Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:extracellular matrix assembly
go back to main search page
Accession:GO:0085029 term browser browse the term
Definition:The aggregation, arrangement and bonding together of the extracellular matrix.


show annotations for term's descendants           Sort by:
 
extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL1A2 collagen type I alpha 2 chain involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5468210|PMID:22910579) Ensembl
MGI
PMID:22910579 GO_REF:0000107 MGI:5468210 NCBI chr 7:94,394,895...94,431,227
Ensembl chr 7:94,394,895...94,431,227
Ensembl chr 7:94,394,895...94,431,227
JBrowse link
G FKBP10 FKBP prolyl isomerase 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6094666|PMID:28774593) Ensembl
MGI
PMID:28774593 GO_REF:0000107 MGI:6094666 NCBI chr17:41,812,938...41,823,215
Ensembl chr17:41,812,680...41,823,213
Ensembl chr17:41,812,680...41,823,213
JBrowse link
G GAS6 growth arrest specific 6 involved_in ISS UniProt GO_REF:0000024 NCBI chr13:113,820,549...113,864,076
Ensembl chr13:113,820,549...113,864,076
JBrowse link
G GPM6B glycoprotein M6B involved_in IMP (PMID:21638316) UniProt PMID:21638316 NCBI chr  X:13,770,922...13,938,713
Ensembl chr  X:13,770,939...13,938,638
JBrowse link
G HAPLN2 hyaluronan and proteoglycan link protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4437139|PMID:20181608) Ensembl
MGI
PMID:20181608 GO_REF:0000107 MGI:4437139 NCBI chr 1:156,601,504...156,626,608
Ensembl chr 1:156,619,331...156,625,725
JBrowse link
G HAS1 hyaluronan synthase 1 involved_in ISS
IEA
IBA
(PMID:21873635) UniProt
Ensembl
GO_Central
PMID:21873635 GO_REF:0000024 GO_REF:0000107 NCBI chr19:51,713,112...51,723,991
Ensembl chr19:51,713,112...51,723,994
Ensembl chr19:51,713,112...51,723,994
JBrowse link
G HAS2 hyaluronan synthase 2 involved_in ISS
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 8:121,612,116...121,641,440
Ensembl chr 8:121,612,116...121,641,440
JBrowse link
G HAS3 hyaluronan synthase 3 involved_in IBA
ISS
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000024 NCBI chr16:69,105,653...69,118,719
Ensembl chr16:69,105,653...69,118,719
JBrowse link
G QSOX1 quiescin sulfhydryl oxidase 1 involved_in IMP (PMID:23867277) UniProt PMID:23867277 NCBI chr 1:180,154,869...180,204,030
Ensembl chr 1:180,154,869...180,204,030
JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5468210|PMID:22910579) Ensembl
MGI
PMID:22910579 GO_REF:0000107 MGI:5468210 NCBI chr16:68,358,327...68,448,703
Ensembl chr16:68,358,327...68,448,508
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in IDA
IEA
(PMID:19734317) BHF-UCL
Ensembl
PMID:19734317 GO_REF:0000107 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922
JBrowse link
basement membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMB1 laminin subunit beta 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:107,923,799...108,003,176
Ensembl chr 7:107,923,799...108,003,187
Ensembl chr 7:107,923,799...108,003,187
JBrowse link
G LAMB2 laminin subunit beta 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:49,121,114...49,133,066
Ensembl chr 3:49,121,114...49,133,118
JBrowse link
G LAMB3 laminin subunit beta 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:209,614,870...209,652,467
Ensembl chr 1:209,614,870...209,652,425
JBrowse link
G LAMB4 laminin subunit beta 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:108,011,662...108,130,361
Ensembl chr 7:108,023,548...108,130,361
JBrowse link
G NTN4 netrin 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:95,657,807...95,791,155
Ensembl chr12:95,657,807...95,791,152
Ensembl chr12:95,657,807...95,791,152
JBrowse link
G NTNG1 netrin G1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:107,140,017...107,484,923
Ensembl chr 1:107,140,007...107,483,458
Ensembl chr 1:107,140,007...107,483,458
JBrowse link
G NTNG2 netrin G2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:132,161,234...132,244,534
Ensembl chr 9:132,161,676...132,244,526
JBrowse link
G PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3618677|PMID:16467571) Ensembl
MGI
PMID:16467571 GO_REF:0000107 MGI:3618677 NCBI chr 7:101,205,984...101,217,581
Ensembl chr 7:101,205,977...101,218,420
JBrowse link
G PXDN peroxidasin involved_in ISS (PMID:22842973) FlyBase PMID:22842973 NCBI chr 2:1,631,887...1,744,852
Ensembl chr 2:1,631,887...1,744,852
JBrowse link
G RAMP2 receptor activity modifying protein 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr17:42,761,227...42,763,041
Ensembl chr17:42,758,447...42,763,041
JBrowse link
elastic fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3616522|PMID:16338116)
(MGI:54141|PMID:937819), (MGI:54357|PMID:20889), (MGI:63907|PMID:3385878)
UniProt
MGI
PMID:20889 PMID:937819 PMID:3385878 PMID:16338116 GO_REF:0000024 MGI:3616522 MGI:54141 MGI:54357 MGI:63907 NCBI chr  X:77,910,693...78,050,395
Ensembl chr  X:77,910,656...78,050,395
JBrowse link
G EFEMP2 EGF containing fibulin extracellular matrix protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
IMP
(MGI:4397710|PMID:19855011)
(PMID:18973305), (PMID:27339457)
InterPro
MGI
UniProt
PMID:18973305 PMID:19855011 PMID:27339457 GO_REF:0000002 GO_REF:0000024 MGI:4397710 NCBI chr11:65,866,441...65,872,800
Ensembl chr11:65,866,441...65,873,592
JBrowse link
G EMILIN1 elastin microfibril interfacer 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 2:27,078,615...27,086,403
Ensembl chr 2:27,078,615...27,086,403
JBrowse link
G FBLN5 fibulin 5 involved_in IMP
IBA
ISS
IEA
(PMID:17035250)
(PMID:21873635)
UniProt
GO_Central
BHF-UCL
InterPro
PMID:17035250 PMID:21873635 GO_REF:0000002 GO_REF:0000024 NCBI chr14:91,869,411...91,947,694
Ensembl chr14:91,869,412...91,947,987
Ensembl chr14:91,869,412...91,947,987
JBrowse link
G LOX lysyl oxidase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3604822|PMID:16192629), (MGI:3609311|PMID:12417550)
(MGI:5616293|PMID:23413430)
Ensembl
MGI
RGD
PMID:12417550 PMID:16192629 PMID:16432278 PMID:23413430 GO_REF:0000107 MGI:3604822 MGI:3609311 MGI:5616293 RGD:1600669 NCBI chr 5:122,063,195...122,078,259
Ensembl chr 5:122,063,195...122,078,360
Ensembl chr 5:122,063,195...122,078,360
JBrowse link
G LTBP3 latent transforming growth factor beta binding protein 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:65,538,559...65,558,389
Ensembl chr11:65,538,805...65,558,930
Ensembl chr11:65,538,805...65,558,930
JBrowse link
G LTBP4 latent transforming growth factor beta binding protein 4 involved_in ISS UniProt GO_REF:0000024 NCBI chr19:40,593,166...40,629,820
Ensembl chr19:40,592,883...40,629,818
JBrowse link
G MFAP4 microfibril associated protein 4 involved_in IDA
IBA
(PMID:22355679)
(PMID:21873635)
BHF-UCL
GO_Central
PMID:21873635 PMID:22355679 NCBI chr17:19,383,445...19,387,190
Ensembl chr17:19,383,442...19,387,240
Ensembl chr17:19,383,442...19,387,240
JBrowse link
G MYH11 myosin heavy chain 11 involved_in IMP (PMID:16444274) UniProt PMID:16444274 NCBI chr16:15,703,135...15,857,032
Ensembl chr16:15,703,135...15,857,028
JBrowse link
G THSD4 thrombospondin type 1 domain containing 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4453293|PMID:19940141) Ensembl
MGI
PMID:19940141 GO_REF:0000107 MGI:4453293 NCBI chr15:71,115,616...71,783,383
Ensembl chr15:71,096,952...71,783,383
JBrowse link
G TNXB tenascin XB involved_in IMP (PMID:15102077) UniProt PMID:15102077 NCBI chr 6:32,041,153...32,109,338
Ensembl chr 6:32,041,153...32,115,334
JBrowse link
negative regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANTXR1 ANTXR cell adhesion molecule 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5662198|PMID:25572963) Ensembl
MGI
PMID:25572963 GO_REF:0000107 MGI:5662198 NCBI chr 2:69,013,144...69,249,327
Ensembl chr 2:69,013,178...69,249,327
Ensembl chr 2:69,013,178...69,249,327
Ensembl chr 2:69,013,178...69,249,327
JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLASP1 cytoplasmic linker associated protein 1 involved_in IMP
IGI
(PMID:23940118) UniProt PMID:23940118 NCBI chr 2:121,337,776...121,649,462
Ensembl chr 2:121,337,776...121,649,476
Ensembl chr 2:121,337,776...121,649,476
