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ONTOLOGY REPORT - ANNOTATIONS

Term:neurotransmitter-gated ion channel clustering
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Accession:GO:0072578 term browser browse the term
Definition:The receptor clustering process in which neurotransmitter-gated ion channels are localized to distinct domains in the cell membrane.

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neurotransmitter-gated ion channel clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrtm4 leucine rich repeat transmembrane neuronal 4 acts_upstream_of_or_within ISO (PMID:23911104) MGI PMID:23911104 NCBI chrNW_004936556:2,760,294...3,493,517
Ensembl chrNW_004936556:2,761,351...3,494,059 		JBrowse link
G Nlgn2 neuroligin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:692,340...704,650
Ensembl chrNW_004936595:692,334...704,602 		JBrowse link
G Slitrk3 SLIT and NTRK like family member 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936707:1,315,267...1,324,793
Ensembl chrNW_004936707:1,315,267...1,324,026 		JBrowse link
AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E acts_upstream_of_or_within_positive_effect ISO (PMID:24328732) Alzheimers_University_of_Toronto PMID:24328732 NCBI chrNW_004936706:1,512,438...1,516,805 JBrowse link
G Chrdl1 chordin like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936499:4,474,899...4,587,563
Ensembl chrNW_004936499:4,474,884...4,587,501 		JBrowse link
G Dlg4 discs large MAGUK scaffold protein 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936595:487,918...513,843
Ensembl chrNW_004936595:485,554...513,815 		JBrowse link
G Lrrtm4 leucine rich repeat transmembrane neuronal 4 acts_upstream_of_or_within ISO (PMID:23911104) MGI PMID:23911104 NCBI chrNW_004936556:2,760,294...3,493,517
Ensembl chrNW_004936556:2,761,351...3,494,059 		JBrowse link
G Nlgn1 neuroligin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936703:951,935...1,415,991
Ensembl chrNW_004936703:758,647...1,414,185 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:114,175...168,697
Ensembl chrNW_004936629:114,850...167,505 		JBrowse link
gamma-aminobutyric acid receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Glrb glycine receptor beta acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936576:3,665,128...3,752,592
Ensembl chrNW_004936576:3,664,877...3,754,936 		JBrowse link
G Gphn gephyrin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19723286) Ensembl
TreeGrafter
MGI		 PMID:19723286 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936495:9,970,683...10,565,467
Ensembl chrNW_004936495:9,972,007...10,564,591 		JBrowse link
G Lhfpl4 LHFPL tetraspan subfamily member 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936602:3,532,979...3,564,062
Ensembl chrNW_004936602:3,532,005...3,564,680 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (PMID:15620359) BHF-UCL PMID:15620359 NCBI chrNW_004936508:1,889,640...2,954,039 JBrowse link
G Shisa7 shisa family member 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936886:664,075...675,008
Ensembl chrNW_004936886:664,052...682,618 		JBrowse link
glycine receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gphn gephyrin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9812897) MGI
TreeGrafter		 PMID:9812897 GO_REF:0000118 NCBI chrNW_004936495:9,970,683...10,565,467
Ensembl chrNW_004936495:9,972,007...10,564,591 		JBrowse link
NMDA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E acts_upstream_of_or_within_positive_effect ISO (PMID:24328732) Alzheimers_University_of_Toronto PMID:24328732 NCBI chrNW_004936706:1,512,438...1,516,805 JBrowse link
G Htr1a 5-hydroxytryptamine receptor 1A ISO RGD PMID:18442977 RGD:7241017 NCBI chrNW_004936480:5,042,531...5,047,157
Ensembl chrNW_004936480:5,043,204...5,044,472 		JBrowse link
G Nlgn1 neuroligin 1 involved_in ISO PMID:19450252
(PMID:23143522)		 BHF-UCL PMID:19450252 PMID:23143522 RGD:8553605 NCBI chrNW_004936703:951,935...1,415,991
Ensembl chrNW_004936703:758,647...1,414,185 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (PMID:15620359) BHF-UCL PMID:15620359 NCBI chrNW_004936508:1,889,640...2,954,039 JBrowse link
G Reln reelin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:19,628,488...20,088,278
Ensembl chrNW_004936479:19,628,940...20,087,250 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:114,175...168,697
Ensembl chrNW_004936629:114,850...167,505 		JBrowse link
positive regulation of AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlg4 discs large MAGUK scaffold protein 4 involved_in ISO PMID:19596852 UniProt PMID:19596852 RGD:21201259 NCBI chrNW_004936595:487,918...513,843
Ensembl chrNW_004936595:485,554...513,815 		JBrowse link
G Grip2 glutamate receptor interacting protein 2 involved_in ISO PMID:20083202 UniProt PMID:20083202 RGD:4107359 NCBI chrNW_004936602:276,964...334,942
Ensembl chrNW_004936602:278,252...314,720 		JBrowse link
G Snx27 sorting nexin 27 ISO RGD PMID:25071192 RGD:13508620 NCBI chrNW_004936580:1,815,582...1,893,076
Ensembl chrNW_004936580:1,815,651...1,893,753 		JBrowse link
G Ssh1 slingshot protein phosphatase 1 ISO RGD PMID:20442266 RGD:11535133 NCBI chrNW_004936769:665,146...721,131
Ensembl chrNW_004936769:669,793...697,893 		JBrowse link
G Zdhhc2 zDHHC palmitoyltransferase 2 involved_in ISO PMID:19596852 UniProt PMID:19596852 RGD:21201259 NCBI chrNW_004936573:6,216,084...6,280,142
Ensembl chrNW_004936573:6,216,078...6,282,052 		JBrowse link
regulation of AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frrs1l ferric chelate reductase 1 like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:3,723,325...3,753,209
Ensembl chrNW_004936559:3,722,890...3,750,919 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:114,175...168,697
Ensembl chrNW_004936629:114,850...167,505 		JBrowse link
G Shisa6 shisa family member 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:3,973,099...4,152,706
Ensembl chrNW_004936595:4,026,604...4,304,857 		JBrowse link
G Shisa7 shisa family member 7 involved_in
NOT|involved_in		 IEA
ISO		 (PMID:31601770) Ensembl
UniProt		 PMID:31601770 GO_REF:0000107 NCBI chrNW_004936886:664,075...675,008
Ensembl chrNW_004936886:664,052...682,618 		JBrowse link
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:9,177,305...9,242,743
Ensembl chrNW_004936535:9,177,143...9,242,566 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17417
    localization 5151
      cellular localization 3416
        localization within membrane 740
          protein localization to membrane 650
            receptor clustering 85
              neurotransmitter-gated ion channel clustering 22
                NMDA glutamate receptor clustering 6
                gamma-aminobutyric acid receptor clustering 5
                glutamate receptor clustering + 14
                glycine receptor clustering 1
Path 2
Term Annotations click to browse term
  biological_process 17417
    localization 5151
      macromolecule localization 2878
        cellular macromolecule localization 2492
          protein localization 2480
            protein localization to membrane 650
              receptor clustering 85
                neurotransmitter-gated ion channel clustering 22
                  NMDA glutamate receptor clustering 6
                  gamma-aminobutyric acid receptor clustering 5
                  glutamate receptor clustering + 14
                  glycine receptor clustering 1
paths to the root