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ONTOLOGY REPORT - ANNOTATIONS

Term:cochlea development
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Accession:GO:0090102 term browser browse the term
Definition:The progression of the cochlea over time from its formation to the mature structure. The cochlea is the snail-shaped portion of the inner ear that is responsible for the detection of sound.


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cochlea development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAM10 ADAM metallopeptidase domain 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:23,605,724...23,732,038
Ensembl chr30:23,606,517...23,731,823 		JBrowse link
G ATP2B2 ATPase plasma membrane Ca2+ transporting 2 involved_in ISO (MGI:1275896|PMID:9668038) DFLAT PMID:9668038 MGI:1275896 NCBI chr20:7,665,468...8,037,407
Ensembl chr20:7,749,807...8,034,474 		JBrowse link
G CALB1 calbindin 1 ISO RGD PMID:16120789 RGD:7175527 NCBI chr29:35,551,836...35,572,985
Ensembl chr29:35,552,436...35,572,925 		JBrowse link
G CCNA2 cyclin A2 ISO RGD PMID:19429027 RGD:10054469 NCBI chr19:18,317,866...18,324,592
Ensembl chr19:18,318,004...18,323,691 		JBrowse link
G CDH1 cadherin 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:6316556|PMID:30639848)
(PMID:21925491)		 UniProt
MGI		 PMID:21925491 PMID:30639848 MGI:6316556 NCBI chr 5:80,757,508...80,834,878
Ensembl chr 5:80,757,508...80,834,878 		JBrowse link
G CDH23 cadherin related 23 acts_upstream_of_or_within ISO (PMID:13336002) MGI PMID:13336002 NCBI chr 4:22,206,972...22,570,875
Ensembl chr 4:22,207,001...22,571,131 		JBrowse link
G CECR2 CECR2 histone acetyl-lysine reader involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21246654) Ensembl
MGI		 PMID:21246654 GO_REF:0000107 NCBI chr27:45,125,909...45,193,577
Ensembl chr27:45,125,723...45,188,890 		JBrowse link
G DCHS1 dachsous cadherin-related 1 acts_upstream_of_or_within ISO (PMID:21303848) MGI PMID:21303848 NCBI chr21:29,927,713...29,955,742
Ensembl chr21:29,928,176...29,948,713 		JBrowse link
G EPHA4 EPH receptor A4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr37:27,670,143...27,809,642
Ensembl chr37:27,677,566...27,809,646 		JBrowse link
G FGFR3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:17557302) MGI PMID:17557302 NCBI chr 3:62,309,128...62,318,932
Ensembl chr 3:62,303,756...62,323,896 		JBrowse link
G GABRA5 gamma-aminobutyric acid type A receptor subunit alpha5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:33,663,414...33,746,120
Ensembl chr 3:33,664,169...33,744,328 		JBrowse link
G GABRB2 gamma-aminobutyric acid type A receptor subunit beta2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:49,342,527...49,579,697
Ensembl chr 4:49,342,508...49,578,092 		JBrowse link
G GABRB3 gamma-aminobutyric acid type A receptor subunit beta3 involved_in ISO (MGI:3664129|PMID:17021187) DFLAT PMID:17021187 MGI:3664129 NCBI chr 3:33,878,948...34,101,987
Ensembl chr 3:33,878,904...34,097,764 		JBrowse link
G GATA2 GATA binding protein 2 ISO RGD PMID:20006695 RGD:9479067 NCBI chr20:2,472,251...2,488,380
Ensembl chr20:2,473,912...2,480,991 		JBrowse link
G GATA3 GATA binding protein 3 ISO RGD PMID:20006695 RGD:9479067 NCBI chr 2:28,068,143...28,098,445
Ensembl chr 2:28,069,051...28,087,760 		JBrowse link
G GRXCR1 glutaredoxin and cysteine rich domain containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:13336002) Ensembl
MGI		 PMID:13336002 GO_REF:0000107 NCBI chr13:39,766,910...39,882,076
Ensembl chr13:39,766,919...39,882,086 		JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18302773) Ensembl
