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ONTOLOGY REPORT - ANNOTATIONS


Term:extracellular matrix assembly
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Accession:GO:0085029 term browser browse the term
Definition:The aggregation, arrangement and bonding together of the extracellular matrix.


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extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a2 collagen type I alpha 2 chain acts_upstream_of_or_within ISO (MGI:5468210|PMID:22910579) MGI PMID:22910579 MGI:5468210 NCBI chrNW_004936585:5,650,322...5,686,393 JBrowse link
G Fkbp10 FKBP prolyl isomerase 10 acts_upstream_of_or_within ISO (MGI:6094666|PMID:28774593) MGI PMID:28774593 MGI:6094666 NCBI chrNW_004936490:16,712,843...16,720,438 JBrowse link
G Gas6 growth arrest specific 6 involved_in ISO PMID:18374201 UniProt PMID:18374201 RGD:8554638 NCBI chrNW_004936472:27,116...57,158 JBrowse link
G Gpm6b glycoprotein M6B involved_in ISO (PMID:21638316) UniProt PMID:21638316 NCBI chrNW_004936470:3,332,856...3,496,178 JBrowse link
G Hapln2 hyaluronan and proteoglycan link protein 2 acts_upstream_of_or_within ISO (MGI:4437139|PMID:20181608) MGI PMID:20181608 MGI:4437139 NCBI chrNW_004936580:5,792,421...5,811,096 JBrowse link
G Has1 hyaluronan synthase 1 involved_in ISO (MGI:5508296|PMID:10455188) UniProt PMID:10455188 MGI:5508296 NCBI chrNW_004937026:125,622...132,141 JBrowse link
G Has2 hyaluronan synthase 2 involved_in ISO (MGI:5508296|PMID:10455188) UniProt PMID:10455188 MGI:5508296 NCBI chrNW_004936470:25,418,069...25,443,332 JBrowse link
G Has3 hyaluronan synthase 3 involved_in ISO (MGI:5508296|PMID:10455188) UniProt PMID:10455188 MGI:5508296 NCBI chrNW_004936475:19,270,788...19,282,922 JBrowse link
G Qsox1 quiescin sulfhydryl oxidase 1 involved_in ISO (PMID:23867277) UniProt PMID:23867277 NCBI chrNW_004936481:8,975,818...9,013,684 JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO (MGI:5468210|PMID:22910579) MGI PMID:22910579 MGI:5468210 NCBI chrNW_004936475:18,667,563...18,755,132 JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO (PMID:19734317)
(MGI:4820704|PMID:19734317)
BHF-UCL PMID:19734317 MGI:4820704 NCBI chrNW_004936661:3,742,080...3,758,266 JBrowse link
basement membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 acts_upstream_of_or_within ISO (MGI:3618677|PMID:16467571) MGI PMID:16467571 MGI:3618677 NCBI chrNW_004936543:1,090,268...1,097,170 JBrowse link
G Ramp2 receptor activity modifying protein 2 involved_in ISO (MGI:3772552|PMID:18097473) UniProt PMID:18097473 MGI:3772552 NCBI chrNW_004936490:17,479,899...17,481,788 JBrowse link
elastic fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (MGI:3616522|PMID:16338116)
(MGI:54141|PMID:937819), (MGI:54357|PMID:20889), (MGI:63907|PMID:3385878)
MGI PMID:20889 PMID:937819 PMID:3385878 PMID:16338116 MGI:3616522 MGI:54141 MGI:54357 MGI:63907 NCBI chrNW_004936683:2,874,022...2,936,214 JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 involved_in
acts_upstream_of_or_within
ISO (PMID:18973305), (PMID:27339457)
(MGI:3619755|PMID:16478991), (MGI:4947512|PMID:20019329), (MGI:5660411|PMID:26178373), (MGI:6140729|PMID:28508064), (MGI:6158865|PMID:26711913)
(MGI:4397710|PMID:19855011)
UniProt
MGI
PMID:16478991 PMID:18973305 PMID:19855011 PMID:20019329 PMID:26178373 PMID:26711913 PMID:27339457 PMID:28508064 MGI:3619755 MGI:4397710 MGI:4947512 MGI:5660411 MGI:6140729 MGI:6158865 NCBI chrNW_004936599:3,663,288...3,670,048 JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in ISO (MGI:5605894|PMID:25056700) BHF-UCL PMID:25056700 MGI:5605894 NCBI chrNW_004936493:5,455,369...5,463,205 JBrowse link
G Fbln5 fibulin 5 involved_in ISO (PMID:17035250)
(MGI:2681470|PMID:11805835), (MGI:2681471|PMID:11805834)
UniProt
BHF-UCL
PMID:11805834 PMID:11805835 PMID:17035250 MGI:2681470 MGI:2681471 NCBI chrNW_004936733:136,374...200,106 JBrowse link
G Lox lysyl oxidase acts_upstream_of_or_within ISO (MGI:3604822|PMID:16192629), (MGI:3609311|PMID:12417550)
(MGI:5616293|PMID:23413430)
RGD
MGI
PMID:12417550 PMID:16192629 PMID:16432278 PMID:23413430 MGI:3604822 MGI:3609311 MGI:5616293 RGD:1600669 NCBI chrNW_004936575:2,526,067...2,533,996 JBrowse link
G Ltbp4 latent transforming growth factor beta binding protein 4 involved_in ISO (MGI:5638486|PMID:25713297) UniProt PMID:25713297 MGI:5638486 NCBI chrNW_004936661:2,919,444...2,945,847 JBrowse link
