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ONTOLOGY REPORT - ANNOTATIONS


Term:extracellular matrix assembly
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Accession:GO:0085029 term browser browse the term
Definition:The aggregation, arrangement and bonding together of the extracellular matrix.


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extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL1A2 collagen type I alpha 2 chain acts_upstream_of_or_within ISO (MGI:5468210|PMID:22910579) MGI PMID:22910579 MGI:5468210 NCBI chr 7:86,344,657...86,381,282
Ensembl chr 7:99,935,185...99,971,803
JBrowse link
G FKBP10 FKBP prolyl isomerase 10 acts_upstream_of_or_within ISO (MGI:6094666|PMID:28774593) MGI PMID:28774593 MGI:6094666 NCBI chr17:15,490,667...15,500,894
Ensembl chr17:15,709,629...15,718,953
JBrowse link
G GPM6B glycoprotein M6B involved_in ISO (PMID:21638316) UniProt PMID:21638316 NCBI chr  X:6,377,913...6,544,826
Ensembl chr  X:13,666,192...13,711,964
JBrowse link
G HAPLN2 hyaluronan and proteoglycan link protein 2 acts_upstream_of_or_within ISO (MGI:4437139|PMID:20181608) MGI PMID:20181608 MGI:4437139 NCBI chr 1:131,962,801...131,969,331
Ensembl chr 1:135,785,754...135,792,652
JBrowse link
G HAS1 hyaluronan synthase 1 involved_in ISO (MGI:5508296|PMID:10455188) UniProt PMID:10455188 MGI:5508296 NCBI chr19:48,657,165...48,668,130
Ensembl chr19:57,537,049...57,547,804
JBrowse link
G HAS2 hyaluronan synthase 2 involved_in ISO (MGI:5508296|PMID:10455188) UniProt PMID:10455188 MGI:5508296 NCBI chr 8:118,313,186...118,342,160
Ensembl chr 8:121,072,154...121,089,365
JBrowse link
G HAS3 hyaluronan synthase 3 involved_in ISO (MGI:5508296|PMID:10455188) UniProt PMID:10455188 MGI:5508296 NCBI chr16:49,476,561...49,488,820
Ensembl chr16:68,868,416...68,877,476
JBrowse link
G QSOX1 quiescin sulfhydryl oxidase 1 involved_in ISO (PMID:23867277) UniProt PMID:23867277 NCBI chr 1:155,641,793...155,687,231
Ensembl chr 1:159,313,245...159,358,672
JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO (MGI:5468210|PMID:22910579) MGI PMID:22910579 MGI:5468210 NCBI chr16:48,734,664...48,825,241
Ensembl chr16:68,131,905...68,142,871
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in ISO (PMID:19734317)
(MGI:4820704|PMID:19734317)
BHF-UCL PMID:19734317 MGI:4820704 NCBI chr19:38,324,009...38,347,003
Ensembl chr19:46,831,659...46,852,973
JBrowse link
basement membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 acts_upstream_of_or_within ISO (MGI:3618677|PMID:16467571) MGI PMID:16467571 MGI:3618677 NCBI chr 7:93,347,335...93,358,921
Ensembl chr 7:106,587,858...106,599,605
JBrowse link
G RAMP2 receptor activity modifying protein 2 involved_in ISO (MGI:3772552|PMID:18097473) UniProt PMID:18097473 MGI:3772552 NCBI chr17:14,554,888...14,557,175
Ensembl chr17:14,779,666...14,781,481
JBrowse link
elastic fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha acts_upstream_of_or_within ISO (MGI:54141|PMID:937819), (MGI:54357|PMID:20889), (MGI:63907|PMID:3385878)
(MGI:3616522|PMID:16338116)
MGI PMID:20889 PMID:937819 PMID:3385878 PMID:16338116 MGI:3616522 MGI:54141 MGI:54357 MGI:63907 NCBI chr  X:67,093,675...67,231,318
Ensembl chr  X:77,255,312...77,342,756
JBrowse link
G EFEMP2 EGF containing fibulin extracellular matrix protein 2 involved_in
acts_upstream_of_or_within
ISO (PMID:18973305), (PMID:27339457)
(MGI:3619755|PMID:16478991), (MGI:4947512|PMID:20019329), (MGI:5660411|PMID:26178373), (MGI:6140729|PMID:28508064), (MGI:6158865|PMID:26711913)
(MGI:4397710|PMID:19855011)
UniProt
MGI
PMID:16478991 PMID:18973305 PMID:19855011 PMID:20019329 PMID:26178373 PMID:26711913 PMID:27339457 PMID:28508064 MGI:3619755 MGI:4397710 MGI:4947512 MGI:5660411 MGI:6140729 MGI:6158865 NCBI chr11:61,226,755...61,233,181
Ensembl chr11:64,555,877...64,561,950
JBrowse link
G EMILIN1 elastin microfibril interfacer 1 involved_in ISO (MGI:5605894|PMID:25056700) BHF-UCL PMID:25056700 MGI:5605894 NCBI chr2A:27,077,551...27,085,437
Ensembl chr2A:27,166,747...27,174,525
JBrowse link
G FBLN5 fibulin 5 involved_in ISO (PMID:17035250)
(MGI:2681470|PMID:11805835), (MGI:2681471|PMID:11805834)
UniProt
BHF-UCL
PMID:11805834 PMID:11805835 PMID:17035250 MGI:2681470 MGI:2681471 NCBI chr14:72,504,240...72,583,160
Ensembl chr14:91,848,430...91,927,304
JBrowse link
G LOC100992963 tenascin-X involved_in ISO (PMID:15102077) UniProt PMID:15102077 NCBI chr 6:31,687,994...31,756,279
Ensembl chr 6:32,571,199...32,626,155
JBrowse link
G LOX lysyl oxidase acts_upstream_of_or_within ISO (MGI:3604822|PMID:16192629), (MGI:3609311|PMID:12417550)
(MGI:5616293|PMID:23413430)
RGD
MGI
PMID:12417550 PMID:16192629 PMID:16432278 PMID:23413430 MGI:3604822 MGI:3609311 MGI:5616293 RGD:1600669 NCBI chr 5:117,450,833...117,464,957
Ensembl chr 5:123,234,662...123,248,717
JBrowse link
G LTBP4 latent transforming growth factor beta binding protein 4 involved_in ISO (MGI:5638486|PMID:25713297) UniProt PMID:25713297 MGI:5638486 NCBI chr19:37,637,509...37,674,791
