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ONTOLOGY REPORT - ANNOTATIONS


Term:tRNA-splicing ligase complex
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Accession:GO:0072669 term browser browse the term
Definition:A protein complex that catalyzes the ligation of cleaved pre-tRNAs by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester.
Synonyms:xref: MetaCyc:ENTMULTI-CPLX


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tRNA-splicing ligase complex term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07053472.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:108,944,141...108,977,721 JBrowse link
G Ddx1 DEAD-box helicase 1 ISS
ISO
GO_REF:0000024
(PMID:21311021), (PMID:24870230)
UniProt
RGD
PMID:21311021, PMID:24870230 GO_REF:0000024 NCBI chr 6:38,422,892...38,453,762
Ensembl chr 6:38,422,888...38,453,797
JBrowse link
G Fam98a family with sequence similarity 98, member A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:21,051,327...21,065,986
Ensembl chr 6:21,051,327...21,065,986
JBrowse link
G Fam98b family with sequence similarity 98, member B ISO (PMID:21311021), (PMID:24870230) RGD PMID:21311021, PMID:24870230 NCBI chr 3:108,944,094...108,977,480 JBrowse link
G Fam98c family with sequence similarity 98, member C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:88,095,240...88,098,828
Ensembl chr 1:88,095,241...88,098,785
JBrowse link
G RGD1310553 similar to expressed sequence AI597479 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:21311021), (PMID:24870230)
UniProt
RGD
PMID:21311021, PMID:24870230, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:49,903,085...49,913,754
Ensembl chr 9:49,903,085...49,913,744
JBrowse link
G Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:21311021), (PMID:24870230)
UniProt
RGD
PMID:21311021, PMID:24870230, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:23,913,830...23,933,191
Ensembl chr 7:23,913,830...23,933,191
JBrowse link
G Rtraf RNA transcription, translation and transport factor ISO (PMID:21311021), (PMID:24870230) RGD PMID:21311021, PMID:24870230 NCBI chr15:4,882,925...4,893,890
Ensembl chr15:4,882,947...4,893,919
JBrowse link
G Zbtb8os zinc finger and BTB domain containing 8 opposite strand ISO
IBA
(PMID:24870230)
PMID:21873635
RGD PMID:24870230, PMID:21873635 RGD:13792537 NCBI chr 5:147,535,584...147,547,252
Ensembl chr 5:147,535,525...147,547,047
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20610
    protein-containing complex 6104
      tRNA-splicing ligase complex 9
Path 2
Term Annotations click to browse term
  cellular_component 20610
    cellular anatomical entity 20359
      intracellular anatomical structure 14705
        tRNA-splicing ligase complex 9
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.