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ONTOLOGY REPORT - ANNOTATIONS

Term:COPII-coated vesicle budding
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Accession:GO:0090114 term browser browse the term
Definition:The evagination of an endoplasmic reticulum membrane, resulting in formation of a COPII-coated vesicle.
Synonyms:narrow_synonym: ER exit
 broad_synonym: ER vesicle budding
 related_synonym: COPII vesicle budding


show annotations for term's descendants           Sort by:
 
COPII-coated vesicle budding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:146,877,739...146,891,130
Ensembl chr 4:146,875,524...146,891,173 		JBrowse link
G Vapa VAMP associated protein A involved_in ISO (PMID:18713837) RGD PMID:18713837 NCBI chr 9:105,177,904...105,208,400
Ensembl chr 9:105,177,907...105,207,847 		JBrowse link
G Vapb VAMP associated protein B and C involved_in ISO (PMID:18713837) RGD PMID:18713837 NCBI chr 3:162,536,090...162,578,738
Ensembl chr 3:162,535,905...162,573,763 		JBrowse link
COPII vesicle coating term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul3 cullin 3 involved_in ISO
ISS		 (PMID:22358839)
GO_REF:0000024		 RGD
UniProt		 PMID:22358839 GO_REF:0000024 NCBI chr 9:81,592,641...81,670,428
Ensembl chr 9:81,592,641...81,670,462 		JBrowse link
G Klhl12 kelch-like family member 12 involved_in IEA
ISS
ISO
IBA		 GO_REF:0000107
GO_REF:0000024
(PMID:22358839), (PMID:27716508)
PMID:21873635		 Ensembl
UniProt
RGD		 PMID:22358839 PMID:27716508 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr13:45,899,913...45,933,648
Ensembl chr13:45,899,928...45,933,643 		JBrowse link
G Pdcd6 programmed cell death 6 involved_in ISO
ISS		 (PMID:27716508)
GO_REF:0000024		 RGD
UniProt		 PMID:27716508 GO_REF:0000024 NCBI chr 1:28,966,518...28,982,188
Ensembl chr 1:28,966,518...28,982,189 		JBrowse link
G Pef1 penta-EF hand domain containing 1 involved_in IBA
ISS
ISO		 PMID:21873635
GO_REF:0000024
(PMID:27716508)		 UniProt
RGD		 PMID:27716508 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:142,451,791...142,475,061
Ensembl chr 5:142,451,778...142,475,067 		JBrowse link
G Preb prolactin regulatory element binding involved_in IDA PMID:11422940 UniProt PMID:11422940 RGD:11344947 NCBI chr 6:25,418,805...25,422,594
Ensembl chr 6:25,418,776...25,422,590 		JBrowse link
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:9,229,687...9,264,837
Ensembl chr 3:9,229,687...9,264,273 		JBrowse link
G Sec16b SEC16 homolog B, endoplasmic reticulum export factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:69,665,757...69,727,199
Ensembl chr13:69,684,291...69,727,196 		JBrowse link
G Tfg trafficking from ER to golgi regulator involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:43,885,542...43,911,976
Ensembl chr11:43,885,661...43,911,976 		JBrowse link
COPII-coated vesicle cargo loading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mia3 MIA SH3 domain ER export factor 3 involved_in ISO (PMID:27138255) RGD PMID:27138255 NCBI chr13:94,970,421...95,012,071
Ensembl chr13:94,970,424...95,011,972 		JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO (PMID:17684057) RGD PMID:17684057 NCBI chr14:94,422,219...94,448,799
Ensembl chr14:94,415,275...94,448,248 		JBrowse link
G Sar1a secretion associated, Ras related GTPase 1A involved_in ISO (PMID:17499046), (PMID:18843296) RGD PMID:17499046 PMID:18843296 NCBI chr20:29,623,529...29,635,935
Ensembl chr20:29,623,553...29,635,935 		JBrowse link
G Scap SREBF chaperone involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 8:110,306,031...110,360,677
Ensembl chr 8:110,306,031...110,360,666 		JBrowse link
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component involved_in ISO (PMID:17499046), (PMID:18843296) RGD PMID:17499046 PMID:18843296 NCBI chr 4:146,877,739...146,891,130
Ensembl chr 4:146,875,524...146,891,173 		JBrowse link
G Sec23a Sec23 homolog A, COPII coat complex component involved_in IBA
ISO		 PMID:21873635
UniProtKB:P15303 (PMID:17499046), (PMID:18843296), (PMID:8898360)		 RGD PMID:8898360 PMID:17499046 PMID:18843296 PMID:21873635 RGD:13792537 NCBI chr 6:76,658,793...76,706,125
Ensembl chr 6:76,658,427...76,706,035 		JBrowse link
G Sec23b Sec23 homolog B, COPII coat complex component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:131,939,011...131,981,489
Ensembl chr 3:131,939,337...131,981,489 		JBrowse link
