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ONTOLOGY REPORT - ANNOTATIONS


Term:protein localization to vacuole
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Accession:GO:0072665 term browser browse the term
Definition:A process in which a protein is transported to, or maintained at, a location in a vacuole.
Synonyms:exact_synonym: protein localisation to vacuole


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protein localization to vacuole term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gbp1 guanylate binding protein 1 ISO (PMID:21151871) RGD PMID:21151871 NCBI chr 2:248,343,334...248,423,402
Ensembl chr 2:248,398,917...248,409,570
JBrowse link
G Umod uromodulin ISO
IEA
(MGI:MGI:6406760|PMID:21081491)
GO_REF:0000107
RGD
Ensembl
PMID:21081491 GO_REF:0000107, MGI:MGI:6406760 NCBI chr 1:189,186,027...189,199,939
Ensembl chr 1:189,186,026...189,199,376
JBrowse link
establishment of protein localization to vacuole term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tnfaip3 TNF alpha induced protein 3 ISO (MGI:MGI:3839729|PMID:18952128) RGD PMID:18952128 MGI:MGI:3839729 NCBI chr 1:14,401,103...14,416,369
Ensembl chr 1:14,402,913...14,412,807
JBrowse link
N-glycan processing to lysosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnptab N-acetylglucosamine-1-phosphate transferase subunits alpha and beta ISO
IBA
(PMID:19938078), (PMID:25505245)
PMID:21873635
RGD PMID:19938078, PMID:25505245, PMID:21873635 RGD:13792537 NCBI chr 7:28,956,363...29,023,232
Ensembl chr 7:28,956,512...29,022,868
JBrowse link
negative regulation of protein localization to lysosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rock2 Rho-associated coiled-coil containing protein kinase 2 IEA
ISO
GO_REF:0000107
(PMID:24305806)
Ensembl
RGD
PMID:24305806 GO_REF:0000107 NCBI chr 6:42,180,864...42,289,910
Ensembl chr 6:42,180,894...42,289,908
JBrowse link
neurotransmitter receptor transport, postsynaptic endosome to lysosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3d1 adaptor related protein complex 3 subunit delta 1 ISO
IBA
(MGI:MGI:5819335|PMID:24217640)
PMID:21873635
RGD PMID:24217640, PMID:21873635 MGI:MGI:5819335, RGD:13792537 NCBI chr 7:11,838,639...11,873,992
Ensembl chr 7:11,838,639...11,873,984
JBrowse link
G Cacng2 calcium voltage-gated channel auxiliary subunit gamma 2 ISO
IBA
(MGI:MGI:5819335|PMID:24217640)
PMID:21873635
RGD PMID:24217640, PMID:21873635 MGI:MGI:5819335, RGD:13792537 NCBI chr 7:119,228,112...119,353,332
Ensembl chr 7:119,228,102...119,352,605
JBrowse link
G Cacng3 calcium voltage-gated channel auxiliary subunit gamma 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:192,613,766...192,708,371
Ensembl chr 1:192,613,372...192,709,078
JBrowse link
G Cacng4 calcium voltage-gated channel auxiliary subunit gamma 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:95,954,160...96,015,484
Ensembl chr10:95,951,234...96,015,499
JBrowse link
G Cacng5 calcium voltage-gated channel auxiliary subunit gamma 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:96,122,240...96,166,606
Ensembl chr10:96,123,397...96,131,880
JBrowse link
G Cacng7 calcium voltage-gated channel auxiliary subunit gamma 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:64,374,547...64,405,380
Ensembl chr 1:64,374,603...64,405,149
JBrowse link
G Cacng8 calcium voltage-gated channel auxiliary subunit gamma 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:64,330,106...64,350,338
Ensembl chr 1:64,330,106...64,350,338
JBrowse link
positive regulation of protein localization to lysosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr137b G protein-coupled receptor 137B ISO (PMID:31036939) RGD PMID:31036939 NCBI chr17:90,670,852...90,709,003
Ensembl chr17:90,670,872...90,746,804
JBrowse link
G Meak7 MTOR associated protein, eak-7 homolog ISO (PMID:29750193) RGD PMID:29750193 NCBI chr19:52,408,700...52,430,198
Ensembl chr19:52,408,917...52,424,318
JBrowse link
