Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:neurotransmitter-gated ion channel clustering
go back to main search page
Accession:GO:0072578 term browser browse the term
Definition:The receptor clustering process in which neurotransmitter-gated ion channels are localized to distinct domains in the cell membrane.


show annotations for term's descendants           Sort by:
neurotransmitter-gated ion channel clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRRTM4 leucine rich repeat transmembrane neuronal 4 acts_upstream_of_or_within ISO (PMID:23911104) MGI PMID:23911104 NCBI chr 3:66,128,650...66,884,916
Ensembl chr 3:66,128,689...66,884,740 		JBrowse link
G SLITRK3 SLIT and NTRK like family member 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:104,443,610...104,461,850
Ensembl chr13:104,449,973...104,461,119 		JBrowse link
AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOE apolipoprotein E acts_upstream_of_or_within_positive_effect IEA Ensembl GO_REF:0000107 NCBI chr 6:51,373,113...51,375,333
Ensembl chr 6:51,372,292...51,375,330 		JBrowse link
G CHRDL1 chordin like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:90,703,422...90,827,216
Ensembl chr  X:90,703,428...90,827,210 		JBrowse link
G DLG4 discs large MAGUK scaffold protein 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:52,550,138...52,574,021
Ensembl chr12:52,550,141...52,575,143 		JBrowse link
G LRRTM4 leucine rich repeat transmembrane neuronal 4 acts_upstream_of_or_within ISO (PMID:23911104) MGI PMID:23911104 NCBI chr 3:66,128,650...66,884,916
Ensembl chr 3:66,128,689...66,884,740 		JBrowse link
G NLGN1 neuroligin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:111,851,007...112,727,202
Ensembl chr13:112,035,854...112,725,618 		JBrowse link
G SHANK3 SH3 and multiple ankyrin repeat domains 3 involved_in ISO (PMID:21558424), (PMID:21795692) CACAO PMID:21558424 PMID:21795692 NCBI chr 5:41,376...93,033
Ensembl chr 5:41,786...93,177 		JBrowse link
gamma-aminobutyric acid receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLRB glycine receptor beta acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:45,912,869...46,034,455
Ensembl chr 8:45,912,938...46,034,448 		JBrowse link
G GPHN gephyrin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19723286) Ensembl
MGI		 PMID:19723286 GO_REF:0000107 NCBI chr 7:90,345,726...90,913,625
Ensembl chr 7:90,346,714...90,916,455 		JBrowse link
G LHFPL4 LHFPL tetraspan subfamily member 4 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr13:65,867,124...65,920,887
Ensembl chr13:65,869,652...65,919,781 		JBrowse link
G NRXN1 neurexin 1 involved_in ISO (PMID:15620359) BHF-UCL PMID:15620359 NCBI chr 3:89,799,426...90,914,205
Ensembl chr 3:89,803,519...90,382,034 		JBrowse link
G SHISA7 shisa family member 7 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:59,582,706...59,601,979
Ensembl chr 6:59,582,708...59,601,885 		JBrowse link
glycine receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GPHN gephyrin acts_upstream_of_or_within ISO (PMID:9812897) MGI PMID:9812897 NCBI chr 7:90,345,726...90,913,625
Ensembl chr 7:90,346,714...90,916,455 		JBrowse link
NMDA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOE apolipoprotein E acts_upstream_of_or_within_positive_effect IEA Ensembl GO_REF:0000107 NCBI chr 6:51,373,113...51,375,333
Ensembl chr 6:51,372,292...51,375,330 		JBrowse link
G HTR1A 5-hydroxytryptamine receptor 1A ISO RGD PMID:18442977 RGD:7241017 NCBI chr16:42,479,812...42,484,365
Ensembl chr16:42,478,923...42,484,304 		JBrowse link
G NLGN1 neuroligin 1 involved_in ISO PMID:19450252
