750 4,881,423 RGD:9068941
G TBL3 transducin beta like 3 JBrowse link 16 2,061,074 2,067,974 RGD:9068941
G UTP20 UTP20 small subunit processome component JBrowse link 12 102,265,283 102,372,830 RGD:9068941
G UTP23 UTP23 small subunit processome component JBrowse link 8 115,984,355 115,990,708 RGD:9068941
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABT1 activator of basal transcription 1 JBrowse link 6 27,086,465 27,088,668 RGD:9068941
G FCF1 FCF1 rRNA-processing protein JBrowse link 14 74,112,199 74,134,008 RGD:9068941
G KRI1 KRI1 homolog JBrowse link 19 10,767,384 10,780,254 RGD:9068941
G NOP14 NOP14 nucleolar protein JBrowse link 4 2,982,906 3,007,548 RGD:9068941
G RCL1 RNA terminal phosphate cyclase like 1 JBrowse link 9 4,813,750 4,881,423 RGD:9068941
G RPP40 ribonuclease P/MRP subunit p40 JBrowse link 6 5,015,953 5,024,540 RGD:9068941
G RPS21 ribosomal protein S21 JBrowse link 20 60,072,484 60,073,962 RGD:9068941
G RRS1 ribosome biogenesis regulator 1 homolog JBrowse link 8 64,638,584 64,640,311 RGD:9068941
G UTP20 UTP20 small subunit processome component JBrowse link 12 102,265,283 102,372,830 RGD:9068941
endonucleolytic cleavage involved in tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RPP40 ribonuclease P/MRP subunit p40 JBrowse link 6 5,015,953 5,024,540 RGD:9068941
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMS1 BMS1 ribosome biogenesis factor JBrowse link 10 42,942,439 42,983,304 RGD:9068941
G RCL1 RNA terminal phosphate cyclase like 1 JBrowse link 9 4,813,750 4,881,423 RGD:9068941
G TSR1 TSR1 ribosome maturation factor JBrowse link 17 2,198,132 2,213,193 RGD:9068941
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RPS21 ribosomal protein S21 JBrowse link 20 60,072,484 60,073,962 RGD:9068941
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABT1 activator of basal transcription 1 JBrowse link 6 27,086,465 27,088,668 RGD:9068941
G NOP14 NOP14 nucleolar protein JBrowse link 4 2,982,906 3,007,548 RGD:9068941
G TBL3 transducin beta like 3 JBrowse link 16 2,061,074 2,067,974 RGD:9068941
G UTP20 UTP20 small subunit processome component JBrowse link 12 102,265,283 102,372,830 RGD:9068941
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ERI1 exoribonuclease 1 RGD:9068941
G ERI3 ERI1 exoribonuclease family member 3 JBrowse link 1 44,894,011 45,027,265 RGD:9068941
G EXOSC10 exosome component 10 JBrowse link 1 11,050,727 11,087,241 RGD:9068941
G EXOSC2 exosome component 2 JBrowse link 9 130,464,487 130,475,719 RGD:9068941
G EXOSC3 exosome component 3 JBrowse link 9 38,552,659 38,558,075 RGD:9068941
G EXOSC7 exosome component 7 JBrowse link 3 45,932,301 46,024,604 RGD:9068941
G EXOSC8 exosome component 8 JBrowse link 13 36,638,238 36,647,273 RGD:9068941
G EXOSC9 exosome component 9 JBrowse link 4 125,138,668 125,154,288 RGD:9068941
meiotic DNA double-strand break formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C11H11orf80 chromosome 11 C11orf80 homolog JBrowse link 11 65,427,881 65,522,087 RGD:9068941
G HORMAD1 HORMA domain containing 1 JBrowse link 1 129,704,287 129,726,691 RGD:9068941
G IHO1 interactor of HORMAD1 1 JBrowse link 3 50,217,333 50,260,487 RGD:9068941
G MEI4 meiotic double-stranded break formation protein 4 JBrowse link 6 78,782,019 79,049,409 RGD:9068941
G MRE11 MRE11 homolog, double strand break repair nuclease JBrowse link 11 92,908,403 92,985,966 RGD:9068941
G SPO11 SPO11 initiator of meiotic double stranded breaks JBrowse link 20 54,948,664 54,962,908 RGD:9068941
meiotic DNA double-strand break formation involved in reciprocal meiotic recombination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ANKRD31 ankyrin repeat domain 31 JBrowse link 5 40,673,567 40,849,519 RGD:9068941
mitochondrial tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ELAC2 elaC ribonuclease Z 2 JBrowse link 17 43,331,453 43,357,469 RGD:9068941
