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ONTOLOGY REPORT - ANNOTATIONS


Term:extracellular matrix assembly
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Accession:GO:0085029 term browser browse the term
Definition:The aggregation, arrangement and bonding together of the extracellular matrix.


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extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL1A2 collagen type I alpha 2 chain involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5468210|PMID:22910579) Ensembl
MGI
PMID:22910579 GO_REF:0000107 MGI:5468210 NCBI chr 9:74,174,484...74,210,407
Ensembl chr 9:74,173,931...74,210,398
JBrowse link
G FKBP10 FKBP prolyl isomerase 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6094666|PMID:28774593) Ensembl
MGI
PMID:28774593 GO_REF:0000107 MGI:6094666 NCBI chr12:20,872,155...20,881,604
Ensembl chr12:20,872,155...20,882,644
JBrowse link
G GAS6 growth arrest specific 6 involved_in ISO PMID:18374201 UniProt PMID:18374201 RGD:8554638 NCBI chr11:78,848,797...78,880,733
Ensembl chr11:78,848,794...78,881,272
JBrowse link
G GPM6B glycoprotein M6B involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:10,429,496...10,582,768
Ensembl chr  X:10,430,281...10,643,429
JBrowse link
G HAPLN2 hyaluronan and proteoglycan link protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4437139|PMID:20181608) Ensembl
MGI
PMID:20181608 GO_REF:0000107 MGI:4437139 NCBI chr 4:93,462,306...93,468,394
Ensembl chr 4:93,462,308...93,467,802
JBrowse link
G HAS1 hyaluronan synthase 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:58,303,274...58,313,486
Ensembl chr 6:58,307,029...58,313,486
JBrowse link
G HAS3 hyaluronan synthase 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:17,844,974...17,870,331
Ensembl chr 6:17,843,882...17,853,011
JBrowse link
G QSOX1 quiescin sulfhydryl oxidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:121,779,072...121,822,829
Ensembl chr 9:121,779,796...121,837,437
JBrowse link
G SHAS2 hyaluronan synthase 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:17,583,154...17,613,524
Ensembl chr 4:17,596,472...17,675,586
JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO (MGI:5468210|PMID:22910579) MGI PMID:22910579 MGI:5468210 NCBI chr 6:28,938,287...29,025,397
Ensembl chr 6:28,938,290...29,025,357
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 6:49,332,169...49,348,642
Ensembl chr 6:49,332,169...49,349,048
JBrowse link
basement membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMB1 laminin subunit beta 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:107,670,120...107,747,242
Ensembl chr 9:107,671,152...107,772,269
JBrowse link
G LAMB2 laminin subunit beta 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:31,738,282...31,750,623
Ensembl chr13:31,738,284...31,771,220
JBrowse link
G LAMB3 laminin subunit beta 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:133,298,009...133,351,162
Ensembl chr 9:133,311,834...133,351,197
JBrowse link
G NTN4 netrin 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:87,671,153...87,784,704
Ensembl chr 5:87,671,873...87,784,704
JBrowse link
G NTNG1 netrin G1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:112,280,899...112,615,782
Ensembl chr 4:112,287,043...112,614,544
JBrowse link
G PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3618677|PMID:16467571) Ensembl
MGI
PMID:16467571 GO_REF:0000107 MGI:3618677 NCBI chr 3:8,911,787...8,919,525
Ensembl chr 3:8,911,787...8,919,516
JBrowse link
G RAMP2 receptor activity modifying protein 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr12:20,092,204...20,094,426
Ensembl chr12:20,092,193...20,094,474
JBrowse link
elastic fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha acts_upstream_of_or_within ISO (MGI:3616522|PMID:16338116)
(MGI:54141|PMID:937819), (MGI:54357|PMID:20889), (MGI:63907|PMID:3385878)
MGI PMID:20889 PMID:937819 PMID:3385878 PMID:16338116 MGI:3616522 MGI:54141 MGI:54357 MGI:63907 NCBI chr  X:61,972,544...62,110,058
Ensembl chr  X:61,972,874...62,110,058
JBrowse link
G EFEMP2 EGF containing fibulin extracellular matrix protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4397710|PMID:19855011) InterPro
MGI
Ensembl
PMID:19855011 GO_REF:0000002 GO_REF:0000107 MGI:4397710 NCBI chr 2:6,455,155...6,463,493
Ensembl chr 2:6,450,332...6,463,493
JBrowse link
G EMILIN1 elastin microfibril interfacer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:112,031,910...112,039,928
Ensembl chr 3:112,031,919...112,046,437
JBrowse link
G FBLN5 fibulin 5 involved_in IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 7:113,423,629...113,526,412
Ensembl chr 7:113,423,629...113,522,069
JBrowse link
G LOX lysyl oxidase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3604822|PMID:16192629), (MGI:3609311|PMID:12417550)
(MGI:5616293|PMID:23413430)
Ensembl
MGI
RGD
PMID:12417550 PMID:16192629 PMID:16432278 PMID:23413430 GO_REF:0000107 MGI:3604822 MGI:3609311 MGI:5616293 RGD:1600669 NCBI chr 2:125,595,115...125,607,026
Ensembl chr 2:125,593,116...125,607,594
JBrowse link
G LTBP3 latent transforming growth factor beta binding protein 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:6,701,455...6,720,191
Ensembl chr 2:6,701,340...6,720,172
JBrowse link