(PMID:23143522)		 BHF-UCL PMID:19450252 PMID:23143522 RGD:8553605 NCBI chr13:111,851,007...112,727,202
Ensembl chr13:112,035,854...112,725,618 		JBrowse link
G NRXN1 neurexin 1 involved_in ISO (PMID:15620359) BHF-UCL PMID:15620359 NCBI chr 3:89,799,426...90,914,205
Ensembl chr 3:89,803,519...90,382,034 		JBrowse link
G RELN reelin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:103,460,855...103,963,728
Ensembl chr 9:103,460,863...103,963,883 		JBrowse link
G SHANK3 SH3 and multiple ankyrin repeat domains 3 involved_in ISO (PMID:21558424) CACAO PMID:21558424 NCBI chr 5:41,376...93,033
Ensembl chr 5:41,786...93,177 		JBrowse link
positive regulation of AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLG4 discs large MAGUK scaffold protein 4 involved_in ISO PMID:19596852 UniProt PMID:19596852 RGD:21201259 NCBI chr12:52,550,138...52,574,021
Ensembl chr12:52,550,141...52,575,143 		JBrowse link
G GRIP2 glutamate receptor interacting protein 2 involved_in ISO PMID:20083202 UniProt PMID:20083202 RGD:4107359 NCBI chr13:69,949,608...70,088,719
Ensembl chr13:69,988,459...70,088,718 		JBrowse link
G SNX27 sorting nexin 27 ISO RGD PMID:25071192 RGD:13508620 NCBI chr 4:97,533,643...97,620,816
Ensembl chr 4:97,525,181...97,620,788 		JBrowse link
G SSH1 slingshot protein phosphatase 1 ISO RGD PMID:20442266 RGD:11535133 NCBI chr14:41,963,946...42,030,842
Ensembl chr14:41,968,466...42,025,726 		JBrowse link
G ZDHHC2 zinc finger DHHC-type palmitoyltransferase 2 involved_in ISO PMID:19596852 UniProt PMID:19596852 RGD:21201259 NCBI chr17:4,855,129...4,928,109
Ensembl chr17:4,855,345...4,928,664 		JBrowse link
regulation of AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FRRS1L ferric chelate reductase 1 like acts_upstream_of_or_within ISO (PMID:29276473) MGI PMID:29276473 NCBI chr 1:250,187,568...250,220,716
Ensembl chr 1:250,194,230...250,220,716 		JBrowse link
G SHANK3 SH3 and multiple ankyrin repeat domains 3 acts_upstream_of_or_within ISO (PMID:21558424) MGI PMID:21558424 NCBI chr 5:41,376...93,033
Ensembl chr 5:41,786...93,177 		JBrowse link
G SHISA6 shisa family member 6 involved_in ISO (PMID:26931375) UniProt PMID:26931375 NCBI chr12:55,757,837...56,024,760 JBrowse link
G SHISA7 shisa family member 7 involved_in
NOT|involved_in		 IEA
ISO		 (PMID:31601770) Ensembl
UniProt		 PMID:31601770 GO_REF:0000107 NCBI chr 6:59,582,706...59,601,979
Ensembl chr 6:59,582,708...59,601,885 		JBrowse link
G SLC7A11 solute carrier family 7 member 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:88,608,083...88,690,589
Ensembl chr 8:88,608,174...88,687,250 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18944
    localization 5419
      cellular localization 3546
        localization within membrane 761
          protein localization to membrane 668
            receptor clustering 81
              neurotransmitter-gated ion channel clustering 21
                NMDA glutamate receptor clustering 6
                gamma-aminobutyric acid receptor clustering 5
                glutamate receptor clustering + 14
                glycine receptor clustering 1
Path 2
Term Annotations click to browse term
  biological_process 18944
    localization 5419
      macromolecule localization 3045
        cellular macromolecule localization 2603
          protein localization 2591
            protein localization to membrane 668
              receptor clustering 81
                neurotransmitter-gated ion channel clustering 21
                  NMDA glutamate receptor clustering 6
                  gamma-aminobutyric acid receptor clustering 5
                  glutamate receptor clustering + 14
                  glycine receptor clustering 1
paths to the root