protein localization to lysosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 ISO (PMID:30538141)
(MGI:MGI:6273736|PMID:30538141)
RGD PMID:30538141 MGI:MGI:6273736 NCBI chr 5:159,512,208...159,531,631
Ensembl chr 5:159,512,285...159,531,637
JBrowse link
G Cd81 Cd81 molecule ISO
IEA
(PMID:25635054)
GO_REF:0000107
RGD
Ensembl
PMID:25635054 GO_REF:0000107 NCBI chr 1:216,237,663...216,253,460
Ensembl chr 1:216,237,697...216,253,311
JBrowse link
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 ISO (MGI:MGI:5751042|PMID:25592972) RGD PMID:25592972 MGI:MGI:5751042 NCBI chr10:104,137,655...104,156,576
Ensembl chr10:104,137,655...104,156,576
JBrowse link
G Kptn kaptin (actin binding protein) ISO (PMID:28199306) RGD PMID:28199306 NCBI chr 1:78,015,714...78,016,508 JBrowse link
G Kptn kaptin IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 1:78,015,722...78,023,676 JBrowse link
G Lamtor4 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 ISO (PMID:22980980) RGD PMID:22980980 NCBI chr12:19,573,909...19,577,625
Ensembl chr12:19,573,909...19,577,624
JBrowse link
G Lamtor5 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 ISO (PMID:22980980) RGD PMID:22980980 NCBI chr 2:210,034,095...210,039,451
Ensembl chr 2:210,034,095...210,039,451
JBrowse link
G RGD1565498 similar to Hypothetical protein LOC270802 ISO
IBA
(PMID:28199306)
PMID:21873635
RGD PMID:28199306, PMID:21873635 RGD:13792537 NCBI chr 7:63,922,871...63,937,721
Ensembl chr 7:63,922,879...63,936,385
JBrowse link
G Rtn4 reticulon 4 ISS
ISO
IEA
GO_REF:0000024
(MGI:MGI:6274965|PMID:25917084)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:25917084 GO_REF:0000024, GO_REF:0000107, MGI:MGI:6274965 NCBI chr14:114,126,931...114,174,459
Ensembl chr14:114,126,943...114,174,458
JBrowse link
G Sh3bp4 SH3-domain binding protein 4 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:22575674)
Ensembl
UniProt
RGD
PMID:22575674 GO_REF:0000024, GO_REF:0000107 NCBI chr 9:96,210,750...96,288,903
Ensembl chr 9:96,210,750...96,288,903
JBrowse link
G Szt2 SZT2 subunit of KICSTOR complex ISO (PMID:28199306) RGD PMID:28199306 NCBI chr 5:137,192,120...137,238,384
Ensembl chr 5:137,190,875...137,238,354
JBrowse link
protein localization to vacuolar membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 IEA
ISO
GO_REF:0000107
(PMID:21068542)
(MGI:MGI:5634888|PMID:21068542)
Ensembl
RGD
PMID:21068542 GO_REF:0000107, MGI:MGI:5634888 NCBI chr 2:250,709,812...250,744,216
Ensembl chr 2:250,709,439...250,744,196
JBrowse link
protein targeting to lysosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 ISO MGI:MGI:1856989 (MGI:MGI:2679144|PMID:14557411) RGD PMID:14557411 MGI:MGI:2679144 NCBI chr 2:24,022,815...24,227,522
Ensembl chr 2:24,024,791...24,226,224
JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 ISO (PMID:11139587) RGD PMID:11139587 NCBI chr12:19,314,222...19,320,339
Ensembl chr12:19,314,251...19,320,142
JBrowse link
G Gcc2 GRIP and coiled-coil domain containing 2 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:16885419)
Ensembl
UniProt
RGD
PMID:16885419, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr20:27,832,960...27,879,764
Ensembl chr20:27,832,932...27,879,759
JBrowse link
G Hgs hepatocyte growth factor-regulated tyrosine kinase substrate IEA
ISO
GO_REF:0000107
(PMID:18767904)
Ensembl
RGD
PMID:18767904 GO_REF:0000107 NCBI chr10:109,638,944...109,657,460
Ensembl chr10:109,638,767...109,657,456
JBrowse link
G Lhcgr luteinizing hormone/choriogonadotropin receptor IMP chorionic gonadotropin after receptor internalization RGD PMID:10847593 RGD:2292601 NCBI chr 6:12,493,182...12,554,482
Ensembl chr 6:12,493,943...12,554,439
JBrowse link
G LOC100909548 cation-dependent mannose-6-phosphate receptor-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:88,312,689...88,321,836
Ensembl chr  X:88,312,675...88,321,834
JBrowse link
G M6pr mannose-6-phosphate receptor, cation dependent IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,084,755...155,093,896
