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ONTOLOGY REPORT - ANNOTATIONS


Term:extracellular matrix assembly
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Accession:GO:0085029 term browser browse the term
Definition:The aggregation, arrangement and bonding together of the extracellular matrix.


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extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a2 collagen type I alpha 2 chain acts_upstream_of_or_within ISO (MGI:5468210|PMID:22910579) MGI PMID:22910579 MGI:5468210 NCBI chrNW_004955432:11,127,961...11,164,145
Ensembl chrNW_004955432:11,128,112...11,163,302
JBrowse link
G Fkbp10 FKBP prolyl isomerase 10 acts_upstream_of_or_within ISO (MGI:6094666|PMID:28774593) MGI PMID:28774593 MGI:6094666 NCBI chrNW_004955451:16,025,008...16,031,950
Ensembl chrNW_004955451:16,025,008...16,035,976
JBrowse link
G Gas6 growth arrest specific 6 involved_in ISO PMID:18374201 UniProt PMID:18374201 RGD:8554638 NCBI chrNW_004955404:276,397...303,864
Ensembl chrNW_004955404:275,946...304,809
JBrowse link
G Gpm6b glycoprotein M6B involved_in ISO (PMID:21638316) UniProt PMID:21638316 NCBI chrNW_004955519:4,287,203...4,432,188
Ensembl chrNW_004955519:4,287,026...4,432,188
JBrowse link
G Hapln2 hyaluronan and proteoglycan link protein 2 acts_upstream_of_or_within ISO (MGI:4437139|PMID:20181608) MGI PMID:20181608 MGI:4437139 NCBI chrNW_004955545:2,705,903...2,710,763
Ensembl chrNW_004955545:2,709,013...2,710,588
JBrowse link
G Has1 hyaluronan synthase 1 involved_in ISO (MGI:5508296|PMID:10455188) UniProt PMID:10455188 MGI:5508296 NCBI chrNW_004955558:826,853...836,809
Ensembl chrNW_004955558:826,853...836,809
JBrowse link
G Has2 hyaluronan synthase 2 involved_in ISO (MGI:5508296|PMID:10455188) UniProt PMID:10455188 MGI:5508296 NCBI chrNW_004955540:593,316...609,760
Ensembl chrNW_004955540:593,316...609,865
JBrowse link
G Has3 hyaluronan synthase 3 involved_in ISO (MGI:5508296|PMID:10455188) UniProt PMID:10455188 MGI:5508296 NCBI chrNW_004955484:7,542,286...7,570,108
Ensembl chrNW_004955484:7,542,286...7,570,684
JBrowse link
G Qsox1 quiescin sulfhydryl oxidase 1 involved_in ISO (PMID:23867277) UniProt PMID:23867277 NCBI chrNW_004955406:19,363,938...19,402,134 JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO (MGI:5468210|PMID:22910579) MGI PMID:22910579 MGI:5468210 NCBI chrNW_004955484:8,207,686...8,298,164
Ensembl chrNW_004955484:8,272,572...8,298,144
JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO (PMID:19734317)
(MGI:4820704|PMID:19734317)
BHF-UCL PMID:19734317 MGI:4820704 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441
JBrowse link
basement membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 acts_upstream_of_or_within ISO (MGI:3618677|PMID:16467571) MGI PMID:16467571 MGI:3618677 NCBI chrNW_004955456:16,082,424...16,090,773
Ensembl chrNW_004955456:16,082,437...16,093,389
JBrowse link
G Ramp2 receptor activity modifying protein 2 involved_in ISO (MGI:3772552|PMID:18097473) UniProt PMID:18097473 MGI:3772552 NCBI chrNW_004955451:16,584,742...16,586,093 JBrowse link
elastic fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (MGI:54141|PMID:937819), (MGI:54357|PMID:20889), (MGI:63907|PMID:3385878)
(MGI:3616522|PMID:16338116)
MGI PMID:20889 PMID:937819 PMID:3385878 PMID:16338116 MGI:3616522 MGI:54141 MGI:54357 MGI:63907 NCBI chrNW_004955557:1,355,471...1,515,725
Ensembl chrNW_004955557:1,355,397...1,515,393
JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 involved_in
acts_upstream_of_or_within
ISO (PMID:18973305), (PMID:27339457)
(MGI:3619755|PMID:16478991), (MGI:4947512|PMID:20019329), (MGI:5660411|PMID:26178373), (MGI:6140729|PMID:28508064), (MGI:6158865|PMID:26711913)
(MGI:4397710|PMID:19855011)
UniProt
MGI
PMID:16478991 PMID:18973305 PMID:19855011 PMID:20019329 PMID:26178373 PMID:26711913 PMID:27339457 PMID:28508064 MGI:3619755 MGI:4397710 MGI:4947512 MGI:5660411 MGI:6140729 MGI:6158865 NCBI chrNW_004955422:19,463,090...19,470,605
Ensembl chrNW_004955422:19,463,987...19,470,605
JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in ISO (MGI:5605894|PMID:25056700) BHF-UCL PMID:25056700 MGI:5605894 NCBI chrNW_004955469:9,049,666...9,057,692
Ensembl chrNW_004955469:9,049,662...9,057,684
JBrowse link
G Fbln5 fibulin 5 involved_in ISO (PMID:17035250)
(MGI:2681470|PMID:11805835), (MGI:2681471|PMID:11805834)
UniProt
BHF-UCL
PMID:11805834 PMID:11805835 PMID:17035250 MGI:2681470 MGI:2681471 NCBI chrNW_004955438:14,073,927...14,144,644
Ensembl chrNW_004955438:14,071,410...14,145,070
JBrowse link
G Lox lysyl oxidase acts_upstream_of_or_within ISO (MGI:5616293|PMID:23413430)
(MGI:3604822|PMID:16192629), (MGI:3609311|PMID:12417550)
RGD
MGI
PMID:12417550 PMID:16192629 PMID:16432278 PMID:23413430 MGI:3604822 MGI:3609311 MGI:5616293 RGD:1600669 NCBI chrNW_004955521:178,290...193,926
Ensembl chrNW_004955521:185,792...193,926
JBrowse link
G Ltbp4 latent transforming growth factor beta binding protein 4 involved_in ISO (MGI:5638486|PMID:25713297) UniProt PMID:25713297 MGI:5638486 NCBI chrNW_004955578:685,960...712,809
Ensembl chrNW_004955578:686,211...712,794
JBrowse link
G Mfap4 microfibril associated protein 4 involved_in ISO (PMID:22355679) BHF-UCL PMID:22355679 NCBI chrNW_004955467:378,389...381,593
Ensembl chrNW_004955467:377,887...381,593
JBrowse link
G Myh11 myosin heavy chain 11 involved_in ISO (PMID:16444274) UniProt PMID:16444274 NCBI chrNW_004955442:528,317...644,252
Ensembl chrNW_004955442:528,880...644,264
JBrowse link
G Thsd4 thrombospondin type 1 domain containing 4 acts_upstream_of_or_within ISO (MGI:4453293|PMID:19940141) MGI PMID:19940141 MGI:4453293 NCBI chrNW_004955450:5,296,670...5,827,252
Ensembl chrNW_004955450:5,301,765...5,479,638
JBrowse link
G Tnxb tenascin XB involved_in ISO (PMID:15102077) UniProt PMID:15102077 NCBI chrNW_004955437:516,713...561,188
Ensembl chrNW_004955437:511,963...553,856
JBrowse link
negative regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Antxr1 ANTXR cell adhesion molecule 1 acts_upstream_of_or_within ISO (MGI:5662198|PMID:25572963) MGI PMID:25572963 MGI:5662198 NCBI chrNW_004955424:15,820,734...16,034,278
Ensembl chrNW_004955424:15,824,435...16,033,946
JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 cytoplasmic linker associated protein 1 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004955459:8,382,671...8,628,048
Ensembl chrNW_004955459:8,408,160...8,629,344
JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004955421:767,648...957,160
Ensembl chrNW_004955421:767,210...897,457
JBrowse link
G Dag1 dystroglycan 1 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004955532:1,446,553...1,465,310
Ensembl chrNW_004955532:1,397,900...1,466,312
JBrowse link
G Phldb1 pleckstrin homology like domain family B member 1 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004955412:19,754,997...19,800,984
