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ONTOLOGY REPORT - ANNOTATIONS

Term:neurotransmitter-gated ion channel clustering
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Accession:GO:0072578 term browser browse the term
Definition:The receptor clustering process in which neurotransmitter-gated ion channels are localized to distinct domains in the cell membrane.

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neurotransmitter-gated ion channel clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrtm4 leucine rich repeat transmembrane neuronal 4 acts_upstream_of_or_within ISO (PMID:23911104) MGI PMID:23911104 NCBI chrNW_004624749:25,669,342...26,445,401
Ensembl chrNW_004624749:25,669,348...26,444,401 		JBrowse link
G Nlgn2 neuroligin 2 acts_upstream_of_or_within ISO (PMID:29107521) MGI PMID:29107521 NCBI chrNW_004624786:10,019,307...10,034,624
Ensembl chrNW_004624786:10,022,717...10,034,624 		JBrowse link
G Slitrk3 SLIT and NTRK like family member 3 acts_upstream_of_or_within ISO (PMID:29107521) MGI PMID:29107521 NCBI chrNW_004624730:43,175,690...43,191,689
Ensembl chrNW_004624730:43,181,820...43,191,531 		JBrowse link
AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E acts_upstream_of_or_within_positive_effect ISO (PMID:24328732) Alzheimers_University_of_Toronto PMID:24328732 NCBI chrNW_004624907:1,752,322...1,755,308 JBrowse link
G Chrdl1 chordin like 1 involved_in ISO (PMID:30344043) MGI PMID:30344043 NCBI chrNW_004624803:5,011,132...5,144,899
Ensembl chrNW_004624803:5,010,746...5,144,989 		JBrowse link
G Dlg4 discs large MAGUK scaffold protein 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624786:9,811,201...9,835,660
Ensembl chrNW_004624786:9,811,780...9,837,100 		JBrowse link
G Lrrtm4 leucine rich repeat transmembrane neuronal 4 acts_upstream_of_or_within ISO (PMID:23911104) MGI PMID:23911104 NCBI chrNW_004624749:25,669,342...26,445,401
Ensembl chrNW_004624749:25,669,348...26,444,401 		JBrowse link
G Nlgn1 neuroligin 1 involved_in ISO PMID:21940442
(PMID:21940442)
(PMID:12796785)		 BHF-UCL
CACAO		 PMID:12796785 PMID:21940442 RGD:8553843 NCBI chrNW_004624730:51,451,546...52,300,413
Ensembl chrNW_004624730:51,650,815...52,295,023 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in ISO (PMID:21558424), (PMID:21795692) CACAO PMID:21558424 PMID:21795692 NCBI chrNW_004624752:72,545...127,321
Ensembl chrNW_004624752:72,615...127,325 		JBrowse link
gamma-aminobutyric acid receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Glrb glycine receptor beta acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624848:1,301,051...1,383,931
Ensembl chrNW_004624848:1,298,174...1,384,513 		JBrowse link
G Gphn gephyrin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19723286) TreeGrafter
MGI		 PMID:19723286 GO_REF:0000118 NCBI chrNW_004624734:33,871,664...34,483,770
Ensembl chrNW_004624734:33,870,997...34,483,508 		JBrowse link
G Lhfpl4 LHFPL tetraspan subfamily member 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:4,194,321...4,222,400
Ensembl chrNW_004624731:4,194,321...4,222,105 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (PMID:15620359) BHF-UCL PMID:15620359 NCBI chrNW_004624738:31,134,551...32,273,596
Ensembl chrNW_004624738:31,133,346...32,273,565 		JBrowse link
G Shisa7 shisa family member 7 involved_in ISO (PMID:31601770) UniProt PMID:31601770 NCBI chrNW_004624832:1,898,049...1,909,155
Ensembl chrNW_004624832:1,900,580...1,909,125 		JBrowse link
glycine receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gphn gephyrin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9812897) MGI
TreeGrafter		 PMID:9812897 GO_REF:0000118 NCBI chrNW_004624734:33,871,664...34,483,770
Ensembl chrNW_004624734:33,870,997...34,483,508 		JBrowse link
NMDA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E acts_upstream_of_or_within_positive_effect ISO (PMID:24328732) Alzheimers_University_of_Toronto PMID:24328732 NCBI chrNW_004624907:1,752,322...1,755,308 JBrowse link
G Htr1a 5-hydroxytryptamine receptor 1A ISO RGD PMID:18442977 RGD:7241017 NCBI chrNW_004624815:5,817,196...5,821,197