Ensembl chr19:46,144,485...46,181,636
JBrowse link
G MFAP4 microfibril associated protein 4 involved_in ISO (PMID:22355679) BHF-UCL PMID:22355679 NCBI chr17:31,725,732...31,729,528
Ensembl chr17:36,890,778...36,893,230
JBrowse link
G MYH11 myosin heavy chain 11 involved_in ISO (PMID:16444274) UniProt PMID:16444274 Ensembl chr16:16,007,168...16,091,058 JBrowse link
G THSD4 thrombospondin type 1 domain containing 4 acts_upstream_of_or_within ISO (MGI:4453293|PMID:19940141) MGI PMID:19940141 MGI:4453293 NCBI chr15:50,067,560...50,732,761
Ensembl chr15:68,859,819...69,491,696
JBrowse link
negative regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANTXR1 ANTXR cell adhesion molecule 1 acts_upstream_of_or_within ISO (MGI:5662198|PMID:25572963) MGI PMID:25572963 MGI:5662198 NCBI chr2A:69,054,253...69,290,554
Ensembl chr2A:70,175,982...70,412,454
JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLASP1 cytoplasmic linker associated protein 1 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chr2B:8,265,626...8,574,282
Ensembl chr2B:121,840,484...122,102,793
JBrowse link
G CLASP2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chr 3:33,418,300...33,640,185
Ensembl chr 3:33,721,153...33,938,560
JBrowse link
G DAG1 dystroglycan 1 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chr 3:49,396,180...49,464,689
Ensembl chr 3:50,640,615...50,703,852
JBrowse link
G PHLDB1 pleckstrin homology like domain family B member 1 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chr11:113,446,275...113,496,941
Ensembl chr11:117,376,205...117,426,391
JBrowse link
G PHLDB2 pleckstrin homology like domain family B member 2 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chr 3:108,878,798...109,120,501
Ensembl chr 3:115,745,634...116,044,586
JBrowse link
positive regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EMILIN1 elastin microfibril interfacer 1 involved_in ISO (MGI:5605894|PMID:25056700) BHF-UCL PMID:25056700 MGI:5605894 NCBI chr2A:27,077,551...27,085,437
Ensembl chr2A:27,166,747...27,174,525
JBrowse link
G RGCC regulator of cell cycle involved_in ISO (PMID:21307346) BHF-UCL PMID:21307346 NCBI chr13:22,639,289...22,652,594
Ensembl chr13:41,228,643...41,241,909
JBrowse link
G SMAD3 SMAD family member 3 involved_in ISO (PMID:21307346) BHF-UCL PMID:21307346 NCBI chr15:46,013,764...46,143,126
Ensembl chr15:64,284,949...64,414,185
JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (MGI:4848001|PMID:20881014) MGI PMID:20881014 MGI:4848001 NCBI chr17:66,028,737...66,034,122 JBrowse link
regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGT angiotensinogen involved_in ISO (PMID:17416596) BHF-UCL PMID:17416596 NCBI chr 1:206,252,141...206,263,830
Ensembl chr 1:211,279,015...211,291,044
JBrowse link
G HAS2 hyaluronan synthase 2 ISO RGD PMID:27094859 RGD:12910548 NCBI chr 8:118,313,186...118,342,160
Ensembl chr 8:121,072,154...121,089,365
JBrowse link
G NOTCH1 notch receptor 1 involved_in ISO (MGI:5298073|PMID:21311046) BHF-UCL PMID:21311046 MGI:5298073 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740
JBrowse link
G TIE1 tyrosine kinase with immunoglobulin like and EGF like domains 1 acts_upstream_of ISO (MGI:6370101|PMID:31319059) BHF-UCL PMID:31319059 MGI:6370101 NCBI chr 1:42,602,333...42,624,471
Ensembl chr 1:43,979,838...44,002,167
JBrowse link
vitelline membrane formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:3766861|PMID:17881493) MGI PMID:17881493 MGI:3766861 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12613
    cellular process 11741
      cellular component organization or biogenesis 5098
        cellular component organization 5015
          cellular component assembly 2315
            extracellular matrix assembly 35
              basement membrane assembly + 7
              biofilm matrix assembly 0
              elastic fiber assembly 10
              negative regulation of extracellular matrix assembly + 1
              positive regulation of extracellular matrix assembly + 9
              regulation of extracellular matrix assembly + 14
              vitelline membrane formation + 1
Path 2
Term Annotations click to browse term
  biological_process 12613
    cellular process 11741
      cellular component organization or biogenesis 5098
        cellular component organization 5015
          extracellular structure organization 235
            extracellular matrix organization 234
              extracellular matrix assembly 35
                basement membrane assembly + 7
                biofilm matrix assembly 0
                elastic fiber assembly 10
                negative regulation of extracellular matrix assembly + 1
                positive regulation of extracellular matrix assembly + 9
                regulation of extracellular matrix assembly + 14
                vitelline membrane formation + 1
paths to the root