mRNA cleavage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPSF2 cleavage and polyadenylation specific factor 2 JBrowse link 14 92,099,278 92,139,902 RGD:9068941
G CPSF3 cleavage and polyadenylation specific factor 3 JBrowse link 2A 9,576,871 9,626,202 RGD:9068941
G CSTF3 cleavage stimulation factor subunit 3 JBrowse link 11 32,945,428 33,022,079 RGD:9068941
G ERN1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 17 63,226,949 63,317,825 RGD:9068941
G PCF11 PCF11 cleavage and polyadenylation factor subunit JBrowse link 11 81,832,382 81,860,964 RGD:9068941
G POLR1H RNA polymerase I subunit H JBrowse link 6 30,509,326 30,512,956 RGD:9068941
G POLR2I RNA polymerase II subunit I JBrowse link 19 41,780,125 41,781,764 RGD:9068941
G RNASE4 ribonuclease A family member 4 JBrowse link 14 19,605,890 19,621,987 RGD:9068941
mRNA cleavage involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AGO1 argonaute RISC component 1 JBrowse link 1 36,324,733 36,370,798 RGD:9068941
G AGO2 argonaute RISC catalytic component 2 JBrowse link 8 140,278,610 140,361,124 RGD:9068941
G AGO3 argonaute RISC catalytic component 3 JBrowse link 1 36,371,926 36,497,190 RGD:9068941
G AGO4 argonaute RISC component 4 JBrowse link 1 36,249,040 36,299,259 RGD:9068941
G MOV10 Mov10 RISC complex RNA helicase JBrowse link 1 124,999,353 125,025,820 RGD:9068941
mRNA cleavage involved in gene silencing by siRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AGO1 argonaute RISC component 1 JBrowse link 1 36,324,733 36,370,798 RGD:9068941
G AGO2 argonaute RISC catalytic component 2 JBrowse link 8 140,278,610 140,361,124 RGD:9068941
G AGO3 argonaute RISC catalytic component 3 JBrowse link 1 36,371,926 36,497,190 RGD:9068941
G AGO4 argonaute RISC component 4 JBrowse link 1 36,249,040 36,299,259 RGD:9068941
mRNA cleavage involved in mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ERN1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 17 63,226,949 63,317,825 RGD:9068941
negative regulation of apoptotic DNA fragmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DFFA DNA fragmentation factor subunit alpha JBrowse link 1 10,445,553 10,457,547 RGD:9068941
G NMNAT1 nicotinamide nucleotide adenylyltransferase 1 JBrowse link 1 9,942,491 9,982,369 RGD:9068941
G PAM16 presequence translocase associated motor 16 JBrowse link 16 4,421,899 4,445,761 RGD:9068941
nucleotide-excision repair, DNA incision term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CHD1L chromodomain helicase DNA binding protein 1 like JBrowse link 1 112,809,272 112,862,234 RGD:9068941
G CUL4A cullin 4A JBrowse link 13 113,428,215 113,474,194 RGD:9068941
G CUL4B cullin 4B JBrowse link X 119,985,109 120,034,715 RGD:9068941
G DDB1 damage specific DNA binding protein 1 JBrowse link 11 59,964,235 59,997,805 RGD:9068941
G DDB2 damage specific DNA binding protein 2 JBrowse link 11 47,714,723 47,738,761 RGD:9068941
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit JBrowse link 19 50,951,674 50,994,600 RGD:9068941
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link 19 50,897,004 50,915,849 RGD:9068941
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit JBrowse link 2B 127,922,483 127,959,372 RGD:9068941
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit JBrowse link 16 14,272,417 14,304,496 RGD:9068941
G ERCC5 ERCC excision repair 5, endonuclease JBrowse link 13 103,142,508 103,173,022 RGD:9068941
G FAN1 FANCD2 and FANCI associated nuclease 1 JBrowse link 15 28,355,689 28,472,109 RGD:9068941
G GTF2H1 general transcription factor IIH subunit 1 JBrowse link 11 18,042,822 18,086,898 RGD:9068941
G GTF2H2 general transcription factor IIH subunit 2 JBrowse link 5 45,985,077 46,028,618 RGD:9068941
G GTF2H3 general transcription factor IIH subunit 3 JBrowse link 12 125,445,381 125,473,763 RGD:9068941
G GTF2H4 general transcription factor IIH subunit 4 JBrowse link 6 31,521,501 31,527,456 RGD:9068941