Ensembl chrNW_004955412:19,756,379...19,800,984
JBrowse link
G Phldb2 pleckstrin homology like domain family B member 2 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004955427:12,284,100...12,385,755
Ensembl chrNW_004955427:12,273,062...12,388,217
JBrowse link
positive regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emilin1 elastin microfibril interfacer 1 involved_in ISO (MGI:5605894|PMID:25056700) BHF-UCL PMID:25056700 MGI:5605894 NCBI chrNW_004955469:9,049,666...9,057,692
Ensembl chrNW_004955469:9,049,662...9,057,684
JBrowse link
G Rgcc regulator of cell cycle involved_in ISO (PMID:21307346) BHF-UCL PMID:21307346 NCBI chrNW_004955518:4,788,857...4,800,273
Ensembl chrNW_004955518:4,788,656...4,801,204
JBrowse link
G Smad3 SMAD family member 3 involved_in ISO (PMID:21307346) BHF-UCL PMID:21307346 NCBI chrNW_004955450:8,747,651...8,842,003
Ensembl chrNW_004955450:8,747,651...8,842,136
JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (MGI:4848001|PMID:20881014) MGI PMID:20881014 MGI:4848001 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563
JBrowse link
regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in ISO (PMID:17416596) BHF-UCL PMID:17416596 NCBI chrNW_004955492:7,863,662...7,874,863
Ensembl chrNW_004955492:7,866,833...7,873,357
JBrowse link
G Has2 hyaluronan synthase 2 ISO RGD PMID:27094859 RGD:12910548 NCBI chrNW_004955540:593,316...609,760
Ensembl chrNW_004955540:593,316...609,865
JBrowse link
G Notch1 notch receptor 1 involved_in ISO (MGI:5298073|PMID:21311046) BHF-UCL PMID:21311046 MGI:5298073 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259
JBrowse link
G Tie1 tyrosine kinase with immunoglobulin like and EGF like domains 1 acts_upstream_of ISO (MGI:6370101|PMID:31319059) BHF-UCL PMID:31319059 MGI:6370101 NCBI chrNW_004955537:2,894,913...2,914,284
Ensembl chrNW_004955537:2,894,914...2,914,284
JBrowse link
vitelline membrane formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:3766861|PMID:17881493) MGI PMID:17881493 MGI:3766861 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11939
    cellular process 11167
      cellular component organization or biogenesis 4951
        cellular component organization 4868
          cellular component assembly 2246
            extracellular matrix assembly 36
              basement membrane assembly + 7
              biofilm matrix assembly 0
              elastic fiber assembly 10
              negative regulation of extracellular matrix assembly + 1
              positive regulation of extracellular matrix assembly + 9
              regulation of extracellular matrix assembly + 14
              vitelline membrane formation + 1
Path 2
Term Annotations click to browse term
  biological_process 11939
    cellular process 11167
      cellular component organization or biogenesis 4951
        cellular component organization 4868
          extracellular structure organization 230
            extracellular matrix organization 229
              extracellular matrix assembly 36
                basement membrane assembly + 7
                biofilm matrix assembly 0
                elastic fiber assembly 10
                negative regulation of extracellular matrix assembly + 1
                positive regulation of extracellular matrix assembly + 9
                regulation of extracellular matrix assembly + 14
                vitelline membrane formation + 1
paths to the root