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ONTOLOGY REPORT - ANNOTATIONS

Term:extracellular matrix assembly
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Accession:GO:0085029 term browser browse the term
Definition:The aggregation, arrangement and bonding together of the extracellular matrix.


show annotations for term's descendants           Sort by:
extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL1A2 collagen type I alpha 2 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22910579) Ensembl
MGI		 PMID:22910579 GO_REF:0000107 NCBI chr 7:94,394,895...94,431,227
Ensembl chr 7:94,394,895...94,431,227 		JBrowse link
G COL6A1 collagen type VI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19114551) Ensembl
MGI		 PMID:19114551 GO_REF:0000107 NCBI chr21:45,981,770...46,005,048
Ensembl chr21:45,981,770...46,005,050 		JBrowse link
G ELN elastin involved_in ISS
IEA		 BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:74,028,173...74,069,907
Ensembl chr 7:74,027,789...74,069,907 		JBrowse link
G FKBP10 FKBP prolyl isomerase 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28774593) Ensembl
MGI		 PMID:28774593 GO_REF:0000107 NCBI chr17:41,813,004...41,823,213
Ensembl chr17:41,812,680...41,823,213 		JBrowse link
G GAS6 growth arrest specific 6 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr13:113,820,549...113,864,076
Ensembl chr13:113,820,549...113,864,076 		JBrowse link
G GPM6B glycoprotein M6B involved_in IMP (PMID:21638316) UniProt PMID:21638316 NCBI chr  X:13,770,939...13,938,638
Ensembl chr  X:13,770,939...13,938,638 		JBrowse link
G HAPLN2 hyaluronan and proteoglycan link protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20181608) Ensembl
MGI		 PMID:20181608 GO_REF:0000107 NCBI chr 1:156,601,504...156,625,725
Ensembl chr 1:156,619,331...156,625,725 		JBrowse link
G HAS1 hyaluronan synthase 1 involved_in IEA
IBA
ISS		 Ensembl
GO_Central
TreeGrafter
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr19:51,713,112...51,723,991
Ensembl chr19:51,713,112...51,723,991 		JBrowse link
G HAS2 hyaluronan synthase 2 involved_in IEA
IBA
ISS		 Ensembl
GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:121,612,116...121,641,440
Ensembl chr 8:121,612,116...121,641,440 		JBrowse link
G HAS3 hyaluronan synthase 3 involved_in ISS
IBA
IEA		 UniProt
GO_Central
TreeGrafter
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr16:69,083,484...69,118,719
Ensembl chr16:69,105,653...69,118,719 		JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:42,456,757...42,589,746
Ensembl chr12:42,456,757...42,590,355 		JBrowse link
G QSOX1 quiescin sulfhydryl oxidase 1 involved_in IMP (PMID:23867277) UniProt PMID:23867277 NCBI chr 1:180,154,869...180,204,030
Ensembl chr 1:180,154,869...180,204,030 		JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22910579) Ensembl
MGI		 PMID:22910579 GO_REF:0000107 NCBI chr16:68,358,327...68,448,508
Ensembl chr16:68,358,327...68,448,508 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:20881014) Ensembl
MGI		 PMID:20881014 GO_REF:0000107 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416 		JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in IEA
IDA		 (PMID:19734317) Ensembl
BHF-UCL		 PMID:19734317 GO_REF:0000107 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922 		JBrowse link
basement membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMB1 laminin subunit beta 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:107,923,799...108,003,161
Ensembl chr 7:107,923,799...108,003,213 		JBrowse link
G LAMB3 laminin subunit beta 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:209,614,870...209,652,425
Ensembl chr 1:209,614,870...209,652,425 		JBrowse link
G LAMB4 laminin subunit beta 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:108,011,662...108,130,361
Ensembl chr 7:108,023,548...108,130,361 		JBrowse link
G NTN4 netrin 4 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr12:95,657,807...95,791,155