MGI		 PMID:18302773 GO_REF:0000107
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18302773) Ensembl
MGI		 PMID:18302773 GO_REF:0000107 NCBI chr 1:64,630,656...64,646,546 JBrowse link
G HOXA1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chr14:40,267,033...40,272,212
Ensembl chr14:40,267,528...40,269,681 		JBrowse link
G IFT20 intraflagellar transport 20 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25605782) Ensembl
MGI		 PMID:25605782 GO_REF:0000107 NCBI chr 9:42,581,117...42,587,830
Ensembl chr 9:42,581,433...42,587,804 		JBrowse link
G IFT27 intraflagellar transport 27 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25605782) Ensembl
MGI		 PMID:25605782 GO_REF:0000107 NCBI chr10:27,688,742...27,707,343
Ensembl chr10:27,655,905...27,707,332 		JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:18066062) MGI PMID:18066062 NCBI chr25:17,414,965...17,551,405
Ensembl chr25:17,414,965...17,551,266 		JBrowse link
G KCNK2 potassium two pore domain channel subfamily K member 2 ISO RGD PMID:15094499 RGD:2316534 NCBI chr 7:12,893,654...13,092,319
Ensembl chr 7:12,894,149...13,090,110 		JBrowse link
G KCNK3 potassium two pore domain channel subfamily K member 3 ISO RGD PMID:15094499 RGD:2316534 NCBI chr17:20,732,779...20,771,104
Ensembl chr17:20,732,819...20,768,730 		JBrowse link
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:46,554,390...46,830,533
Ensembl chr18:46,518,908...46,830,043 		JBrowse link
G MCM2 minichromosome maintenance complex component 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:1,682,928...1,702,689
Ensembl chr20:1,682,886...1,702,366 		JBrowse link
G MUSK muscle associated receptor tyrosine kinase ISO RGD PMID:18420419 RGD:2317082 NCBI chr11:65,552,320...65,642,165
Ensembl chr11:65,551,889...65,642,349 		JBrowse link
G MYO7A myosin VIIA involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:13336002), (PMID:14198707), (PMID:6627025) Ensembl
MGI		 PMID:6627025 PMID:13336002 PMID:14198707 GO_REF:0000107 MGI:63006 NCBI chr21:21,539,735...21,624,063
Ensembl chr21:21,539,785...21,624,279 		JBrowse link
G NEUROG1 neurogenin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:23,563,128...23,564,819
Ensembl chr11:23,563,803...23,564,543 		JBrowse link
G NTRK3 neurotrophic receptor tyrosine kinase 3 ISO RGD PMID:10494076 RGD:2325650 NCBI chr 3:51,131,470...51,491,112
Ensembl chr 3:51,138,751...51,513,024 		JBrowse link
G OPA1 OPA1 mitochondrial dynamin like GTPase ISO RGD PMID:17828551 RGD:13208944 NCBI chr23:52,068,123...52,154,410
Ensembl chr23:52,068,118...52,151,593 		JBrowse link
G OTOF otoferlin ISO RGD PMID:17229086 RGD:2316502 NCBI chr17:20,518,480...20,619,713
Ensembl chr17:20,518,813...20,614,750 		JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:46,648,057...46,731,259
Ensembl chr 9:46,648,052...46,771,400 		JBrowse link
G PAX2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chr28:13,442,894...13,519,853
Ensembl chr28:13,442,893...13,532,094 		JBrowse link
G PSAP prosaposin acts_upstream_of_or_within ISO (PMID:17167097) MGI PMID:17167097 NCBI chr 4:22,571,095...22,603,880
Ensembl chr 4:22,572,153...22,603,848 		JBrowse link
G PVALB parvalbumin ISO RGD PMID:16120789 RGD:7175527 NCBI chr10:27,655,896...27,674,309
Ensembl chr10:27,655,905...27,707,332 		JBrowse link
G RPGRIP1L RPGRIP1 like involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22927466) Ensembl
MGI		 PMID:22927466 GO_REF:0000107 NCBI chr 2:62,080,159...62,179,694
Ensembl chr 2:62,080,080...62,178,284 		JBrowse link