G Sec24a SEC24 homolog A, COPII coat complex component involved_in IBA
ISO		 PMID:21873635
(PMID:17499046), (PMID:18843296)		 RGD PMID:17499046 PMID:18843296 PMID:21873635 RGD:13792537 NCBI chr10:35,946,901...36,024,353
Ensembl chr10:35,947,031...36,024,353 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component involved_in ISO
IBA		 (PMID:17499046), (PMID:18843296)
PMID:21873635		 RGD PMID:17499046 PMID:18843296 PMID:21873635 RGD:13792537 NCBI chr 2:218,562,670...218,632,753
Ensembl chr 2:218,562,676...218,632,699 		JBrowse link
G Sec24c SEC24 homolog C, COPII coat complex component involved_in IBA
ISO		 PMID:21873635
(PMID:17499046), (PMID:18843296)		 RGD PMID:17499046 PMID:18843296 PMID:21873635 RGD:13792537 NCBI chr15:3,602,460...3,624,524
Ensembl chr15:3,602,460...3,624,422 		JBrowse link
G Sec24d SEC24 homolog D, COPII coat complex component involved_in ISO
IBA		 (PMID:17499046), (PMID:18843296)
PMID:21873635		 RGD PMID:17499046 PMID:18843296 PMID:21873635 RGD:13792537 NCBI chr 2:211,418,557...211,526,588
Ensembl chr 2:211,418,623...211,526,587 		JBrowse link
G Sec31a SEC31 homolog A, COPII coat complex component involved_in ISO
IEA
IBA		 (PMID:17499046), (PMID:18843296)
GO_REF:0000107
PMID:21873635		 RGD
Ensembl		 PMID:17499046 PMID:18843296 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr14:9,214,324...9,269,281
Ensembl chr14:9,214,349...9,269,273 		JBrowse link
G Sec31b SEC31 homolog B, COPII coat complex component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:243,376,283...243,404,557
Ensembl chr 1:243,378,456...243,404,557 		JBrowse link
G Tbc1d20 TBC1 domain family, member 20 involved_in ISO (PMID:17684057) RGD PMID:17684057 NCBI chr 3:140,768,537...140,787,010
Ensembl chr 3:140,768,537...140,785,121 		JBrowse link
negative regulation of cargo loading into COPII-coated vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Insig1 insulin induced gene 1 involved_in ISO (PMID:15899885) RGD PMID:15899885 NCBI chr 4:7,315,494...7,323,972
Ensembl chr 4:7,315,495...7,323,952 		JBrowse link
G Sar1a secretion associated, Ras related GTPase 1A acts_upstream_of_or_within ISO (MGI:5496780|PMID:23580231) RGD PMID:23580231 MGI:5496780 NCBI chr20:29,623,529...29,635,935
Ensembl chr20:29,623,553...29,635,935 		JBrowse link
regulation of cargo loading into COPII-coated vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sar1a secretion associated, Ras related GTPase 1A acts_upstream_of_or_within ISO (MGI:4438817|PMID:19966784) RGD PMID:19966784 MGI:4438817 NCBI chr20:29,623,529...29,635,935
Ensembl chr20:29,623,553...29,635,935 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:4440619|MGI:4440621 (MGI:4438817|PMID:19966784) RGD PMID:19966784 MGI:4438817 NCBI chr 2:218,562,670...218,632,753
Ensembl chr 2:218,562,676...218,632,699 		JBrowse link
regulation of COPII vesicle coating term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mapk15 mitogen-activated protein kinase 15 involved_in ISO
IEA
ISS		 (PMID:24618899)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:24618899 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:107,694,907...107,714,640
Ensembl chr 7:107,694,964...107,714,645 		JBrowse link
G Preb prolactin regulatory element binding involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:25,418,805...25,422,594
Ensembl chr 6:25,418,776...25,422,590 		JBrowse link
G Sar1b secretion associated, Ras related GTPase 1B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:36,024,443...36,054,067
Ensembl chr10:36,024,382...36,054,066 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18737
    cellular process 17432
      cellular localization 3497
        intracellular transport 1560
          endoplasmic reticulum to Golgi vesicle-mediated transport 128
            COPII-coated vesicle budding 27
              COPII vesicle coating + 10
              COPII-coated vesicle cargo loading + 15
Path 2
Term Annotations click to browse term
  biological_process 18737
    cellular process 17432
      cellular component organization or biogenesis 6534
        cellular component organization 6309
          organelle organization 3900
            vesicle organization 305
              vesicle budding from membrane 66
                COPII-coated vesicle budding 27
                  COPII vesicle coating + 10
                  COPII-coated vesicle cargo loading + 15
paths to the root