Ensembl chr 4:155,088,317...155,092,827
JBrowse link
G Ncoa4 nuclear receptor coactivator 4 ISO (PMID:25327288) RGD PMID:25327288 NCBI chr16:8,302,950...8,323,294
Ensembl chr16:8,302,950...8,323,293
JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase ISO
IBA
(PMID:17116753)
PMID:21873635
RGD PMID:17116753, PMID:21873635 RGD:13792537 NCBI chr 8:79,323,408...79,408,842
Ensembl chr 8:79,323,408...79,408,833
JBrowse link
G Numa1 nuclear mitotic apparatus protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:167,044,544...167,091,453
Ensembl chr 1:167,051,209...167,091,453
JBrowse link
G Rab7a RAB7A, member RAS oncogene family ISO (PMID:22115783) RGD PMID:22115783 NCBI chr 4:119,910,461...119,963,065
Ensembl chr 4:119,910,478...119,959,173
JBrowse link
G Scarb2 scavenger receptor class B, member 2 ISO (MGI:MGI:3773765|PMID:18022370)
(PMID:18022370)
RGD PMID:18022370 MGI:MGI:3773765 NCBI chr14:17,064,173...17,115,620
Ensembl chr14:17,064,353...17,115,963
JBrowse link
G Snx16 sorting nexin 16 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:12813048)
Ensembl
UniProt
RGD
PMID:12813048, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 2:93,518,796...93,541,056
Ensembl chr 2:93,518,806...93,540,328
JBrowse link
G Sorl1 sortilin related receptor 1 ISO (PMID:24523320) RGD PMID:24523320 NCBI chr 8:46,228,077...46,287,171 JBrowse link
G Sort1 sortilin 1 ISO MGI:MGI:4397584 (MGI:MGI:4368056|PMID:19732768) RGD PMID:19732768 MGI:MGI:4368056 NCBI chr 2:211,078,092...211,156,312
Ensembl chr 2:211,078,334...211,156,312
JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A ISO (PMID:16973552) RGD PMID:16973552 NCBI chr19:39,230,050...39,243,298
Ensembl chr19:39,229,754...39,243,496
JBrowse link
G Zfyve16 zinc finger FYVE-type containing 16 ISO
IBA
(PMID:11546807)
PMID:21873635
RGD PMID:11546807, PMID:21873635 RGD:13792537 NCBI chr 2:22,060,879...22,105,822
Ensembl chr 2:22,062,050...22,105,710
JBrowse link
protein targeting to lysosome involved in chaperone-mediated autophagy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07011951.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:177,651,241...177,653,288 JBrowse link
G AABR07033324.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr11:17,336,444...17,340,373 JBrowse link
G AABR07048992.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:99,031,013...99,033,107 JBrowse link
G Hsc70-ps1 heat shock cognate protein 70, pseudogene 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:177,651,231...177,653,349 JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 ISO
IBA
(PMID:26212789)
PMID:21873635
RGD PMID:26212789, PMID:21873635 RGD:13792537 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 IGI
IBA
ISS
ISO
IMP
PMID:18644871
PMID:21873635
GO_REF:0000024
(MGI:MGI:5805578|PMID:27628032)
(PMID:27628032)
UniProt
RGD
PMID:27628032, PMID:18644871, PMID:21873635, PMID:18644871 GO_REF:0000024, MGI:MGI:5805578, RGD:10412301, RGD:13792537, RGD:10412301 NCBI chr  X:124,722,628...124,766,079
Ensembl chr  X:124,722,628...124,766,044
JBrowse link
G LOC100363133 heat shock cognate 71 kDa protein-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:99,030,998...99,033,110 JBrowse link
G LOC680121 similar to heat shock protein 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:13,499,168...13,501,271
Ensembl chr11:13,499,164...13,501,263
JBrowse link
protein targeting to vacuole term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07006458.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:235,387,153...235,405,831 JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:11,838,639...11,873,992
Ensembl chr 7:11,838,639...11,873,984
JBrowse link
G Gosr2 golgi SNAP receptor complex member 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:91,735,772...91,756,123
Ensembl chr10:91,736,780...91,756,081
JBrowse link
G Mon1a MON1 homolog A, secretory trafficking associated IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:116,657,345...116,682,172