G GTF2H5 general transcription factor IIH subunit 5 JBrowse link 6 158,126,665 158,160,838 RGD:9068941
G OGG1 8-oxoguanine DNA glycosylase JBrowse link 3 9,940,955 9,972,658 RGD:9068941
G PARP1 poly(ADP-ribose) polymerase 1 JBrowse link 1 206,812,981 206,860,356 RGD:9068941
G PCNA proliferating cell nuclear antigen JBrowse link 20 4,927,731 4,939,440 RGD:9068941
G POLD1 DNA polymerase delta 1, catalytic subunit JBrowse link 19 56,251,356 56,284,263 RGD:9068941
G POLD2 DNA polymerase delta 2, accessory subunit JBrowse link 7 44,896,320 44,906,084 RGD:9068941
G POLD3 DNA polymerase delta 3, accessory subunit JBrowse link 11 72,969,721 73,020,585 RGD:9068941
G POLD4 DNA polymerase delta 4, accessory subunit JBrowse link 11 66,022,395 66,024,442 RGD:9068941
G POLK DNA polymerase kappa JBrowse link 5 40,313,114 40,365,841 RGD:9068941
G RBX1 ring-box 1 JBrowse link 22 39,941,405 39,962,175 RGD:9068941
G RFC1 replication factor C subunit 1 JBrowse link 4 39,471,719 39,548,548 RGD:9068941
G RFC2 replication factor C subunit 2 JBrowse link 7 81,378,937 81,401,937 RGD:9068941
G RFC3 replication factor C subunit 3 JBrowse link 13 33,503,992 33,650,610 RGD:9068941
G RFC4 replication factor C subunit 4 JBrowse link 3 192,290,639 192,307,478 RGD:9068941
G RFC5 replication factor C subunit 5 JBrowse link 12 118,973,645 118,990,308 RGD:9068941
G RPA1 replication protein A1 JBrowse link 17 1,705,373 1,775,596 RGD:9068941
G RPA2 replication protein A2 JBrowse link 1 28,191,726 28,214,665 RGD:9068941
G RPA3 replication protein A3 JBrowse link 7 7,713,632 7,794,199 RGD:9068941
G RPS27A ribosomal protein S27a JBrowse link 2A 56,529,856 56,533,527 RGD:9068941
G UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1 JBrowse link 19 19,018,821 19,022,263 RGD:9068941
G UBC ubiquitin C JBrowse link 12 126,789,228 126,793,343 RGD:9068941
G XPA XPA, DNA damage recognition and repair factor JBrowse link 9 96,866,303 96,909,260 RGD:9068941
nucleotide-excision repair, DNA incision, 3'-to lesion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BIVM basic, immunoglobulin-like variable motif containing JBrowse link 13 103,096,344 103,138,551 RGD:9068941
G CHD1L chromodomain helicase DNA binding protein 1 like JBrowse link 1 112,809,272 112,862,234 RGD:9068941
G CUL4A cullin 4A JBrowse link 13 113,428,215 113,474,194 RGD:9068941
G CUL4B cullin 4B JBrowse link X 119,985,109 120,034,715 RGD:9068941
G DDB1 damage specific DNA binding protein 1 JBrowse link 11 59,964,235 59,997,805 RGD:9068941
G DDB2 damage specific DNA binding protein 2 JBrowse link 11 47,714,723 47,738,761 RGD:9068941
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit JBrowse link 19 50,951,674 50,994,600 RGD:9068941
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link 19 50,897,004 50,915,849 RGD:9068941
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit JBrowse link 2B 127,922,483 127,959,372 RGD:9068941
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit JBrowse link 16 14,272,417 14,304,496 RGD:9068941
G ERCC5 ERCC excision repair 5, endonuclease JBrowse link 13 103,142,508 103,173,022 RGD:9068941
G GTF2H1 general transcription factor IIH subunit 1 JBrowse link 11 18,042,822 18,086,898 RGD:9068941
G GTF2H2 general transcription factor IIH subunit 2 JBrowse link 5 45,985,077 46,028,618 RGD:9068941
G GTF2H3 general transcription factor IIH subunit 3 JBrowse link 12 125,445,381 125,473,763 RGD:9068941
G GTF2H4 general transcription factor IIH subunit 4 JBrowse link 6 31,521,501 31,527,456 RGD:9068941
G GTF2H5 general transcription factor IIH subunit 5 JBrowse link 6 158,126,665 158,160,838 RGD:9068941
G PARP1 poly(ADP-ribose) polymerase 1 JBrowse link 1 206,812,981 206,860,356 RGD:9068941
G RBX1 ring-box 1 JBrowse link 22 39,941,405 39,962,175 RGD:9068941
G RPA1 replication protein A1 JBrowse link 17 1,705,373 1,775,596 RGD:9068941
G RPA2 replication protein A2 JBrowse link 1 28,191,726 28,214,665 RGD:9068941
