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ONTOLOGY REPORT - ANNOTATIONS


Term:establishment of planar polarity involved in neural tube closure
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Accession:GO:0090177 term browser browse the term
Definition:Coordinated organization of groups of cells in the plane of an epithelium that contributes to the closure of the neural tube.


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establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within ISO MGI:1915838 (MGI:3814781|PMID:18606138) RGD PMID:18606138 MGI:3814781 NCBI chr 7:70,122,474...70,132,756
Ensembl chr 7:70,122,474...70,132,756
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO MGI:1857642 (MGI:3814781|PMID:18606138) RGD PMID:18606138 MGI:3814781 NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378
JBrowse link
negative regulation of planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98958 (MGI:4830282|PMID:19056682) RGD PMID:19056682 MGI:4830282 NCBI chr 4:167,266,581...167,400,155
Ensembl chr 4:167,270,353...167,400,497
JBrowse link
planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO MGI:1918711|MGI:2135272 (MGI:4830023|PMID:20704721) RGD PMID:20704721 MGI:4830023 NCBI chr 7:116,987,616...117,125,035
Ensembl chr 7:116,987,605...117,125,164
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:106613 (MGI:3624185|PMID:16571627)
RGD PMID:16571627 PMID:21873635 MGI:3624185, RGD:13792537 NCBI chr 5:166,456,989...166,468,733
Ensembl chr 5:166,456,686...166,468,664
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2135272|MGI:2429760|MGI:94941 (MGI:3624185|PMID:16571627)
RGD PMID:16571627 PMID:21873635 MGI:3624185, RGD:13792537 NCBI chr10:54,723,356...54,732,823
Ensembl chr10:54,723,411...54,732,820
JBrowse link
G Dvl3 dishevelled segment polarity protein 3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2135272 (MGI:3821448|PMID:19008950)
RGD PMID:19008950 PMID:21873635 MGI:3821448, RGD:13792537 NCBI chr11:80,365,446...80,382,641
Ensembl chr11:80,366,117...80,382,462
JBrowse link
G Fzd1 frizzled class receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1888513|MGI:2135272 (MGI:4837757|PMID:20940229)
Ensembl
RGD
PMID:20940229 GO_REF:0000107 MGI:4837757 NCBI chr 4:29,310,303...29,314,701 JBrowse link
G Fzd2 frizzled class receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1196625|MGI:2135272 (MGI:4837757|PMID:20940229)
Ensembl
RGD
PMID:20940229 GO_REF:0000107 MGI:4837757 NCBI chr10:87,561,866...87,563,776
Ensembl chr10:87,561,326...87,565,334
JBrowse link
G Grhl3 grainyhead-like transcription factor 3 acts_upstream_of_or_within ISO MGI:2135272 (MGI:4819429|PMID:20643356) RGD PMID:20643356 MGI:4819429 NCBI chr 5:147,774,160...147,806,338
Ensembl chr 5:147,774,160...147,806,160
JBrowse link
G Ptk7 protein tyrosine kinase 7 acts_upstream_of_or_within ISO MGI:1100883|MGI:2135272 (MGI:4830023|PMID:20704721) RGD PMID:20704721 MGI:4830023 NCBI chr 9:14,352,155...14,418,494
Ensembl chr 9:14,351,202...14,418,494
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:108078|MGI:1860298|MGI:2135272 (MGI:3793375|PMID:18257070)
Ensembl
RGD
PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr16:68,575,763...68,613,905
Ensembl chr16:68,575,763...68,614,286
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:1860298|MGI:2135272|MGI:892014 (MGI:3793375|PMID:18257070) RGD PMID:18257070 MGI:3793375 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063
JBrowse link
G Sfrp5 secreted frizzled-related protein 5 acts_upstream_of_or_within ISO MGI:108078|MGI:2135272|MGI:892014 (MGI:3793375|PMID:18257070) RGD PMID:18257070 MGI:3793375 NCBI chr 1:241,006,762...241,011,224
Ensembl chr 1:241,006,762...241,011,224
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO MGI:106613|MGI:108078|MGI:108100|MGI:1100883|MGI:1196625|MGI:1857642|MGI:1860298|MGI:1888513|MGI:1918711|MGI:2655333|MGI:892014 (MGI:3624185|PMID:16571627), (MGI:3793375|PMID:18257070), (MGI:3821448|PMID:19008950), (MGI:4819429|PMID:20643356), (MGI:4830023|PMID:20704721), (MGI:4837757|PMID:20940229) RGD PMID:16571627 PMID:18257070 PMID:19008950 PMID:20643356 PMID:20704721 More... MGI:3624185 MGI:3793375 MGI:3821448 MGI:4819429 MGI:4830023 MGI:4837757 NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378
JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857617 (MGI:4830282|PMID:19056682)
Ensembl
RGD
PMID:19056682 GO_REF:0000107 MGI:4830282 NCBI chr16:3,695,667...3,718,234
Ensembl chr16:3,697,032...3,718,234
JBrowse link
regulation of establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:4440619|MGI:4440621 (MGI:4438817|PMID:19966784) RGD PMID:19966784 MGI:4438817 NCBI chr 2:218,562,670...218,632,753
Ensembl chr 2:218,562,676...218,632,699
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19492
    developmental process 6770
      anatomical structure morphogenesis 2888
        embryonic morphogenesis 689
          establishment of planar polarity involved in neural tube closure 16
            regulation of establishment of planar polarity involved in neural tube closure + 15
Path 2
Term Annotations click to browse term
  biological_process 19492
    developmental process 6770
      anatomical structure development 6196
        tissue development 2077
          epithelium development 1279
            morphogenesis of an epithelium 592
              epithelial tube morphogenesis 405
                epithelial tube formation 168
                  embryonic epithelial tube formation 157
                    neural tube formation 135
                      primary neural tube formation 120
                        neural tube closure 113
                          establishment of planar polarity involved in neural tube closure 16
                            regulation of establishment of planar polarity involved in neural tube closure + 15
paths to the root