Ensembl chr12:95,657,807...95,791,189 		JBrowse link
G PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16467571) Ensembl
MGI		 PMID:16467571 GO_REF:0000107 NCBI chr 7:101,205,984...101,217,581
Ensembl chr 7:101,205,977...101,218,420 		JBrowse link
G PXDN peroxidasin involved_in
acts_upstream_of		 ISS
IEA
IMP		 (PMID:22842973)
(PMID:32543734)
(PMID:25708780), (PMID:27697841), (PMID:32571911)		 FlyBase
Ensembl
UniProt		 PMID:22842973 PMID:25708780 PMID:27697841 PMID:32543734 PMID:32571911 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:1,631,887...1,744,901
Ensembl chr 2:1,631,887...1,744,852 		JBrowse link
G RAMP2 receptor activity modifying protein 2 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr17:42,761,227...42,763,041
Ensembl chr17:42,758,447...42,763,041 		JBrowse link
elastic fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha involved_in
acts_upstream_of_or_within		 ISS
ISO		 (PMID:16338116)
(PMID:20889), (PMID:3385878), (PMID:937819)		 UniProt
MGI		 PMID:20889 PMID:937819 PMID:3385878 PMID:16338116 GO_REF:0000024 NCBI chr  X:77,910,693...78,050,395
Ensembl chr  X:77,910,690...78,050,395 		JBrowse link
G COL3A1 collagen type III alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:188,974,373...189,012,746
Ensembl chr 2:188,974,373...189,012,746 		JBrowse link
G EFEMP2 EGF containing fibulin extracellular matrix protein 2 involved_in
acts_upstream_of_or_within		 IMP
ISO
ISS		 (PMID:18973305), (PMID:27339457)
(PMID:19855011)		 UniProt
MGI		 PMID:18973305 PMID:19855011 PMID:27339457 GO_REF:0000024 NCBI chr11:65,866,441...65,872,800
Ensembl chr11:65,866,441...65,873,592 		JBrowse link
G EMILIN1 elastin microfibril interfacer 1 involved_in ISS
IEA		 BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:27,078,615...27,086,403
Ensembl chr 2:27,078,615...27,086,403 		JBrowse link
G FBLN5 fibulin 5 involved_in IMP
IBA
IEA
ISS		 (PMID:17035250) UniProt
GO_Central
TreeGrafter
BHF-UCL		 PMID:17035250 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr14:91,869,411...91,947,694
Ensembl chr14:91,869,411...91,947,987 		JBrowse link
G LOX lysyl oxidase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12417550), (PMID:16192629)
(PMID:23413430)		 RGD
MGI
Ensembl		 PMID:12417550 PMID:16192629 PMID:16432278 PMID:23413430 GO_REF:0000107 RGD:1600669 NCBI chr 5:122,063,195...122,078,259
Ensembl chr 5:122,063,195...122,078,413 		JBrowse link
G LTBP4 latent transforming growth factor beta binding protein 4 involved_in ISS UniProt GO_REF:0000024 NCBI chr19:40,593,166...40,629,820
Ensembl chr19:40,592,883...40,629,818 		JBrowse link
G MFAP4 microfibril associated protein 4 involved_in IDA
IBA		 (PMID:22355679) BHF-UCL
GO_Central		 PMID:22355679 GO_REF:0000033 NCBI chr17:19,383,445...19,387,190
Ensembl chr17:19,383,442...19,387,190 		JBrowse link
G MYH11 myosin heavy chain 11 involved_in IMP (PMID:16444274) UniProt PMID:16444274 NCBI chr16:15,703,135...15,857,028
Ensembl chr16:15,703,135...15,857,028 		JBrowse link
G THSD4 thrombospondin type 1 domain containing 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19940141) Ensembl
MGI		 PMID:19940141 GO_REF:0000107 NCBI chr15:71,096,894...71,783,383
Ensembl chr15:71,096,952...71,783,383 		JBrowse link
G TNXB tenascin XB involved_in IMP (PMID:15102077) UniProt PMID:15102077 NCBI chr 6:32,041,153...32,109,338
Ensembl chr 6:32,041,153...32,115,334 		JBrowse link
negative regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANTXR1 ANTXR cell adhesion molecule 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25572963) Ensembl
MGI		 PMID:25572963 GO_REF:0000107 NCBI chr 2:69,013,144...69,249,327
Ensembl chr 2:69,013,176...69,249,327 		JBrowse link
G MIR145 microRNA 145 acts_upstream_of
involved_in		 IGI
IMP		 (PMID:25323858)
(PMID:25704091)		 BHF-UCL PMID:25323858 PMID:25704091 NCBI chr 5:149,430,646...149,430,733
Ensembl chr 5:149,430,646...149,430,733 		JBrowse link