G RPA3 replication protein A3 JBrowse link 7 7,713,632 7,794,199 RGD:9068941
G XPA XPA, DNA damage recognition and repair factor JBrowse link 9 96,866,303 96,909,260 RGD:9068941
nucleotide-excision repair, DNA incision, 5'-to lesion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CHD1L chromodomain helicase DNA binding protein 1 like JBrowse link 1 112,809,272 112,862,234 RGD:9068941
G CUL4A cullin 4A JBrowse link 13 113,428,215 113,474,194 RGD:9068941
G CUL4B cullin 4B JBrowse link X 119,985,109 120,034,715 RGD:9068941
G DDB1 damage specific DNA binding protein 1 JBrowse link 11 59,964,235 59,997,805 RGD:9068941
G DDB2 damage specific DNA binding protein 2 JBrowse link 11 47,714,723 47,738,761 RGD:9068941
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit JBrowse link 19 50,951,674 50,994,600 RGD:9068941
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link 19 50,897,004 50,915,849 RGD:9068941
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit JBrowse link 2B 127,922,483 127,959,372 RGD:9068941
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit JBrowse link 16 14,272,417 14,304,496 RGD:9068941
G ERCC5 ERCC excision repair 5, endonuclease JBrowse link 13 103,142,508 103,173,022 RGD:9068941
G GTF2H1 general transcription factor IIH subunit 1 JBrowse link 11 18,042,822 18,086,898 RGD:9068941
G GTF2H2 general transcription factor IIH subunit 2 JBrowse link 5 45,985,077 46,028,618 RGD:9068941
G GTF2H3 general transcription factor IIH subunit 3 JBrowse link 12 125,445,381 125,473,763 RGD:9068941
G GTF2H4 general transcription factor IIH subunit 4 JBrowse link 6 31,521,501 31,527,456 RGD:9068941
G GTF2H5 general transcription factor IIH subunit 5 JBrowse link 6 158,126,665 158,160,838 RGD:9068941
G NTHL1 nth like DNA glycosylase 1 JBrowse link 16 2,127,858 2,135,656 RGD:9068941
G PARP1 poly(ADP-ribose) polymerase 1 JBrowse link 1 206,812,981 206,860,356 RGD:9068941
G PCNA proliferating cell nuclear antigen JBrowse link 20 4,927,731 4,939,440 RGD:9068941
G POLD1 DNA polymerase delta 1, catalytic subunit JBrowse link 19 56,251,356 56,284,263 RGD:9068941
G POLD2 DNA polymerase delta 2, accessory subunit JBrowse link 7 44,896,320 44,906,084 RGD:9068941
G POLD3 DNA polymerase delta 3, accessory subunit JBrowse link 11 72,969,721 73,020,585 RGD:9068941
G POLD4 DNA polymerase delta 4, accessory subunit JBrowse link 11 66,022,395 66,024,442 RGD:9068941
G POLK DNA polymerase kappa JBrowse link 5 40,313,114 40,365,841 RGD:9068941
G RBX1 ring-box 1 JBrowse link 22 39,941,405 39,962,175 RGD:9068941
G RFC1 replication factor C subunit 1 JBrowse link 4 39,471,719 39,548,548 RGD:9068941
G RFC2 replication factor C subunit 2 JBrowse link 7 81,378,937 81,401,937 RGD:9068941
G RFC3 replication factor C subunit 3 JBrowse link 13 33,503,992 33,650,610 RGD:9068941
G RFC4 replication factor C subunit 4 JBrowse link 3 192,290,639 192,307,478 RGD:9068941
G RFC5 replication factor C subunit 5 JBrowse link 12 118,973,645 118,990,308 RGD:9068941
G RPA1 replication protein A1 JBrowse link 17 1,705,373 1,775,596 RGD:9068941
G RPA2 replication protein A2 JBrowse link 1 28,191,726 28,214,665 RGD:9068941
G RPA3 replication protein A3 JBrowse link 7 7,713,632 7,794,199 RGD:9068941
G RPS27A ribosomal protein S27a JBrowse link 2A 56,529,856 56,533,527 RGD:9068941
G UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1 JBrowse link 19 19,018,821 19,022,263 RGD:9068941
G UBC ubiquitin C JBrowse link 12 126,789,228 126,793,343 RGD:9068941
G XPA XPA, DNA damage recognition and repair factor JBrowse link 9 96,866,303 96,909,260 RGD:9068941
positive regulation of apoptotic DNA fragmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BAX BCL2 associated X, apoptosis regulator JBrowse link 19 54,793,594 54,800,466 RGD:9068941
G ENDOG endonuclease G JBrowse link 9 128,609,839 128,613,353 RGD:9068941
G HSF1 heat shock transcription factor 1 JBrowse link 8 144,062,137 144,067,725 RGD:9068941