G SLC17A8 solute carrier family 17 member 8 ISO RGD PMID:24064385 RGD:9999152 NCBI chr15:39,443,790...39,489,988
Ensembl chr15:39,443,518...39,486,595 		JBrowse link
G SLC26A5 solute carrier family 26 member 5 ISO RGD PMID:20006695 RGD:9479067 NCBI chr18:16,783,795...16,841,946
Ensembl chr18:16,788,759...16,839,940 		JBrowse link
G SLITRK6 SLIT and NTRK like family member 6 acts_upstream_of_or_within ISO (PMID:19936227) MGI PMID:19936227 NCBI chr22:37,911,533...37,918,273
Ensembl chr22:37,912,612...37,925,177 		JBrowse link
G SOBP sine oculis binding protein homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:64,653,814...64,794,144
Ensembl chr12:64,664,288...64,794,358 		JBrowse link
G TIFAB TIFA inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:23,492,317...23,495,825
Ensembl chr11:23,492,867...23,493,352 		JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:18066062) MGI PMID:18066062 NCBI chr38:21,822,873...21,824,537 JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTHRC1 collagen triple helix repeat containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18606138) Ensembl
MGI		 PMID:18606138 GO_REF:0000107 NCBI chr13:4,801,049...4,811,565
Ensembl chr13:4,805,577...4,811,282 		JBrowse link
G DVL1 dishevelled segment polarity protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16116426) Ensembl
MGI		 PMID:16116426 GO_REF:0000107 NCBI chr 5:56,507,803...56,519,382
Ensembl chr 5:56,507,739...56,519,491 		JBrowse link
G DVL2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16116426)
(PMID:19008950)		 Ensembl
MGI		 PMID:16116426 PMID:19008950 GO_REF:0000107 NCBI chr 5:32,194,326...32,201,922
Ensembl chr 5:32,194,313...32,201,857 		JBrowse link
G DVL3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO (PMID:19008950) MGI PMID:19008950 NCBI chr34:17,053,534...17,069,965
Ensembl chr34:17,053,343...17,068,389 		JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10072433) Ensembl
MGI		 PMID:10072433 GO_REF:0000107 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653 		JBrowse link
G FRZB frizzled related protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17433286) Ensembl
MGI		 PMID:17433286 GO_REF:0000107 NCBI chr36:25,884,557...25,907,436
Ensembl chr36:25,884,557...25,907,369 		JBrowse link
G FZD2 frizzled class receptor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20940229) Ensembl
MGI		 PMID:20940229 GO_REF:0000107 NCBI chr 9:18,888,711...18,890,549
Ensembl chr 9:18,888,696...18,890,525 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17395647) Ensembl
MGI		 PMID:17395647 GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
G GRHL3 grainyhead like transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20643356) Ensembl
MGI		 PMID:20643356 GO_REF:0000107 NCBI chr 2:75,290,594...75,324,593
Ensembl chr 2:75,290,596...75,324,496 		JBrowse link
G HOXA1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chr14:40,267,033...40,272,212
Ensembl chr14:40,267,528...40,269,681 		JBrowse link
G HPN hepsin involved_in ISO (MGI:5306554|PMID:20683358) UniProt PMID:20683358 MGI:5306554 NCBI chr 1:117,486,308...117,503,127
Ensembl chr 1:117,486,340...117,502,583 		JBrowse link
G MYO3A myosin IIIA involved_in ISO (MGI:5766107|PMID:26754646) UniProt PMID:26754646 MGI:5766107 NCBI chr 2:7,455,125...7,695,483
Ensembl chr 2:7,455,625...7,696,043 		JBrowse link
G MYO3B myosin IIIB involved_in ISO (MGI:5766107|PMID:26754646) UniProt PMID:26754646 MGI:5766107 NCBI chr36:14,804,662...15,229,597
Ensembl chr36:14,803,514...15,209,820 		JBrowse link
