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ONTOLOGY REPORT - ANNOTATIONS


Term:SA node cell to atrial cardiac muscle cell communication
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Accession:GO:0086070 term browser browse the term
Definition:The process that mediates interactions between an SA node cardiomyocyte and its surroundings that contributes to the process of the SA node cardiomyocyte communicating with an atrial cardiomyocyte in cardiac conduction. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
Synonyms:exact_synonym: SA node cardiac muscle cell to atrial cardiac muscle cell communication;   SA node cardiomyocyte to atrial cardiomyocyte communication;   SAN cardiomyocyte to atrial cardiomyocyte communication;   sinoatrial node cardiomyocyte to atrial cardiomyocyte communication
 narrow_synonym: sinus node cardiomyocyte to atrial cardiomyocyte communication



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SA node cell to atrial cardiac muscle cell communication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANK2 ankyrin 2 involved_in ISO (PMID:12571597), (PMID:18832177), (PMID:21859974)
(MGI:5430886|PMID:18832177)
BHF-UCL PMID:12571597 PMID:18832177 PMID:21859974 MGI:5430886 NCBI chr 8:109,306,793...109,661,970 JBrowse link
membrane depolarization during SA node cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACNA1D calcium voltage-gated channel subunit alpha1 D involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3583874|PMID:12700358) Ensembl
MGI
Ensembl
PMID:12700358 GO_REF:0000107 MGI:3583874 NCBI chr13:35,568,534...35,911,483
Ensembl chr13:35,436,519...35,909,662
JBrowse link
G CACNA1G calcium voltage-gated channel subunit alpha1 G involved_in ISO (MGI:3714901|PMID:16690884) BHF-UCL PMID:16690884 MGI:3714901 NCBI chr12:26,838,633...26,912,344
Ensembl chr12:26,844,079...26,912,110
JBrowse link
G HCN4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:60,010,396...60,052,258
Ensembl chr 7:60,010,283...60,050,689
JBrowse link
G SCN5A sodium voltage-gated channel alpha subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:23,336,143...23,424,755
Ensembl chr13:23,336,153...23,424,755
JBrowse link
membrane repolarization during SA node cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KCNA5 potassium voltage-gated channel subfamily A member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:65,439,336...65,442,207
Ensembl chr 5:65,439,336...65,442,207
JBrowse link
regulation of SA node cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANK2 ankyrin 2 involved_in ISO (PMID:12571597), (PMID:18832177)
(MGI:2449848|PMID:12571597)
BHF-UCL PMID:12571597 PMID:18832177 MGI:2449848 NCBI chr 8:109,306,793...109,661,970 JBrowse link
G RYR2 ryanodine receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:53,652,140...54,406,691
Ensembl chr14:53,652,485...54,192,063
JBrowse link
G TBX18 T-box transcription factor 18 involved_in
acts_upstream_of
IEA
ISO
(PMID:23242162) Ensembl
Ensembl
BHF-UCL
PMID:23242162 GO_REF:0000107 NCBI chr 1:53,836,939...53,867,460
Ensembl chr 1:53,838,189...53,867,254
JBrowse link
SA node cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANK2 ankyrin 2 involved_in ISO (MGI:5430886|PMID:18832177) BHF-UCL PMID:18832177 MGI:5430886 NCBI chr 8:109,306,793...109,661,970 JBrowse link
G CACNA1G calcium voltage-gated channel subunit alpha1 G involved_in ISO (MGI:3714901|PMID:16690884) BHF-UCL PMID:16690884 MGI:3714901 NCBI chr12:26,838,633...26,912,344
Ensembl chr12:26,844,079...26,912,110
JBrowse link
G GJA5 gap junction protein alpha 5 acts_upstream_of_or_within ISO (MGI:3664488|PMID:11046183) MGI PMID:11046183 MGI:3664488 NCBI chr 4:99,854,129...99,871,288
Ensembl chr 4:99,854,392...99,871,286
JBrowse link
G HCN4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:60,010,396...60,052,258
Ensembl chr 7:60,010,283...60,050,689
JBrowse link
G SCN3B sodium voltage-gated channel beta subunit 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:50,508,194...50,532,432
Ensembl chr 9:50,508,880...50,583,712
JBrowse link
G SCN5A sodium voltage-gated channel alpha subunit 5 involved_in ISO (PMID:18616619) BHF-UCL PMID:18616619 NCBI chr13:23,336,143...23,424,755
Ensembl chr13:23,336,153...23,424,755
JBrowse link
SA node cell to atrial cardiac muscle cell signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACNA1G calcium voltage-gated channel subunit alpha1 G involved_in ISO (MGI:3714901|PMID:16690884) BHF-UCL PMID:16690884 MGI:3714901 NCBI chr12:26,838,633...26,912,344
Ensembl chr12:26,844,079...26,912,110
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17484
    cellular process 16257
      cell communication 7257
        cell communication involved in cardiac conduction 41
          SA node cell to atrial cardiac muscle cell communication 10
            SA node cell to atrial cardiac muscle cell communication by electrical coupling 0
            SA node cell to atrial cardiac muscle cell signaling + 10
            SA node cell-atrial cardiac muscle cell adhesion involved in cell communication 0
Path 2
Term Annotations click to browse term
  biological_process 17484
    multicellular organismal process 8675
      system process 3318
        circulatory system process 578
          blood circulation 547
            regulation of blood circulation 284
              regulation of heart contraction 210
                cardiac conduction 68
                  cell communication involved in cardiac conduction 41
                    SA node cell to atrial cardiac muscle cell communication 10
                      SA node cell to atrial cardiac muscle cell communication by electrical coupling 0
                      SA node cell to atrial cardiac muscle cell signaling + 10
                      SA node cell-atrial cardiac muscle cell adhesion involved in cell communication 0
paths to the root