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ONTOLOGY REPORT - ANNOTATIONS


Term:T cell extravasation
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Accession:GO:0072683 term browser browse the term
Definition:The migration of a T cell from the blood vessels into the surrounding tissue.
Synonyms:exact_synonym: T lymphocyte extravasation



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T cell extravasation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd99 CD99 molecule (Xg blood group) involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3834537|PMID:17344467)
RGD PMID:17344467 PMID:21873635 MGI:3834537, RGD:13792537 NCBI chr20:54,418,239...54,422,882 JBrowse link
G Icam1 intercellular adhesion molecule 1 acts_upstream_of_or_within ISO (MGI:3834537|PMID:17344467) RGD PMID:17344467 MGI:3834537 NCBI chr 8:19,553,063...19,565,438
Ensembl chr 8:19,553,645...19,565,438
JBrowse link
helper T cell diapedesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crk CRK proto-oncogene, adaptor protein acts_upstream_of_or_within ISO MGI:104686 (MGI:5634599|PMID:25621495) RGD PMID:25621495 MGI:5634599 NCBI chr10:60,530,469...60,556,703
Ensembl chr10:60,530,464...60,553,406
JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO MGI:88508 (MGI:5634599|PMID:25621495) RGD PMID:25621495 MGI:5634599 NCBI chr11:83,528,788...83,563,214
Ensembl chr11:83,526,530...83,563,238
JBrowse link
helper T cell extravasation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl2 C-C motif chemokine ligand 2 involved_in ISO (MGI:3812298|PMID:18586982) RGD PMID:18586982 MGI:3812298 NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226
JBrowse link
memory T cell extravasation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G F11r F11 receptor involved_in ISO (PMID:11812992) RGD PMID:11812992 NCBI chr13:83,873,797...83,897,388
Ensembl chr13:83,873,797...83,897,402
JBrowse link
G Itgal integrin subunit alpha L involved_in ISO (PMID:11812992) RGD PMID:11812992 NCBI chr 1:181,918,183...181,955,735
Ensembl chr 1:181,918,183...181,955,732
JBrowse link
negative regulation of T cell extravasation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il27ra interleukin 27 receptor subunit alpha involved_in ISO UniProtKB:P35951 (MGI:5581894|PMID:22927332) RGD PMID:22927332 MGI:5581894 NCBI chr19:24,109,698...24,121,977
Ensembl chr19:24,109,972...24,121,938
JBrowse link
positive regulation of CD8-positive, alpha-beta cytotoxic T cell extravasation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fadd Fas associated via death domain involved_in ISS
ISO
GO_REF:0000024
(MGI:5291865|PMID:21876153)
UniProt
RGD
PMID:21876153 GO_REF:0000024 MGI:5291865 NCBI chr 1:199,743,200...199,745,746
Ensembl chr 1:199,739,994...199,745,653
JBrowse link
positive regulation of CD8-positive, alpha-beta T cell extravasation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccr2 C-C motif chemokine receptor 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:3699670|PMID:14662900)
BHF-UCL
RGD
PMID:14662900 GO_REF:0000024 MGI:3699670 NCBI chr 8:123,734,465...123,742,483
Ensembl chr 8:123,734,430...123,742,100
JBrowse link
positive regulation of T cell extravasation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd99l2 CD99 molecule-like 2 acts_upstream_of_or_within ISO (MGI:5467432|PMID:23293350) RGD PMID:23293350 MGI:5467432
G Med23 mediator complex subunit 23 acts_upstream_of_or_within ISO MGI:3526093|MGI:5568337 (MGI:5615958|PMID:25054639) RGD PMID:25054639 MGI:5615958 NCBI chr 1:20,490,315...20,558,461
Ensembl chr 1:20,490,315...20,537,463
JBrowse link
regulation of CD8-positive, alpha-beta cytotoxic T cell extravasation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ripk3 receptor-interacting serine-threonine kinase 3 involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q61160 (MGI:5291865|PMID:21876153)
UniProt
RGD
PMID:21876153 GO_REF:0000024 MGI:5291865 NCBI chr15:29,283,153...29,292,107
Ensembl chr15:29,283,145...29,292,121
JBrowse link
T-helper 1 cell diapedesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl5 C-C motif chemokine ligand 5 involved_in IDA PMID:10477596 BHF-UCL PMID:10477596 RGD:8553666 NCBI chr10:68,322,826...68,327,365
Ensembl chr10:68,322,829...68,327,377
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19541
    immune system process 2852
      leukocyte migration 394
        cellular extravasation 80
          T cell extravasation 14
            CD8-positive, alpha-beta T cell extravasation + 4
            helper T cell extravasation + 4
            memory T cell extravasation 2
            negative regulation of T cell extravasation + 1
            positive regulation of T cell extravasation + 4
            regulation of T cell extravasation + 6
Path 2
Term Annotations click to browse term
  biological_process 19541
    cellular process 18407
      movement of cell or subcellular component 2230
        cell motility 1797
          cell migration 1594
            leukocyte migration 394
              mononuclear cell migration 191
                lymphocyte migration 111
                  T cell migration 68
                    T cell extravasation 14
                      CD8-positive, alpha-beta T cell extravasation + 4
                      helper T cell extravasation + 4
                      memory T cell extravasation 2
                      negative regulation of T cell extravasation + 1
                      positive regulation of T cell extravasation + 4
                      regulation of T cell extravasation + 6
paths to the root