G NEUROG1 neurogenin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:23,563,128...23,564,819
Ensembl chr11:23,563,803...23,564,543 		JBrowse link
G PAX2 paired box 2 involved_in
acts_upstream_of_or_within		 ISO (MGI:84247|PMID:8951055)
(MGI:4822275|PMID:20727173)
(PMID:16916509)		 DFLAT
UniProt
MGI		 PMID:8951055 PMID:16916509 PMID:20727173 MGI:4822275 MGI:84247 NCBI chr28:13,442,894...13,519,853
Ensembl chr28:13,442,893...13,532,094 		JBrowse link
G POU3F4 POU class 3 homeobox 4 involved_in ISO (MGI:5284768|PMID:18231833) UniProt PMID:18231833 MGI:5284768 NCBI chr  X:64,427,161...64,428,825
Ensembl chr  X:64,427,325...64,428,410 		JBrowse link
G PTK7 protein tyrosine kinase 7 (inactive) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20704721) Ensembl
MGI		 PMID:20704721 GO_REF:0000107 NCBI chr12:11,593,017...11,657,149
Ensembl chr12:11,593,043...11,656,320 		JBrowse link
G RAC1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:20016102) MGI PMID:20016102 NCBI chr 6:11,726,259...11,758,532
Ensembl chr 6:11,655,494...11,757,216 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12874121) Ensembl
MGI		 PMID:12874121 GO_REF:0000107 NCBI chr 8:35,676,705...35,679,534
Ensembl chr 8:35,676,479...35,679,534 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 (PMID:20346939) UniProt
Ensembl
MGI		 PMID:20346939 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172 		JBrowse link
G TBX1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:5284768|PMID:18231833)
(PMID:17825816)		 UniProt
MGI		 PMID:17825816 PMID:18231833 MGI:5284768 NCBI chr26:29,529,071...29,533,240
Ensembl chr26:29,528,878...29,532,784 		JBrowse link
G TBX18 T-box transcription factor 18 acts_upstream_of_or_within ISO (PMID:18353863) MGI PMID:18353863 NCBI chr12:44,901,076...44,929,730
Ensembl chr12:44,873,119...44,929,205 		JBrowse link
G TBX2 T-box transcription factor 2 involved_in ISO (MGI:6710296|PMID:33795231) UniProt PMID:33795231 MGI:6710296 NCBI chr 9:35,237,323...35,245,066
Ensembl chr 9:35,235,649...35,245,736 		JBrowse link
G TIFAB TIFA inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:23,492,317...23,495,825
Ensembl chr11:23,492,867...23,493,352 		JBrowse link
G TSHR thyroid stimulating hormone receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10575115) Ensembl
MGI		 PMID:10575115 GO_REF:0000107 NCBI chr 8:53,327,280...53,482,898
Ensembl chr 8:53,326,655...53,482,898 		JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:20940229)
(PMID:19008950)
(PMID:20643356)
(PMID:16116426), (PMID:18606138)
(PMID:17433286)		 MGI PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 More... NCBI chr38:21,822,873...21,824,537 JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17433286) Ensembl
MGI		 PMID:17433286 GO_REF:0000107 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673 		JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21980308) Ensembl
MGI		 PMID:21980308 GO_REF:0000107 NCBI chr 2:15,300,401...15,481,535
Ensembl chr 2:15,299,723...15,481,495 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17878
    developmental process 6855
      anatomical structure development 6433
        cochlea development 66
          cochlea morphogenesis 28
Path 2
Term Annotations click to browse term
  biological_process 17878
    developmental process 6855
      anatomical structure development 6433
        animal organ development 3575
          sensory organ development 739
            ear development 278
              inner ear development 249
                cochlea development 66
                  cochlea morphogenesis 28
paths to the root