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ONTOLOGY REPORT - ANNOTATIONS

Term:neurotransmitter-gated ion channel clustering
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Accession:GO:0072578 term browser browse the term
Definition:The receptor clustering process in which neurotransmitter-gated ion channels are localized to distinct domains in the cell membrane.


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neurotransmitter-gated ion channel clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrtm4 leucine rich repeat transmembrane neuronal 4 acts_upstream_of_or_within IDA (PMID:23911104) MGI PMID:23911104 NCBI chr 6:79,995,828...80,787,143
Ensembl chr 6:79,995,860...80,787,124 		JBrowse link
G Nlgn2 neuroligin 2 acts_upstream_of_or_within IMP
IGI
IDA		 (PMID:29107521) MGI PMID:29107521 NCBI chr11:69,713,949...69,728,610
Ensembl chr11:69,713,948...69,728,610 		JBrowse link
G Slitrk3 SLIT and NTRK-like family, member 3 acts_upstream_of_or_within IGI
IDA
IMP		 (PMID:29107521) MGI PMID:29107521 NCBI chr 3:72,954,399...72,965,298
Ensembl chr 3:72,954,598...72,965,136 		JBrowse link
AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E acts_upstream_of_or_within_positive_effect ISO GO_Central GO_REF:0000119 NCBI chr 7:19,430,169...19,434,326
Ensembl chr 7:19,430,034...19,433,113 		JBrowse link
G Chrdl1 chordin-like 1 involved_in IMP (PMID:30344043) MGI PMID:30344043 NCBI chr  X:142,068,670...142,177,282
Ensembl chr  X:142,068,670...142,177,258 		JBrowse link
G Dlg4 discs large MAGUK scaffold protein 4 involved_in IBA
ISS
ISO		 GO_Central
BHF-UCL		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000096 NCBI chr11:69,908,029...69,938,107
Ensembl chr11:69,907,768...69,938,348 		JBrowse link
G Lrrtm4 leucine rich repeat transmembrane neuronal 4 acts_upstream_of_or_within IMP (PMID:23911104) MGI PMID:23911104 NCBI chr 6:79,995,828...80,787,143
Ensembl chr 6:79,995,860...80,787,124 		JBrowse link
G Nlgn1 neuroligin 1 involved_in ISO
IMP
IDA		 (PMID:21940442)
(PMID:12796785)		 GO_Central
CACAO
BHF-UCL		 PMID:12796785 PMID:21940442 GO_REF:0000096 NCBI chr 3:25,475,972...26,387,504
Ensembl chr 3:25,480,379...26,386,609 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in IMP (PMID:21558424), (PMID:21795692) CACAO PMID:21558424 PMID:21795692 NCBI chr15:89,376,929...89,444,464
Ensembl chr15:89,383,826...89,444,464 		JBrowse link
gamma-aminobutyric acid receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Glrb glycine receptor, beta subunit acts_upstream_of_or_within IGI (PMID:19723286) MGI PMID:19723286 NCBI chr 3:80,750,905...80,820,994
Ensembl chr 3:80,750,906...80,820,967 		JBrowse link
G Gphn gephyrin acts_upstream_of_or_within
involved_in		 IGI
IBA
ISS
ISO		 (PMID:19723286) MGI
GO_Central
UniProt		 PMID:19723286 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr12:78,264,099...78,731,546
Ensembl chr12:78,273,153...78,731,546 		JBrowse link
G Lhfpl4 lipoma HMGIC fusion partner-like protein 4 involved_in IBA
IMP		 (PMID:28279354), (PMID:28978485) GO_Central
UniProt		 PMID:28279354 PMID:28978485 GO_REF:0000033 NCBI chr 6:113,145,048...113,172,345
Ensembl chr 6:113,145,051...113,172,345 		JBrowse link
G Nrxn1 neurexin I involved_in IDA (PMID:15620359) BHF-UCL PMID:15620359 NCBI chr17:90,341,072...91,400,587
Ensembl chr17:90,341,059...91,400,499 		JBrowse link
G Shisa7 shisa family member 7 involved_in IBA
IDA		 (PMID:31601770) GO_Central
UniProt		 PMID:31601770 GO_REF:0000033 NCBI chr 7:4,828,551...4,847,788
Ensembl chr 7:4,828,551...4,847,695 		JBrowse link
glycine receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gphn gephyrin acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:9812897) MGI
GO_Central		 PMID:9812897 GO_REF:0000033 NCBI chr12:78,264,099...78,731,546
Ensembl chr12:78,273,153...78,731,546 		JBrowse link
NMDA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E acts_upstream_of_or_within_positive_effect ISO GO_Central GO_REF:0000119 NCBI chr 7:19,430,169...19,434,326
Ensembl chr 7:19,430,034...19,433,113 		JBrowse link
G Htr1a 5-hydroxytryptamine (serotonin) receptor 1A involved_in ISO RGD
