Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:extracellular matrix assembly
go back to main search page
Accession:GO:0085029 term browser browse the term
Definition:The aggregation, arrangement and bonding together of the extracellular matrix.


show annotations for term's descendants           Sort by:
 
extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B9D2 B9 domain containing 2 involved_in ISS AgBase GO_REF:0000024 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G COL1A2 collagen type I alpha 2 chain involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5468210|PMID:22910579) Ensembl
MGI
PMID:22910579 GO_REF:0000107 MGI:5468210 NCBI chr14:19,883,731...19,919,527
Ensembl chr14:19,883,868...19,919,527
JBrowse link
G FKBP10 FKBP prolyl isomerase 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6094666|PMID:28774593) Ensembl
MGI
PMID:28774593 GO_REF:0000107 MGI:6094666 NCBI chr 9:21,001,227...21,009,995
Ensembl chr 9:21,001,577...21,009,927
JBrowse link
G GAS6 growth arrest specific 6 involved_in ISO PMID:18374201 UniProt PMID:18374201 RGD:8554638 NCBI chr22:60,975,196...61,005,869
Ensembl chr22:60,974,849...61,005,875
JBrowse link
G GPM6B glycoprotein M6B involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:10,214,889...10,375,151
Ensembl chr  X:10,214,933...10,374,837
JBrowse link
G HAPLN2 hyaluronan and proteoglycan link protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4437139|PMID:20181608) Ensembl
MGI
PMID:20181608 GO_REF:0000107 MGI:4437139 NCBI chr 7:41,340,493...41,346,607
Ensembl chr 7:41,341,883...41,344,117
JBrowse link
G HAS1 hyaluronan synthase 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:105,376,091...105,386,043
Ensembl chr 1:105,376,536...105,385,134
JBrowse link
G HAS2 hyaluronan synthase 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:20,310,946...20,342,647
Ensembl chr13:20,309,872...20,341,636
JBrowse link
G HAS3 hyaluronan synthase 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:80,520,261...80,530,769
Ensembl chr 5:80,520,261...80,529,434
JBrowse link
G QSOX1 quiescin sulfhydryl oxidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:13,718,799...13,754,115
Ensembl chr 7:13,718,799...13,754,114
JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5468210|PMID:22910579) Ensembl
MGI
PMID:22910579 GO_REF:0000107 MGI:5468210 NCBI chr 5:81,089,657...81,172,173
Ensembl chr 5:81,142,888...81,172,189
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in ISS AgBase GO_REF:0000024 NCBI chr 1:112,629,476...112,643,885
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
basement membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMB1 laminin subunit beta 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308
JBrowse link
G LAMB2 laminin subunit beta 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:40,036,967...40,062,628
Ensembl chr20:40,050,157...40,062,523
JBrowse link
G LAMB3 laminin subunit beta 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:8,272,326...8,313,322
Ensembl chr 7:8,272,736...8,310,474
JBrowse link
G LAMB4 laminin subunit beta 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:12,517,124...12,609,253
Ensembl chr18:12,509,774...12,608,862
JBrowse link
G NTN4 netrin 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:35,527,491...35,650,170
Ensembl chr15:35,528,133...35,649,566
JBrowse link
G NTNG1 netrin G1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:44,091,368...44,407,118
Ensembl chr 6:44,092,043...44,403,799
JBrowse link
G NTNG2 netrin G2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 9:51,992,599...52,059,902 JBrowse link
G PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3618677|PMID:16467571) Ensembl
MGI
PMID:16467571 GO_REF:0000107 MGI:3618677 NCBI chr 6:8,664,135...8,671,637
Ensembl chr 6:8,664,358...8,671,620
JBrowse link
G RAMP2 receptor activity modifying protein 2 involved_in ISO (MGI:3772552|PMID:18097473) UniProt PMID:18097473 MGI:3772552 NCBI chr 9:20,250,711...20,252,485 JBrowse link
G VPS25 vacuolar protein sorting 25 homolog involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:20,242,230...20,247,396 JBrowse link
elastic fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha acts_upstream_of_or_within ISO (MGI:54141|PMID:937819), (MGI:54357|PMID:20889), (MGI:63907|PMID:3385878)
(MGI:3616522|PMID:16338116)
MGI PMID:20889 PMID:937819 PMID:3385878 PMID:16338116 MGI:3616522 MGI:54141 MGI:54357 MGI:63907 NCBI chr  X:60,203,336...60,356,525
Ensembl chr  X:60,203,270...60,352,869
JBrowse link
G EFEMP2 EGF containing fibulin extracellular matrix protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4397710|PMID:19855011) Ensembl
MGI
PMID:19855011 GO_REF:0000107 MGI:4397710 NCBI chr18:51,389,797...51,396,109
Ensembl chr18:51,389,824...51,396,107
JBrowse link
G EMILIN1 elastin microfibril interfacer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:21,071,502...21,078,888
Ensembl chr17:21,071,580...21,078,889
JBrowse link
G FBLN5 fibulin 5 involved_in IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 8:1,162,203...1,231,809
Ensembl chr 8:1,162,923...1,231,719
JBrowse link
G LOX lysyl oxidase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5616293|PMID:23413430)
(MGI:3604822|PMID:16192629), (MGI:3609311|PMID:12417550)
Ensembl
MGI
RGD
PMID:12417550 PMID:16192629 PMID:16432278 PMID:23413430 GO_REF:0000107 MGI:3604822 MGI:3609311 MGI:5616293 RGD:1600669 NCBI chr11:12,023,645...12,040,015