Ensembl chrNW_004624815:5,816,601...5,820,864 		JBrowse link
G Nlgn1 neuroligin 1 involved_in ISO PMID:19450252
(PMID:23143522)		 BHF-UCL PMID:19450252 PMID:23143522 RGD:8553605 NCBI chrNW_004624730:51,451,546...52,300,413
Ensembl chrNW_004624730:51,650,815...52,295,023 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (PMID:15620359) BHF-UCL PMID:15620359 NCBI chrNW_004624738:31,134,551...32,273,596
Ensembl chrNW_004624738:31,133,346...32,273,565 		JBrowse link
G Reln reelin involved_in ISO (PMID:21664258) CACAO PMID:21664258 NCBI chrNW_004624739:25,472,626...25,918,064
Ensembl chrNW_004624739:25,472,561...25,918,167 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in ISO (PMID:21558424) CACAO PMID:21558424 NCBI chrNW_004624752:72,545...127,321
Ensembl chrNW_004624752:72,615...127,325 		JBrowse link
positive regulation of AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlg4 discs large MAGUK scaffold protein 4 involved_in ISO PMID:19596852 UniProt PMID:19596852 RGD:21201259 NCBI chrNW_004624786:9,811,201...9,835,660
Ensembl chrNW_004624786:9,811,780...9,837,100 		JBrowse link
G Grip2 glutamate receptor interacting protein 2 involved_in ISO PMID:20083202 UniProt PMID:20083202 RGD:4107359 NCBI chrNW_004624872:1,215,698...1,264,723
Ensembl chrNW_004624872:1,233,797...1,264,722 		JBrowse link
G Snx27 sorting nexin 27 ISO RGD PMID:25071192 RGD:13508620 NCBI chrNW_004624772:19,305,355...19,385,298
Ensembl chrNW_004624772:19,305,359...19,385,292 		JBrowse link
G Ssh1 slingshot protein phosphatase 1 ISO RGD PMID:20442266 RGD:11535133 NCBI chrNW_004624747:12,017,371...12,081,452
Ensembl chrNW_004624747:12,019,702...12,081,354 		JBrowse link
G Zdhhc2 zDHHC palmitoyltransferase 2 involved_in ISO PMID:19596852 UniProt PMID:19596852 RGD:21201259 NCBI chrNW_004624769:22,078,361...22,151,679
Ensembl chrNW_004624769:22,080,073...22,151,626 		JBrowse link
regulation of AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frrs1l ferric chelate reductase 1 like acts_upstream_of_or_within ISO (PMID:29276473) MGI PMID:29276473 NCBI chrNW_004624758:2,365,246...2,392,699
Ensembl chrNW_004624758:2,365,096...2,387,735 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 acts_upstream_of_or_within ISO (PMID:21558424) MGI PMID:21558424 NCBI chrNW_004624752:72,545...127,321
Ensembl chrNW_004624752:72,615...127,325 		JBrowse link
G Shisa6 shisa family member 6 involved_in ISO (PMID:26931375) UniProt PMID:26931375 NCBI chrNW_004624786:13,697,178...14,007,891
Ensembl chrNW_004624786:13,697,330...14,001,891 		JBrowse link
G Shisa7 shisa family member 7 NOT|involved_in ISO (PMID:31601770)
(PMID:29199957)		 UniProt PMID:29199957 PMID:31601770 NCBI chrNW_004624832:1,898,049...1,909,155
Ensembl chrNW_004624832:1,900,580...1,909,125 		JBrowse link
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO (PMID:25429150) MGI PMID:25429150 NCBI chrNW_004624777:18,540,006...18,619,881
Ensembl chrNW_004624777:18,546,799...18,619,947 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17650
    localization 5204
      cellular localization 3437
        localization within membrane 762
          protein localization to membrane 669
            receptor clustering 83
              neurotransmitter-gated ion channel clustering 22
                NMDA glutamate receptor clustering 6
                gamma-aminobutyric acid receptor clustering 5
                glutamate receptor clustering + 14
                glycine receptor clustering 1
Path 2
Term Annotations click to browse term
  biological_process 17650
    localization 5204
      macromolecule localization 2907
        cellular macromolecule localization 2515
          protein localization 2503
            protein localization to membrane 669
              receptor clustering 83
                neurotransmitter-gated ion channel clustering 22
                  NMDA glutamate receptor clustering 6
                  gamma-aminobutyric acid receptor clustering 5
                  glutamate receptor clustering + 14
                  glycine receptor clustering 1
paths to the root