GO_Central		 PMID:18442977 GO_REF:0000096 RGD:7241017 NCBI chr13:105,580,040...105,584,630
Ensembl chr13:105,580,147...105,584,630 		JBrowse link
G Nlgn1 neuroligin 1 involved_in ISO
ISS		 GO_Central
BHF-UCL		 GO_REF:0000024 GO_REF:0000096 NCBI chr 3:25,475,972...26,387,504
Ensembl chr 3:25,480,379...26,386,609 		JBrowse link
G Nrxn1 neurexin I involved_in IDA (PMID:15620359) BHF-UCL PMID:15620359 NCBI chr17:90,341,072...91,400,587
Ensembl chr17:90,341,059...91,400,499 		JBrowse link
G Reln reelin involved_in IMP (PMID:21664258) CACAO PMID:21664258 NCBI chr 5:22,089,452...22,549,703
Ensembl chr 5:22,089,452...22,549,700 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in IMP (PMID:21558424) CACAO PMID:21558424 NCBI chr15:89,376,929...89,444,464
Ensembl chr15:89,383,826...89,444,464 		JBrowse link
positive regulation of AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlg4 discs large MAGUK scaffold protein 4 involved_in ISO GO_Central GO_REF:0000096 NCBI chr11:69,908,029...69,938,107
Ensembl chr11:69,907,768...69,938,348 		JBrowse link
G Grip2 glutamate receptor interacting protein 2 involved_in ISO GO_Central GO_REF:0000096 NCBI chr 6:91,738,433...91,820,884
Ensembl chr 6:91,738,490...91,804,231 		JBrowse link
G Snx27 sorting nexin family member 27 involved_in ISO RGD
GO_Central		 PMID:25071192 GO_REF:0000096 RGD:13508620 NCBI chr 3:94,404,849...94,490,023
Ensembl chr 3:94,404,851...94,490,023 		JBrowse link
G Ssh1 slingshot protein phosphatase 1 involved_in ISO
IEA		 RGD
GO_Central
Ensembl		 PMID:20442266 GO_REF:0000096 GO_REF:0000107 RGD:11535133 NCBI chr 5:114,075,155...114,131,864
Ensembl chr 5:114,075,155...114,131,955 		JBrowse link
G Zdhhc2 zinc finger, DHHC domain containing 2 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000096 NCBI chr 8:40,876,526...40,946,178
Ensembl chr 8:40,876,856...40,963,309 		JBrowse link
regulation of AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frrs1l ferric-chelate reductase 1 like acts_upstream_of_or_within IMP (PMID:29276473) MGI PMID:29276473 NCBI chr 4:56,957,173...56,990,408
Ensembl chr 4:56,957,173...56,990,391 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 acts_upstream_of_or_within IMP (PMID:21558424) MGI PMID:21558424 NCBI chr15:89,376,929...89,444,464
Ensembl chr15:89,383,826...89,444,464 		JBrowse link
G Shisa6 shisa family member 6 involved_in IMP (PMID:26931375) UniProt PMID:26931375 NCBI chr11:66,102,551...66,418,715
Ensembl chr11:66,102,551...66,416,790 		JBrowse link
G Shisa7 shisa family member 7 NOT|involved_in IDA
IMP		 (PMID:31601770)
(PMID:29199957)		 UniProt PMID:29199957 PMID:31601770 NCBI chr 7:4,828,551...4,847,788
Ensembl chr 7:4,828,551...4,847,695 		JBrowse link
G Slc7a11 solute carrier family 7 (cationic amino acid transporter, y+ system), member 11 acts_upstream_of_or_within IMP (PMID:25429150) MGI PMID:25429150 NCBI chr 3:50,319,385...50,403,947
Ensembl chr 3:49,846,975...50,398,063 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28630
    localization 5656
      cellular localization 3736
        localization within membrane 772
          protein localization to membrane 677
            receptor clustering 82
              neurotransmitter-gated ion channel clustering 22
                NMDA glutamate receptor clustering 6
                gamma-aminobutyric acid receptor clustering 5
                glutamate receptor clustering + 14
                glycine receptor clustering 1
Path 2
Term Annotations click to browse term
  biological_process 28630
    localization 5656
      macromolecule localization 3254
        cellular macromolecule localization 2778
          protein localization 2766
            protein localization to membrane 677
              receptor clustering 82
                neurotransmitter-gated ion channel clustering 22
                  NMDA glutamate receptor clustering 6
                  gamma-aminobutyric acid receptor clustering 5
                  glutamate receptor clustering + 14
                  glycine receptor clustering 1
paths to the root