Ensembl chr11:12,027,250...12,039,819
JBrowse link
G LTBP3 latent transforming growth factor beta binding protein 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:51,653,783...51,667,793
Ensembl chr18:51,659,098...51,667,433
JBrowse link
G LTBP4 latent transforming growth factor beta binding protein 4 involved_in ISO (MGI:5638486|PMID:25713297) UniProt PMID:25713297 MGI:5638486 NCBI chr 1:113,124,109...113,152,283
Ensembl chr 1:113,124,109...113,150,442
JBrowse link
G MFAP4 microfibril associated protein 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:40,828,548...40,831,757
Ensembl chr 5:40,828,282...40,831,495
JBrowse link
G MYH11 myosin heavy chain 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:28,041,330...28,157,277
Ensembl chr 6:28,041,318...28,262,184
JBrowse link
G THSD4 thrombospondin type 1 domain containing 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4453293|PMID:19940141) Ensembl
MGI
PMID:19940141 GO_REF:0000107 MGI:4453293 NCBI chr30:35,156,926...35,358,673
Ensembl chr30:35,156,981...35,353,767
JBrowse link
G TNXB tenascin XB involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:1,453,227...1,510,171
Ensembl chr12:1,453,260...1,509,749
JBrowse link
negative regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANTXR1 ANTXR cell adhesion molecule 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5662198|PMID:25572963) Ensembl
MGI
PMID:25572963 GO_REF:0000107 MGI:5662198 NCBI chr10:67,829,573...68,021,368
Ensembl chr10:67,829,225...68,019,127
JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLASP1 cytoplasmic linker associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:28,563,189...28,830,503
Ensembl chr19:28,595,040...28,827,645
JBrowse link
G CLASP2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chr23:3,261,778...3,423,698
Ensembl chr23:3,246,522...3,421,716
JBrowse link
G DAG1 dystroglycan 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:39,707,672...39,779,094
Ensembl chr20:39,708,053...39,778,550
JBrowse link
G PHLDB1 pleckstrin homology like domain family B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:15,090,823...15,138,397
Ensembl chr 5:15,090,813...15,134,784
JBrowse link
G PHLDB2 pleckstrin homology like domain family B member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr33:16,521,087...16,615,774
Ensembl chr33:16,497,202...16,614,132
JBrowse link
positive regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EMILIN1 elastin microfibril interfacer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:21,071,502...21,078,888
Ensembl chr17:21,071,580...21,078,889
JBrowse link
G RGCC regulator of cell cycle involved_in ISO (PMID:21307346) BHF-UCL PMID:21307346 NCBI chr22:9,199,204...9,209,297 JBrowse link
G SMAD3 SMAD family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:31,246,313...31,360,098
Ensembl chr30:31,245,657...31,363,337
JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (MGI:4848001|PMID:20881014) MGI PMID:20881014 MGI:4848001 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
JBrowse link
regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGT angiotensinogen involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:8,681,192...8,694,059
Ensembl chr 4:8,683,798...8,693,880
JBrowse link
G HAS2 hyaluronan synthase 2 ISO RGD PMID:27094859 RGD:12910548 NCBI chr13:20,310,946...20,342,647
Ensembl chr13:20,309,872...20,341,636
JBrowse link
G NOTCH1 notch receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277
JBrowse link
G TIE1 tyrosine kinase with immunoglobulin like and EGF like domains 1 involved_in
acts_upstream_of
IEA
ISO
(MGI:6370101|PMID:31319059) Ensembl
BHF-UCL
PMID:31319059 GO_REF:0000107 MGI:6370101 NCBI chr15:16,838,267...16,857,004
Ensembl chr15:16,838,582...16,856,946
JBrowse link
vitelline membrane formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:3766861|PMID:17881493) MGI PMID:17881493 MGI:3766861 NCBI chr37:25,616,942...25,622,989 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16218
    cellular process 15535
      cellular component organization or biogenesis 6170
        cellular component organization 6001
          cellular component assembly 2803
            extracellular matrix assembly 46
              basement membrane assembly + 15
              biofilm matrix assembly 0
              elastic fiber assembly 11
              negative regulation of extracellular matrix assembly + 1
              positive regulation of extracellular matrix assembly + 9
              regulation of extracellular matrix assembly + 14
              vitelline membrane formation + 1
Path 2
Term Annotations click to browse term
  biological_process 16218
    cellular process 15535
      cellular component organization or biogenesis 6170
        cellular component organization 6001
          extracellular structure organization 311
            extracellular matrix organization 309
              extracellular matrix assembly 46
                basement membrane assembly + 15
                biofilm matrix assembly 0
                elastic fiber assembly 11
                negative regulation of extracellular matrix assembly + 1
                positive regulation of extracellular matrix assembly + 9
                regulation of extracellular matrix assembly + 14
                vitelline membrane formation + 1
paths to the root