G MIR18A microRNA 18a involved_in IMP (PMID:28131417) BHF-UCL PMID:28131417 NCBI chr13:91,350,751...91,350,821
Ensembl chr13:91,350,751...91,350,821 		JBrowse link
G MIR19A microRNA 19a acts_upstream_of IDA (PMID:27098600) BHF-UCL PMID:27098600 NCBI chr13:91,350,891...91,350,972
Ensembl chr13:91,350,891...91,350,972 		JBrowse link
G MIR19B1 microRNA 19b-1 acts_upstream_of IDA (PMID:27098600) BHF-UCL PMID:27098600 NCBI chr13:91,351,192...91,351,278
Ensembl chr13:91,351,192...91,351,278 		JBrowse link
G MIR19B2 microRNA 19b-2 acts_upstream_of IDA (PMID:27098600) BHF-UCL PMID:27098600 NCBI chr  X:134,169,671...134,169,766
Ensembl chr  X:134,169,671...134,169,766 		JBrowse link
G MIR27B microRNA 27b acts_upstream_of IDA (PMID:28095798) BHF-UCL PMID:28095798 NCBI chr 9:95,085,445...95,085,541
Ensembl chr 9:95,085,445...95,085,541 		JBrowse link
G MIR29B1 microRNA 29b-1 involved_in NAS (PMID:22269326) BHF-UCL PMID:22269326 NCBI chr 7:130,877,459...130,877,539
Ensembl chr 7:130,877,459...130,877,539 		JBrowse link
G MIR29B2 microRNA 29b-2 involved_in NAS (PMID:22269326) BHF-UCL PMID:22269326 NCBI chr 1:207,802,443...207,802,523
Ensembl chr 1:207,802,443...207,802,523 		JBrowse link
G MIR483 microRNA 483 acts_upstream_of IDA (PMID:26747772) BHF-UCL PMID:26747772 NCBI chr11:2,134,134...2,134,209
Ensembl chr11:2,134,134...2,134,209 		JBrowse link
G MIR9-1 microRNA 9-1 acts_upstream_of IMP (PMID:26315535) BHF-UCL PMID:26315535 NCBI chr 1:156,420,341...156,420,429
Ensembl chr 1:156,420,341...156,420,429 		JBrowse link
G MIR9-2 microRNA 9-2 acts_upstream_of IMP (PMID:26315535) BHF-UCL PMID:26315535 NCBI chr 5:88,666,853...88,666,939
Ensembl chr 5:88,666,853...88,666,939 		JBrowse link
G MIR9-3 microRNA 9-3 acts_upstream_of IMP (PMID:26315535) BHF-UCL PMID:26315535 NCBI chr15:89,368,017...89,368,106
Ensembl chr15:89,368,017...89,368,106 		JBrowse link
G MIR98 microRNA 98 acts_upstream_of IMP (PMID:28251559) BHF-UCL PMID:28251559 NCBI chr  X:53,556,223...53,556,341
Ensembl chr  X:53,556,223...53,556,341 		JBrowse link
G PPARG peroxisome proliferator activated receptor gamma involved_in IDA (PMID:25704091) BHF-UCL PMID:25704091 NCBI chr 3:12,287,368...12,434,344
Ensembl chr 3:12,287,368...12,434,356 		JBrowse link
G TGFBR3 transforming growth factor beta receptor 3 involved_in IMP (PMID:30729664) BHF-UCL PMID:30729664 NCBI chr 1:91,680,343...91,906,002
Ensembl chr 1:91,680,343...91,906,335 		JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLASP1 cytoplasmic linker associated protein 1 involved_in IGI
IMP		 (PMID:23940118) UniProt PMID:23940118 NCBI chr 2:121,337,776...121,649,462
Ensembl chr 2:121,337,776...121,649,476 		JBrowse link
G CLASP2 cytoplasmic linker associated protein 2 involved_in IMP (PMID:23940118) UniProt PMID:23940118 NCBI chr 3:33,496,245...33,718,254
Ensembl chr 3:33,496,245...33,718,356 		JBrowse link
G DAG1 dystroglycan 1 involved_in IMP (PMID:23940118) UniProt PMID:23940118 NCBI chr 3:49,468,948...49,535,615
Ensembl chr 3:49,468,713...49,535,618 		JBrowse link
G PHLDB1 pleckstrin homology like domain family B member 1 involved_in IGI
IMP		 (PMID:23940118) UniProt PMID:23940118 NCBI chr11:118,606,436...118,658,028
Ensembl chr11:118,606,440...118,658,031 		JBrowse link
G PHLDB2 pleckstrin homology like domain family B member 2 involved_in IMP
IGI		 (PMID:23940118) UniProt PMID:23940118 NCBI chr 3:111,732,496...111,976,517
Ensembl chr 3:111,732,497...111,976,517 		JBrowse link
positive regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGT angiotensinogen acts_upstream_of IDA (PMID:30729664) BHF-UCL PMID:30729664 NCBI chr 1:230,702,523...230,745,583
Ensembl chr 1:230,690,776...230,745,576 		JBrowse link
G EMILIN1 elastin microfibril interfacer 1 involved_in IEA
ISS		 Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:27,078,615...27,086,403
Ensembl chr 2:27,078,615...27,086,403 		JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 involved_in ISO