G Mfap4 microfibril associated protein 4 involved_in ISO (PMID:22355679) BHF-UCL PMID:22355679 NCBI chrNW_004936881:369,161...372,628 JBrowse link
G Myh11 myosin heavy chain 11 involved_in ISO (PMID:16444274) UniProt PMID:16444274 NCBI chrNW_004936501:3,223,057...3,313,487 JBrowse link
G Thsd4 thrombospondin type 1 domain containing 4 acts_upstream_of_or_within ISO (MGI:4453293|PMID:19940141) MGI PMID:19940141 MGI:4453293 NCBI chrNW_004936471:31,002,241...31,213,057 JBrowse link
G Tnxb tenascin XB involved_in ISO (PMID:15102077) UniProt PMID:15102077 NCBI chrNW_004936727:1,492,725...1,550,762 JBrowse link
negative regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Antxr1 ANTXR cell adhesion molecule 1 acts_upstream_of_or_within ISO (MGI:5662198|PMID:25572963) MGI PMID:25572963 MGI:5662198 NCBI chrNW_004936491:13,288,986...13,516,878 JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 cytoplasmic linker associated protein 1 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004936469:49,067,357...49,335,212 JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004936473:23,756,291...23,940,966 JBrowse link
G Dag1 dystroglycan 1 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004936529:1,099,510...1,171,587 JBrowse link
G Phldb1 pleckstrin homology like domain family B member 1 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004936542:3,639,992...3,688,000 JBrowse link
G Phldb2 pleckstrin homology like domain family B member 2 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004936834:592,688...791,533 JBrowse link
positive regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emilin1 elastin microfibril interfacer 1 involved_in ISO (MGI:5605894|PMID:25056700) BHF-UCL PMID:25056700 MGI:5605894 NCBI chrNW_004936493:5,455,369...5,463,205 JBrowse link
G Rgcc regulator of cell cycle involved_in ISO (PMID:21307346) BHF-UCL PMID:21307346 NCBI chrNW_004936667:232,807...245,131 JBrowse link
G Smad3 SMAD family member 3 involved_in ISO (PMID:21307346) BHF-UCL PMID:21307346 NCBI chrNW_004936471:27,080,662...27,185,861 JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (MGI:4848001|PMID:20881014) MGI PMID:20881014 MGI:4848001 NCBI chrNW_004936655:1,849,044...1,852,648 JBrowse link
regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in ISO (PMID:17416596) BHF-UCL PMID:17416596 NCBI chrNW_004936484:19,713,299...19,721,144 JBrowse link
G Has2 hyaluronan synthase 2 ISO RGD PMID:27094859 RGD:12910548 NCBI chrNW_004936470:25,418,069...25,443,332 JBrowse link
G Notch1 notch receptor 1 involved_in ISO (MGI:5298073|PMID:21311046) BHF-UCL PMID:21311046 MGI:5298073 NCBI chrNW_004936669:1,292,016...1,334,061 JBrowse link
G Tie1 tyrosine kinase with immunoglobulin like and EGF like domains 1 acts_upstream_of ISO (MGI:6370101|PMID:31319059) BHF-UCL PMID:31319059 MGI:6370101 NCBI chrNW_004936474:24,709,424...24,729,246 JBrowse link
vitelline membrane formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:3766861|PMID:17881493) MGI PMID:17881493 MGI:3766861 NCBI chrNW_004936569:1,474,693...1,480,562 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12130
    cellular process 11319
      cellular component organization or biogenesis 5024
        cellular component organization 4943
          cellular component assembly 2286
            extracellular matrix assembly 36
              basement membrane assembly + 7
              biofilm matrix assembly 0
              elastic fiber assembly 10
              negative regulation of extracellular matrix assembly + 1
              positive regulation of extracellular matrix assembly + 9
              regulation of extracellular matrix assembly + 14
              vitelline membrane formation + 1
Path 2
Term Annotations click to browse term
  biological_process 12130
    cellular process 11319
      cellular component organization or biogenesis 5024
        cellular component organization 4943
          extracellular structure organization 231
            extracellular matrix organization 230
              extracellular matrix assembly 36
                basement membrane assembly + 7
                biofilm matrix assembly 0
                elastic fiber assembly 10
                negative regulation of extracellular matrix assembly + 1
                positive regulation of extracellular matrix assembly + 9
                regulation of extracellular matrix assembly + 14
                vitelline membrane formation + 1
paths to the root