G IL6 interleukin 6 JBrowse link 7 23,027,560 23,032,419 RGD:9068941
G ST20 suppressor of tumorigenicity 20 JBrowse link 15 77,823,681 77,848,092 RGD:9068941
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ZFP36 ZFP36 ring finger protein JBrowse link 19 45,052,797 45,055,390 RGD:9068941
positive regulation of meiotic DNA double-strand break formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ANKRD31 ankyrin repeat domain 31 JBrowse link 5 40,673,567 40,849,519 RGD:9068941
positive regulation of mRNA cleavage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NUDT21 nudix hydrolase 21 JBrowse link 16 55,847,736 55,870,008 RGD:9068941
pre-mRNA cleavage required for polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPSF1 cleavage and polyadenylation specific factor 1 JBrowse link 8 144,149,253 144,166,183 RGD:9068941
G CPSF2 cleavage and polyadenylation specific factor 2 JBrowse link 14 92,099,278 92,139,902 RGD:9068941
G CPSF4 cleavage and polyadenylation specific factor 4 JBrowse link 7 104,914,077 104,932,769 RGD:9068941
G CPSF4L cleavage and polyadenylation specific factor 4 like JBrowse link 17 72,632,536 72,645,845 RGD:9068941
G CPSF6 cleavage and polyadenylation specific factor 6 JBrowse link 12 69,537,904 69,562,570 RGD:9068941
G CPSF7 cleavage and polyadenylation specific factor 7 JBrowse link 11 60,065,832 60,092,720 RGD:9068941
G CSTF2 cleavage stimulation factor subunit 2 JBrowse link X 100,161,749 100,182,304 RGD:9068941
G CSTF2T cleavage stimulation factor subunit 2 tau variant JBrowse link 10 50,477,193 50,481,591 RGD:9068941
G FIP1L1 factor interacting with PAPOLA and CPSF1 JBrowse link 4 77,050,856 77,132,995 RGD:9068941
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 96,845,422 96,885,624 RGD:9068941
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 3 204,214,282 204,221,446 RGD:9068941
G NUDT21 nudix hydrolase 21 JBrowse link 16 55,847,736 55,870,008 RGD:9068941
G TUT1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 11 61,287,375 61,303,784 RGD:9068941
regulation of apoptotic DNA fragmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AIFM1 apoptosis inducing factor mitochondria associated 1 JBrowse link X 129,550,287 129,586,271 RGD:9068941
G APAF1 apoptotic peptidase activating factor 1 JBrowse link 12 99,637,622 99,726,946 RGD:9068941
G CDKN2A cyclin dependent kinase inhibitor 2A JBrowse link 9 22,420,748 22,447,243 RGD:9068941
G CIDEA cell death inducing DFFA like effector a JBrowse link 18 17,162,126 17,185,450 RGD:9068941
RNA phosphodiester bond hydrolysis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ANG angiogenin JBrowse link 14 19,605,854 19,615,571 RGD:9068941
G DICER1 dicer 1, ribonuclease III JBrowse link 14 95,036,385 95,107,940 RGD:9068941
G DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease JBrowse link 13 72,760,610 72,787,325 RGD:9068941
G DIS3L2 DIS3 like 3'-5' exoribonuclease 2 JBrowse link 2B 237,976,038 238,346,098 RGD:9068941
G ERN2 endoplasmic reticulum to nucleus signaling 2 JBrowse link 16 23,940,716 23,963,894 RGD:9068941
G HELZ2 helicase with zinc finger 2 JBrowse link 20 61,483,623 61,498,995 RGD:9068941
G LOC100980965 zinc-alpha-2-glycoprotein JBrowse link 7 105,432,782 105,442,219 RGD:9068941
G POP4 POP4 homolog, ribonuclease P/MRP subunit JBrowse link 19 35,296,084 35,307,008 RGD:9068941
G PPP1R8 protein phosphatase 1 regulatory subunit 8 JBrowse link 1 28,133,265 28,153,678 RGD:9068941
G RNASE1 ribonuclease A family member 1, pancreatic JBrowse link 14 19,719,885 19,746,621 RGD:9068941
G RNASE10 ribonuclease A family member 10 (inactive) JBrowse link 14 19,430,824 19,434,448 RGD:9068941
G RNASE11 ribonuclease A family member 11 (inactive) JBrowse link 14 19,505,838 19,512,691 RGD:9068941
G RNASE12 ribonuclease A family member 12 (inactive) JBrowse link 14 19,512,240 19,512,971 RGD:9068941