IEA		 RGD
Ensembl		 PMID:27488450 GO_REF:0000107 RGD:152995505 NCBI chr 1:11,674,480...11,691,830
Ensembl chr 1:11,658,918...11,691,811 		JBrowse link
G MIR27B microRNA 27b acts_upstream_of IDA (PMID:30729664) BHF-UCL PMID:30729664 NCBI chr 9:95,085,445...95,085,541
Ensembl chr 9:95,085,445...95,085,541 		JBrowse link
G RGCC regulator of cell cycle involved_in IDA (PMID:21307346) BHF-UCL PMID:21307346 NCBI chr13:41,457,550...41,470,871
Ensembl chr13:41,457,550...41,470,871 		JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of		 IDA
IMP		 (PMID:21307346)
(PMID:30729664)		 BHF-UCL PMID:21307346 PMID:30729664 NCBI chr15:67,065,602...67,195,169
Ensembl chr15:67,063,763...67,195,173 		JBrowse link
G SMAD4 SMAD family member 4 involved_in IMP (PMID:26747772) BHF-UCL PMID:26747772 NCBI chr18:51,030,213...51,085,042
Ensembl chr18:51,028,528...51,085,045 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20881014) Ensembl
MGI		 PMID:20881014 GO_REF:0000107 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416 		JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in
acts_upstream_of		 TAS
NAS
ISS
IEA		 (PMID:22269326)
(PMID:27098600), (PMID:28095798)
(PMID:24279830)		 BHF-UCL
Ensembl		 PMID:22269326 PMID:24279830 PMID:27098600 PMID:28095798 GO_REF:0000107 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922 		JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 acts_upstream_of IMP (PMID:28251559) BHF-UCL PMID:28251559 NCBI chr 9:99,103,647...99,154,192
Ensembl chr 9:99,104,038...99,154,192 		JBrowse link
regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGT angiotensinogen involved_in IGI (PMID:17416596) BHF-UCL PMID:17416596 NCBI chr 1:230,702,523...230,745,583
Ensembl chr 1:230,690,776...230,745,576 		JBrowse link
G HAS2 hyaluronan synthase 2 involved_in ISO
IEA		 RGD
Ensembl		 PMID:27094859 GO_REF:0000107 RGD:12910548 NCBI chr 8:121,612,116...121,641,440
Ensembl chr 8:121,612,116...121,641,440 		JBrowse link
G NOTCH1 notch receptor 1 involved_in ISS
IEA		 BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048 		JBrowse link
G TIE1 tyrosine kinase with immunoglobulin like and EGF like domains 1 involved_in
acts_upstream_of		 IEA
ISS		 Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:43,300,982...43,323,108
Ensembl chr 1:43,300,982...43,323,108 		JBrowse link
vitelline membrane formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17881493) Ensembl
MGI		 PMID:17881493 GO_REF:0000107 NCBI chr 2:219,054,424...219,060,921
Ensembl chr 2:219,054,424...219,060,921 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19669
    cellular process 18300
      cellular component organization or biogenesis 7533
        cellular component organization 7308
          cellular component assembly 3535
            extracellular matrix assembly 63
              basement membrane assembly + 12
              biofilm matrix assembly 0
              elastic fiber assembly 11
              negative regulation of extracellular matrix assembly + 16
              positive regulation of extracellular matrix assembly + 15
              regulation of extracellular matrix assembly + 33
              vitelline membrane formation + 1
Path 2
Term Annotations click to browse term
  biological_process 19669
    cellular process 18300
      cellular component organization or biogenesis 7533
        cellular component organization 7308
          extracellular structure organization 379
            extracellular matrix organization 378
              extracellular matrix assembly 63
                basement membrane assembly + 12
                biofilm matrix assembly 0
                elastic fiber assembly 11
                negative regulation of extracellular matrix assembly + 16
                positive regulation of extracellular matrix assembly + 15
                regulation of extracellular matrix assembly + 33
                vitelline membrane formation + 1
paths to the root