G LTBP4 latent transforming growth factor beta binding protein 4 involved_in ISO (MGI:5638486|PMID:25713297) UniProt PMID:25713297 MGI:5638486 NCBI chr 6:48,831,018...48,861,503
Ensembl chr 6:48,831,014...48,861,507
JBrowse link
G MFAP4 microfibril associated protein 4 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr12:60,141,488...60,144,214
Ensembl chr12:60,137,566...60,144,201
JBrowse link
G MYH11 myosin heavy chain 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:7,002,667...7,143,093
Ensembl chr 3:7,002,733...7,143,094
JBrowse link
G THSD4 thrombospondin type 1 domain containing 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4453293|PMID:19940141) Ensembl
MGI
PMID:19940141 GO_REF:0000107 MGI:4453293 NCBI chr 1:168,751,403...169,328,559
Ensembl chr 1:168,751,423...169,323,977
JBrowse link
G TNXB tenascin XB involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:24,088,873...24,155,815
Ensembl chr 7:24,088,873...24,155,815
JBrowse link
negative regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANTXR1 ANTXR cell adhesion molecule 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5662198|PMID:25572963) Ensembl
MGI
PMID:25572963 GO_REF:0000107 MGI:5662198 NCBI chr 3:73,157,744...73,398,379
Ensembl chr 3:73,157,752...73,398,345
JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLASP1 cytoplasmic linker associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:29,782,613...30,042,727
Ensembl chr15:29,782,604...30,042,734
JBrowse link
G CLASP2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chr13:19,305,430...19,510,589
Ensembl chr13:19,305,180...19,510,585
JBrowse link
G DAG1 dystroglycan 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:32,028,019...32,092,450
Ensembl chr13:32,029,329...32,092,453
JBrowse link
G PHLDB1 pleckstrin homology like domain family B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:45,902,099...45,949,415
Ensembl chr 9:45,902,105...45,949,417
JBrowse link
G PHLDB2 pleckstrin homology like domain family B member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:147,778,420...148,025,943
Ensembl chr13:147,778,053...148,087,744
JBrowse link
G PLCXD2 phosphatidylinositol specific phospholipase C X domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:148,033,712...148,087,766
Ensembl chr13:147,778,053...148,087,744
JBrowse link
positive regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EMILIN1 elastin microfibril interfacer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:112,031,910...112,039,928
Ensembl chr 3:112,031,919...112,046,437
JBrowse link
G RGCC regulator of cell cycle involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:25,481,845...25,496,548
Ensembl chr11:25,478,877...25,496,519
JBrowse link
G SMAD3 SMAD family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:164,998,457...165,124,455
Ensembl chr 1:164,998,083...165,124,454
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4848001|PMID:20881014) Ensembl
MGI
PMID:20881014 GO_REF:0000107 MGI:4848001 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315
JBrowse link
regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGT angiotensinogen involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:59,643,030...59,656,835
Ensembl chr14:59,643,292...59,672,428
JBrowse link
G NOTCH1 notch receptor 1 involved_in IEA Ensembl GO_REF:0000107
G SHAS2 hyaluronan synthase 2 ISO RGD PMID:27094859 RGD:12910548 NCBI chr 4:17,583,154...17,613,524
Ensembl chr 4:17,596,472...17,675,586
JBrowse link
G TIE1 tyrosine kinase with immunoglobulin like and EGF like domains 1 involved_in
acts_upstream_of
IEA
ISO
(MGI:6370101|PMID:31319059) Ensembl
BHF-UCL
PMID:31319059 GO_REF:0000107 MGI:6370101 NCBI chr 6:167,919,662...167,947,253
Ensembl chr 6:167,919,668...167,940,874
JBrowse link
vitelline membrane formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3766861|PMID:17881493) Ensembl
MGI
PMID:17881493 GO_REF:0000107 MGI:3766861 NCBI chr15:121,083,750...121,090,548
Ensembl chr15:121,083,753...121,090,121
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16534
    cellular process 15811
      cellular component organization or biogenesis 6067
        cellular component organization 5898
          cellular component assembly 2760
            extracellular matrix assembly 43
              basement membrane assembly + 13
              biofilm matrix assembly 0
              elastic fiber assembly 11
              negative regulation of extracellular matrix assembly + 1
              positive regulation of extracellular matrix assembly + 10
              regulation of extracellular matrix assembly + 15
              vitelline membrane formation + 1
Path 2
Term Annotations click to browse term
  biological_process 16534
    cellular process 15811
      cellular component organization or biogenesis 6067
        cellular component organization 5898
          extracellular structure organization 300
            extracellular matrix organization 298
              extracellular matrix assembly 43
                basement membrane assembly + 13
                biofilm matrix assembly 0
                elastic fiber assembly 11
                negative regulation of extracellular matrix assembly + 1
                positive regulation of extracellular matrix assembly + 10
                regulation of extracellular matrix assembly + 15
                vitelline membrane formation + 1
paths to the root