G RNASE13 ribonuclease A family member 13 (inactive) JBrowse link 14 19,929,716 19,931,681 RGD:9068941
G RNASE2 ribonuclease A family member 2 JBrowse link 14 19,841,044 19,842,028 RGD:9068941
G RNASE4 ribonuclease A family member 4 JBrowse link 14 19,605,890 19,621,987 RGD:9068941
G RNASE6 ribonuclease A family member k6 JBrowse link 14 19,699,881 19,701,303 RGD:9068941
G RNASE7 ribonuclease A family member 7 JBrowse link 14 19,939,117 19,941,124 RGD:9068941
G RNASE9 ribonuclease A family member 9 (inactive) JBrowse link 14 19,478,278 19,483,105 RGD:9068941
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 JBrowse link 20 34,341,367 34,398,514 RGD:9068941
G ZC3H12A zinc finger CCCH-type containing 12A JBrowse link 1 38,093,036 38,103,556 RGD:9068941
RNA phosphodiester bond hydrolysis, endonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AGO1 argonaute RISC component 1 JBrowse link 1 36,324,733 36,370,798 RGD:9068941
G AGO2 argonaute RISC catalytic component 2 JBrowse link 8 140,278,610 140,361,124 RGD:9068941
G AGO3 argonaute RISC catalytic component 3 JBrowse link 1 36,371,926 36,497,190 RGD:9068941
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 JBrowse link 14 19,381,911 19,384,542 RGD:9068941
G CPSF3 cleavage and polyadenylation specific factor 3 JBrowse link 2A 9,576,871 9,626,202 RGD:9068941
G DBR1 debranching RNA lariats 1 JBrowse link 3 142,639,712 142,653,016 RGD:9068941
G DGCR8 DGCR8 microprocessor complex subunit JBrowse link 22 18,518,789 18,544,740 RGD:9068941
G DICER1 dicer 1, ribonuclease III JBrowse link 14 95,036,385 95,107,940 RGD:9068941
G DROSHA drosha ribonuclease III JBrowse link 5 84,191,596 84,322,590 RGD:9068941
G EDC3 enhancer of mRNA decapping 3 JBrowse link 15 73,196,823 73,262,222 RGD:9068941
G ELAC1 elaC ribonuclease Z 1 JBrowse link 18 47,692,305 47,706,019 RGD:9068941
G ENDOG endonuclease G JBrowse link 9 128,609,839 128,613,353 RGD:9068941
G ENDOU endonuclease, poly(U) specific JBrowse link 12 41,882,397 41,898,189 RGD:9068941
G ERN1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 17 63,226,949 63,317,825 RGD:9068941
G ERN2 endoplasmic reticulum to nucleus signaling 2 JBrowse link 16 23,940,716 23,963,894 RGD:9068941
G EXO1 exonuclease 1 JBrowse link 1 222,389,684 222,431,556 RGD:9068941
G EXOG exo/endonuclease G JBrowse link 3 38,674,970 38,703,750 RGD:9068941
G FEN1 flap structure-specific endonuclease 1 JBrowse link 11 60,452,750 60,457,354 RGD:9068941
G LACTB2 lactamase beta 2 JBrowse link 8 68,823,061 68,854,992 RGD:9068941
G LOC100978673 endonuclease V JBrowse link 17 80,576,451 80,591,856 RGD:9068941
G MRPL44 mitochondrial ribosomal protein L44 JBrowse link 2B 229,779,983 229,790,240 RGD:9068941
G NOB1 NIN1 (RPN12) binding protein 1 homolog JBrowse link 16 69,506,425 69,517,932 RGD:9068941
G NUDT16 nudix hydrolase 16 JBrowse link 3 135,788,354 135,795,417 RGD:9068941
G NUDT16L1 nudix hydrolase 16 like 1 JBrowse link 16 4,785,313 4,787,445 RGD:9068941
G PIWIL1 piwi like RNA-mediated gene silencing 1 JBrowse link 12 132,169,820 132,199,374 RGD:9068941
G PIWIL2 piwi like RNA-mediated gene silencing 2 JBrowse link 8 18,459,052 18,546,688 RGD:9068941
G PIWIL4 piwi like RNA-mediated gene silencing 4 JBrowse link 11 93,098,926 93,151,404 RGD:9068941
G POP1 POP1 homolog, ribonuclease P/MRP subunit JBrowse link 8 96,938,574 96,980,896 RGD:9068941
G POP4 POP4 homolog, ribonuclease P/MRP subunit JBrowse link 19 35,296,084 35,307,008 RGD:9068941
G POP5 POP5 homolog, ribonuclease P/MRP subunit JBrowse link 12 121,535,005 121,537,350 RGD:9068941
G POP7 POP7 homolog, ribonuclease P/MRP subunit JBrowse link 7 106,124,018 106,135,430 RGD:9068941
G PRORP protein only RNase P catalytic subunit JBrowse link 14 34,056,234 34,209,657 RGD:9068941
G RIDA reactive intermediate imine deaminase A homolog JBrowse link 8 96,923,776 96,938,512 RGD:9068941
G RNASE1 ribonuclease A family member 1, pancreatic JBrowse link 14 19,719,885 19,746,621 RGD:9068941
