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ONTOLOGY REPORT - ANNOTATIONS


Term:SA node cell to atrial cardiac muscle cell communication
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Accession:GO:0086070 term browser browse the term
Definition:The process that mediates interactions between an SA node cardiomyocyte and its surroundings that contributes to the process of the SA node cardiomyocyte communicating with an atrial cardiomyocyte in cardiac conduction. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
Synonyms:exact_synonym: SA node cardiac muscle cell to atrial cardiac muscle cell communication;   SA node cardiomyocyte to atrial cardiomyocyte communication;   SAN cardiomyocyte to atrial cardiomyocyte communication;   sinoatrial node cardiomyocyte to atrial cardiomyocyte communication
 narrow_synonym: sinus node cardiomyocyte to atrial cardiomyocyte communication



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SA node cell to atrial cardiac muscle cell communication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANK2 ankyrin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr32:32,484,196...33,143,295
Ensembl chr32:32,671,281...33,141,036
JBrowse link
membrane depolarization during SA node cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACNA1D calcium voltage-gated channel subunit alpha1 D involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3583874|PMID:12700358) Ensembl
MGI
Ensembl
PMID:12700358 GO_REF:0000107 MGI:3583874 NCBI chr20:36,189,986...36,488,460
Ensembl chr20:36,191,810...36,613,686
JBrowse link
G CACNA1G calcium voltage-gated channel subunit alpha1 G involved_in ISO (MGI:3714901|PMID:16690884) BHF-UCL PMID:16690884 MGI:3714901 NCBI chr 9:26,481,148...26,544,511
Ensembl chr 9:26,481,652...26,544,845
JBrowse link
G HCN4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:36,637,492...36,656,194
Ensembl chr30:36,639,908...36,656,406
JBrowse link
G SCN5A sodium voltage-gated channel alpha subunit 5 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr23:8,278,844...8,374,614
Ensembl chr23:8,280,793...8,358,560
JBrowse link
membrane repolarization during SA node cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KCNA5 potassium voltage-gated channel subfamily A member 5 involved_in ISO (PMID:19343045) BHF-UCL PMID:19343045 NCBI chr27:39,808,987...39,810,789
Ensembl chr27:39,756,363...39,811,035
JBrowse link
G KCNA5 potassium voltage-gated channel subfamily A member 5 involved_in IEA Ensembl GO_REF:0000107
regulation of SA node cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANK2 ankyrin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr32:32,484,196...33,143,295
Ensembl chr32:32,671,281...33,141,036
JBrowse link
G RYR2 ryanodine receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:2,371,868...2,908,132
Ensembl chr 4:2,373,114...2,907,875
JBrowse link
G TBX18 T-box transcription factor 18 acts_upstream_of
involved_in
ISO
IEA
(PMID:23242162) BHF-UCL
Ensembl
Ensembl
PMID:23242162 GO_REF:0000107 NCBI chr12:44,901,076...44,929,730
Ensembl chr12:44,873,119...44,929,205
JBrowse link
SA node cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANK2 ankyrin 2 involved_in ISO (MGI:5430886|PMID:18832177) BHF-UCL PMID:18832177 MGI:5430886 NCBI chr32:32,484,196...33,143,295
Ensembl chr32:32,671,281...33,141,036
JBrowse link
G CACNA1G calcium voltage-gated channel subunit alpha1 G involved_in ISO (MGI:3714901|PMID:16690884) BHF-UCL PMID:16690884 MGI:3714901 NCBI chr 9:26,481,148...26,544,511
Ensembl chr 9:26,481,652...26,544,845
JBrowse link
G GJA5 gap junction protein alpha 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3664488|PMID:11046183) Ensembl
MGI
PMID:11046183 GO_REF:0000107 MGI:3664488 NCBI chr17:58,289,327...58,305,315
Ensembl chr17:58,289,327...58,305,315
JBrowse link
G HCN4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:36,637,492...36,656,194
Ensembl chr30:36,639,908...36,656,406
JBrowse link
G SCN3B sodium voltage-gated channel beta subunit 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:10,783,235...10,808,342
Ensembl chr 5:10,783,325...10,804,242
JBrowse link
G SCN5A sodium voltage-gated channel alpha subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:8,278,844...8,374,614
Ensembl chr23:8,280,793...8,358,560
JBrowse link
SA node cell to atrial cardiac muscle cell signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACNA1G calcium voltage-gated channel subunit alpha1 G involved_in ISO (MGI:3714901|PMID:16690884) BHF-UCL PMID:16690884 MGI:3714901 NCBI chr 9:26,481,148...26,544,511
Ensembl chr 9:26,481,652...26,544,845
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17438
    cellular process 16174
      cell communication 6791
        cell communication involved in cardiac conduction 42
          SA node cell to atrial cardiac muscle cell communication 11
            SA node cell to atrial cardiac muscle cell communication by electrical coupling 0
            SA node cell to atrial cardiac muscle cell signaling + 11
            SA node cell-atrial cardiac muscle cell adhesion involved in cell communication 0
Path 2
Term Annotations click to browse term
  biological_process 17438
    multicellular organismal process 8261
      system process 2855
        circulatory system process 592
          blood circulation 561
            regulation of blood circulation 289
              regulation of heart contraction 215
                cardiac conduction 70
                  cell communication involved in cardiac conduction 42
                    SA node cell to atrial cardiac muscle cell communication 11
                      SA node cell to atrial cardiac muscle cell communication by electrical coupling 0
                      SA node cell to atrial cardiac muscle cell signaling + 11
                      SA node cell-atrial cardiac muscle cell adhesion involved in cell communication 0
paths to the root