Ensembl chr 8:116,657,371...116,682,178
JBrowse link
G Mon1b MON1 homolog B, secretory trafficking associated IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr19:45,938,433...45,946,647
Ensembl chr19:45,938,915...45,945,741
JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:114,300,248...114,350,686
Ensembl chr 8:114,300,257...114,350,681
JBrowse link
G Rnf215 ring finger protein 215 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:84,368,440...84,374,879
Ensembl chr14:84,368,476...84,374,879
JBrowse link
G Vps13c vacuolar protein sorting 13 homolog C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:73,682,814...73,843,290
Ensembl chr 8:73,682,887...73,842,928
JBrowse link
G Vps13d vacuolar protein sorting 13 homolog D IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:162,891,451...163,119,239
Ensembl chr 5:162,891,451...163,119,239
JBrowse link
G Vps37a VPS37A subunit of ESCRT-I IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:54,860,811...54,899,410
Ensembl chr16:54,860,868...54,899,347
JBrowse link
G Vps37b VPS37B subunit of ESCRT-I IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:37,984,790...38,023,369
Ensembl chr12:37,984,790...38,023,368
JBrowse link
G Vps37c VPS37C subunit of ESCRT-I IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:226,742,267...226,774,109
Ensembl chr 1:226,742,343...226,767,868
JBrowse link
G Vps37d VPS37D subunit of ESCRT-I IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:24,651,342...24,656,793
Ensembl chr12:24,651,314...24,656,793
JBrowse link
G Vps41 VPS41 subunit of HOPS complex IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:48,643,754...48,810,633
Ensembl chr17:48,648,879...48,810,991
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:276,310,072...276,508,635
Ensembl chr 1:276,309,927...276,490,602
JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:102,340,261...102,353,612
Ensembl chr 6:102,339,857...102,353,403
JBrowse link
protein targeting to vacuole involved in autophagy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:11,433,815...11,526,465
Ensembl chr12:11,407,213...11,526,465
JBrowse link
protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snf8 SNF8 subunit of ESCRT-II IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:83,856,331...83,868,621
Ensembl chr10:83,856,280...83,868,598
JBrowse link
G Stam signal transducing adaptor molecule IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:81,209,795...81,256,111
Ensembl chr17:81,209,867...81,255,808
JBrowse link
G Vps25 vacuolar protein sorting 25 homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:89,174,684...89,180,165
Ensembl chr10:89,174,684...89,180,160
JBrowse link
G Vps28 VPS28 subunit of ESCRT-I IEA
IBA
GO_REF:0000104
PMID:21873635
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 7:117,684,339...117,688,187
Ensembl chr 7:117,684,339...117,688,187
JBrowse link
G Vps36 vacuolar protein sorting 36 homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:74,719,642...74,743,921
Ensembl chr16:74,719,553...74,743,927
JBrowse link
regulation of protein targeting to vacuolar membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vamp7 vesicle-associated membrane protein 7 ISO (MGI:MGI:3774712|PMID:18227281) RGD PMID:18227281 MGI:MGI:3774712 NCBI chr12:18,996,566...19,033,714
Ensembl chr12:18,996,591...19,030,381
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    localization 6486
      macromolecule localization 3084
        protein localization 2691
          cellular protein localization 1910
            protein localization to organelle 921
              protein localization to vacuole 73
                establishment of protein localization to vacuole + 56
                maintenance of protein location in vacuole 0
                protein localization to lysosome + 47
                protein localization to vacuolar membrane + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.