G RNASE2 ribonuclease A family member 2 JBrowse link 14 19,841,044 19,842,028 RGD:9068941
G RNASE4 ribonuclease A family member 4 JBrowse link 14 19,605,890 19,621,987 RGD:9068941
G RNASEH1 ribonuclease H1 JBrowse link 2A 3,482,772 3,496,978 RGD:9068941
G RNASEH2A ribonuclease H2 subunit A JBrowse link 19 13,112,242 13,119,514 RGD:9068941
G RNASEH2B ribonuclease H2 subunit B JBrowse link 13 50,804,013 50,839,440 RGD:9068941
G RNASEK ribonuclease K JBrowse link 17 7,031,283 7,033,393 RGD:9068941
G RNASEL ribonuclease L JBrowse link 1 161,744,169 161,759,741 RGD:9068941
G RNASET2 ribonuclease T2 JBrowse link 6 169,872,780 169,899,599 RGD:9068941
G RPP14 ribonuclease P/MRP subunit p14 JBrowse link 3 59,653,220 59,666,302 RGD:9068941
G RPP21 ribonuclease P/MRP subunit p21 JBrowse link 6 30,994,039 30,995,764 RGD:9068941
G RPP30 ribonuclease P/MRP subunit p30 JBrowse link 10 91,138,993 91,171,848 RGD:9068941
G RPP38 ribonuclease P/MRP subunit p38 JBrowse link 10 15,694,410 15,701,569 RGD:9068941
G SLFN11 schlafen family member 11 JBrowse link 17 21,705,803 21,728,810 RGD:9068941
G SLFN13 schlafen family member 13 JBrowse link 17 21,638,342 21,647,766 RGD:9068941
G SLFN14 schlafen family member 14 JBrowse link 17 21,530,009 21,539,589 RGD:9068941
G SMG6 SMG6 nonsense mediated mRNA decay factor JBrowse link 17 1,937,630 2,179,535 RGD:9068941
G SND1 staphylococcal nuclease and tudor domain containing 1 JBrowse link 7 132,302,137 132,738,223 RGD:9068941
G TSEN2 tRNA splicing endonuclease subunit 2 JBrowse link 3 12,754,106 12,800,801 RGD:9068941
G TSEN34 tRNA splicing endonuclease subunit 34 JBrowse link 19 59,963,844 59,968,453 RGD:9068941
G TSN translin JBrowse link 2B 122,440,668 122,453,519 RGD:9068941
G TSNAX translin associated factor X JBrowse link 1 212,104,927 212,142,691 RGD:9068941
G UBXN8 UBX domain protein 8 JBrowse link 8 27,247,044 27,269,348 RGD:9068941
G YBEY ybeY metalloendoribonuclease JBrowse link 21 45,879,517 45,888,717 RGD:9068941
G ZC3H12A zinc finger CCCH-type containing 12A JBrowse link 1 38,093,036 38,103,556 RGD:9068941
RNA phosphodiester bond hydrolysis, exonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ANGEL1 angel homolog 1 JBrowse link 14 76,548,480 76,597,123 RGD:9068941
G ANGEL2 angel homolog 2 JBrowse link 1 193,412,133 193,435,331 RGD:9068941
G CNOT1 CCR4-NOT transcription complex subunit 1 JBrowse link 16 57,919,276 58,027,472 RGD:9068941
G CNOT2 CCR4-NOT transcription complex subunit 2 JBrowse link 12 70,520,722 70,633,149 RGD:9068941
G CNOT6 CCR4-NOT transcription complex subunit 6 JBrowse link 5 183,007,081 183,089,997 RGD:9068941
G CNOT6L CCR4-NOT transcription complex subunit 6 like JBrowse link 4 52,220,159 52,327,311 RGD:9068941
G CNOT7 CCR4-NOT transcription complex subunit 7 JBrowse link 8 13,383,044 13,404,896 RGD:9068941
G CNOT8 CCR4-NOT transcription complex subunit 8 JBrowse link 5 156,256,448 156,274,293 RGD:9068941
G DCP2 decapping mRNA 2 JBrowse link 5 114,135,923 114,179,963 RGD:9068941
G DCPS decapping enzyme, scavenger JBrowse link 11 125,028,350 125,073,044 RGD:9068941
G DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease JBrowse link 13 72,760,610 72,787,325 RGD:9068941
G DIS3L DIS3 like exosome 3'-5' exoribonuclease JBrowse link 15 63,523,512 63,563,813 RGD:9068941
G DIS3L2 DIS3 like 3'-5' exoribonuclease 2 JBrowse link 2B 237,976,038 238,346,098 RGD:9068941
G ERI2 ERI1 exoribonuclease family member 2 JBrowse link 16 20,828,498 20,838,615 RGD:9068941
G EXD2 exonuclease 3'-5' domain containing 2 JBrowse link 14 68,656,455 68,708,773 RGD:9068941
G EXOSC1 exosome component 1 JBrowse link 10 97,552,667 97,562,253 RGD:9068941
G EXOSC4 exosome component 4 JBrowse link 8 143,837,255 143,839,292 RGD:9068941
G EXOSC5 exosome component 5 JBrowse link 19 46,886,320 46,897,703 RGD:9068941
G EXOSC6 exosome component 6 JBrowse link 7 152,645,545 152,657,307 RGD:9068941