JBrowse link
G CLASP2 cytoplasmic linker associated protein 2 involved_in IMP (PMID:23940118) UniProt PMID:23940118 NCBI chr 3:33,496,245...33,718,356
Ensembl chr 3:33,496,245...33,718,356
JBrowse link
G DAG1 dystroglycan 1 involved_in IMP (PMID:23940118) UniProt PMID:23940118 NCBI chr 3:49,468,703...49,535,618
Ensembl chr 3:49,468,703...49,535,618
JBrowse link
G PHLDB1 pleckstrin homology like domain family B member 1 involved_in IGI
IMP
(PMID:23940118) UniProt PMID:23940118 NCBI chr11:118,606,296...118,658,028
Ensembl chr11:118,606,440...118,658,031
JBrowse link
G PHLDB2 pleckstrin homology like domain family B member 2 involved_in IGI
IMP
(PMID:23940118) UniProt PMID:23940118 NCBI chr 3:111,732,496...111,976,517
Ensembl chr 3:111,732,497...111,976,517
JBrowse link
positive regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EMILIN1 elastin microfibril interfacer 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 2:27,078,615...27,086,403
Ensembl chr 2:27,078,615...27,086,403
JBrowse link
G RGCC regulator of cell cycle involved_in IDA (PMID:21307346) BHF-UCL PMID:21307346 NCBI chr13:41,457,411...41,470,876
Ensembl chr13:41,457,550...41,470,871
JBrowse link
G SMAD3 SMAD family member 3 involved_in IDA (PMID:21307346) BHF-UCL PMID:21307346 NCBI chr15:67,065,602...67,195,195
Ensembl chr15:67,063,763...67,195,169
Ensembl chr15:67,063,763...67,195,169
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4848001|PMID:20881014) Ensembl
MGI
PMID:20881014 GO_REF:0000107 MGI:4848001 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in IC (PMID:22269326) BHF-UCL PMID:22269326 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922
JBrowse link
regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGT angiotensinogen involved_in IGI (PMID:17416596) BHF-UCL PMID:17416596 NCBI chr 1:230,702,523...230,745,583
Ensembl chr 1:230,702,523...230,714,122
Ensembl chr 1:230,702,523...230,714,122
JBrowse link
G HAS2 hyaluronan synthase 2 involved_in IEA
ISO
Ensembl
RGD
PMID:27094859 GO_REF:0000107 RGD:12910548 NCBI chr 8:121,612,116...121,641,440
Ensembl chr 8:121,612,116...121,641,440
JBrowse link
G NOTCH1 notch receptor 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
G TIE1 tyrosine kinase with immunoglobulin like and EGF like domains 1 acts_upstream_of ISS BHF-UCL GO_REF:0000024 NCBI chr 1:43,300,954...43,323,108
Ensembl chr 1:43,300,982...43,323,108
JBrowse link
vitelline membrane formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3766861|PMID:17881493) Ensembl
MGI
PMID:17881493 GO_REF:0000107 MGI:3766861 NCBI chr 2:219,054,424...219,060,921
Ensembl chr 2:219,054,424...219,060,921
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18673
    cellular process 17726
      cellular component organization or biogenesis 7317
        cellular component organization 7101
          cellular component assembly 3356
            extracellular matrix assembly 45
              basement membrane assembly + 15
              biofilm matrix assembly 0
              elastic fiber assembly 11
              negative regulation of extracellular matrix assembly + 1
              positive regulation of extracellular matrix assembly + 10
              regulation of extracellular matrix assembly + 15
              vitelline membrane formation + 1
Path 2
Term Annotations click to browse term
  biological_process 18673
    cellular process 17726
      cellular component organization or biogenesis 7317
        cellular component organization 7101
          extracellular structure organization 445
            extracellular matrix organization 444
              extracellular matrix assembly 45
                basement membrane assembly + 15
                biofilm matrix assembly 0
                elastic fiber assembly 11
                negative regulation of extracellular matrix assembly + 1
                positive regulation of extracellular matrix assembly + 10
                regulation of extracellular matrix assembly + 15
                vitelline membrane formation + 1
paths to the root