G ISG20 interferon stimulated exonuclease gene 20 JBrowse link 15 86,533,468 86,553,868 RGD:9068941
G ISG20L2 interferon stimulated exonuclease gene 20 like 2 JBrowse link 1 135,887,702 135,893,021 RGD:9068941
G NOCT nocturnin JBrowse link 4 142,691,322 142,719,533 RGD:9068941
G PAN2 poly(A) specific ribonuclease subunit PAN2 JBrowse link 12 32,835,235 32,853,645 RGD:9068941
G PAN3 poly(A) specific ribonuclease subunit PAN3 JBrowse link 13 27,797,325 27,921,266 RGD:9068941
G PARN poly(A)-specific ribonuclease JBrowse link 16 14,787,881 14,977,786 RGD:9068941
G PDE12 phosphodiesterase 12 JBrowse link 3 58,695,951 58,703,257 RGD:9068941
G PNLDC1 PARN like, ribonuclease domain containing 1 JBrowse link 6 162,694,132 162,715,220 RGD:9068941
G PNPT1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 2A 56,931,110 56,986,408 RGD:9068941
G REXO2 RNA exonuclease 2 JBrowse link 11 113,156,189 113,166,767 RGD:9068941
G TOE1 target of EGR1, exonuclease JBrowse link 1 46,000,974 46,005,279 RGD:9068941
G TRIR telomerase RNA component interacting RNase JBrowse link 19 13,038,516 13,045,720 RGD:9068941
G USB1 U6 snRNA biogenesis phosphodiesterase 1 JBrowse link 16 57,408,841 57,430,665 RGD:9068941
G XRN1 5'-3' exoribonuclease 1 JBrowse link 3 146,930,988 147,073,827 RGD:9068941
G XRN2 5'-3' exoribonuclease 2 JBrowse link 20 21,222,138 21,308,561 RGD:9068941
G ZC3H12A zinc finger CCCH-type containing 12A JBrowse link 1 38,093,036 38,103,556 RGD:9068941
tRNA 3'-trailer cleavage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ELAC1 elaC ribonuclease Z 1 JBrowse link 18 47,692,305 47,706,019 RGD:9068941
G POLR3K RNA polymerase III subunit K JBrowse link 16 37,772 44,598 RGD:9068941
tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ELAC1 elaC ribonuclease Z 1 JBrowse link 18 47,692,305 47,706,019 RGD:9068941
UV-damage excision repair, DNA incision term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G XPC XPC complex subunit, DNA damage recognition and repair factor JBrowse link 3 14,403,958 14,437,373 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15758
    metabolic process 10722
      organic substance metabolic process 10201
        macromolecule metabolic process 8835
          nucleic acid metabolic process 4710
            nucleic acid phosphodiester bond hydrolysis 298
              DNA catabolic process, endonucleolytic + 34
              DNA catabolic process, exonucleolytic 6
              RNA phosphodiester bond hydrolysis + 150
              UV-damage excision repair, DNA incision 1
              deadenylation-independent decapping of nuclear-transcribed mRNA + 6
              gene conversion at mating-type locus, DNA double-strand break formation 0
              meiotic DNA double-strand break formation + 7
              nucleotide-excision repair, DNA incision + 39
              viral DNA cleavage involved in viral genome maturation 0
Path 2
Term Annotations click to browse term
  biological_process 15758
    metabolic process 10722
      cellular metabolic process 9943
        cellular aromatic compound metabolic process 5409
          nucleobase-containing compound metabolic process 5212
            nucleic acid metabolic process 4710
              nucleic acid phosphodiester bond hydrolysis 298
                DNA catabolic process, endonucleolytic + 34
                DNA catabolic process, exonucleolytic 6
                RNA phosphodiester bond hydrolysis + 150
                UV-damage excision repair, DNA incision 1
                deadenylation-independent decapping of nuclear-transcribed mRNA + 6
                gene conversion at mating-type locus, DNA double-strand break formation 0
                meiotic DNA double-strand break formation + 7
                nucleotide-excision repair, DNA incision + 39
                viral DNA cleavage involved in viral genome maturation 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.