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ONTOLOGY REPORT - ANNOTATIONS

Term:neurotransmitter-gated ion channel clustering
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Accession:GO:0072578 term browser browse the term
Definition:The receptor clustering process in which neurotransmitter-gated ion channels are localized to distinct domains in the cell membrane.

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neurotransmitter-gated ion channel clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrtm4 leucine rich repeat transmembrane neuronal 4 acts_upstream_of_or_within ISO (PMID:23911104) MGI PMID:23911104 NCBI chrNW_004955424:8,606,660...9,277,125
Ensembl chrNW_004955424:8,606,089...9,276,104 		JBrowse link
G Nlgn2 neuroligin 2 acts_upstream_of_or_within ISO (PMID:29107521) MGI PMID:29107521 NCBI chrNW_004955467:9,504,974...9,520,059
Ensembl chrNW_004955467:9,504,974...9,520,059 		JBrowse link
G Slitrk3 SLIT and NTRK like family member 3 acts_upstream_of_or_within ISO (PMID:29107521) MGI PMID:29107521 NCBI chrNW_004955448:14,846,976...14,852,612
Ensembl chrNW_004955448:14,846,976...14,852,612 		JBrowse link
AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E acts_upstream_of_or_within_positive_effect ISO (PMID:24328732) Alzheimers_University_of_Toronto PMID:24328732 NCBI chrNW_004955555:1,998,170...2,002,003
Ensembl chrNW_004955555:1,999,711...2,001,888 		JBrowse link
G Chrdl1 chordin like 1 involved_in ISO (PMID:30344043) MGI PMID:30344043 NCBI chrNW_004955490:5,108,308...5,218,679
Ensembl chrNW_004955490:5,108,308...5,257,445 		JBrowse link
G Dlg4 discs large MAGUK scaffold protein 4 involved_in ISO PMID:21525273 BHF-UCL PMID:21525273 RGD:8554095 NCBI chrNW_004955467:9,691,733...9,715,872
Ensembl chrNW_004955467:9,690,469...9,715,872 		JBrowse link
G Lrrtm4 leucine rich repeat transmembrane neuronal 4 acts_upstream_of_or_within ISO (PMID:23911104) MGI PMID:23911104 NCBI chrNW_004955424:8,606,660...9,277,125
Ensembl chrNW_004955424:8,606,089...9,276,104 		JBrowse link
G Nlgn1 neuroligin 1 involved_in ISO PMID:21940442
(PMID:21940442)
(PMID:12796785)		 BHF-UCL
CACAO		 PMID:12796785 PMID:21940442 RGD:8553843 NCBI chrNW_004955420:3,360,745...4,171,587
Ensembl chrNW_004955420:3,549,021...4,167,493 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in ISO (PMID:21558424), (PMID:21795692) CACAO PMID:21558424 PMID:21795692 NCBI chrNW_004955413:33,660,025...33,714,649
Ensembl chrNW_004955413:33,660,022...33,712,796 		JBrowse link
gamma-aminobutyric acid receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Glrb glycine receptor beta acts_upstream_of_or_within ISO (PMID:19723286) MGI PMID:19723286 NCBI chrNW_004955471:10,153,197...10,238,052
Ensembl chrNW_004955471:10,152,156...10,238,832 		JBrowse link
G Gphn gephyrin involved_in
acts_upstream_of_or_within		 ISO (PMID:26613940)
(PMID:19723286)
(PMID:25025157)		 UniProt
MGI		 PMID:19723286 PMID:25025157 PMID:26613940 NCBI chrNW_004955466:3,017,474...3,526,375
Ensembl chrNW_004955466:3,016,479...3,526,231 		JBrowse link
G Lhfpl4 LHFPL tetraspan subfamily member 4 involved_in ISO (PMID:28279354), (PMID:28978485) UniProt PMID:28279354 PMID:28978485 NCBI chrNW_004955561:1,066,799...1,142,099
Ensembl chrNW_004955561:1,066,799...1,142,099 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (PMID:15620359) BHF-UCL PMID:15620359 NCBI chrNW_004955441:16,230,977...17,178,003
Ensembl chrNW_004955441:16,234,070...17,178,005 		JBrowse link
G Shisa7 shisa family member 7 involved_in ISO (PMID:31601770) UniProt PMID:31601770 NCBI chrNW_004955567:840,193...845,093 JBrowse link
glycine receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gphn gephyrin acts_upstream_of_or_within ISO (PMID:9812897) MGI PMID:9812897 NCBI chrNW_004955466:3,017,474...3,526,375
Ensembl chrNW_004955466:3,016,479...3,526,231 		JBrowse link
NMDA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E acts_upstream_of_or_within_positive_effect ISO (PMID:24328732) Alzheimers_University_of_Toronto PMID:24328732 NCBI chrNW_004955555:1,998,170...2,002,003
Ensembl chrNW_004955555:1,999,711...2,001,888 		JBrowse link
G Htr1a 5-hydroxytryptamine receptor 1A ISO RGD PMID:18442977 RGD:7241017 NCBI chrNW_004955446:4,913,181...4,917,726
Ensembl chrNW_004955446:4,913,884...4,915,146 		JBrowse link
G Nlgn1 neuroligin 1 involved_in ISO PMID:19450252
(PMID:23143522)		 BHF-UCL PMID:19450252 PMID:23143522 RGD:8553605 NCBI chrNW_004955420:3,360,745...4,171,587
Ensembl chrNW_004955420:3,549,021...4,167,493 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (PMID:15620359) BHF-UCL PMID:15620359 NCBI chrNW_004955441:16,230,977...17,178,003
Ensembl chrNW_004955441:16,234,070...17,178,005 		JBrowse link
G Reln reelin involved_in ISO (PMID:21664258) CACAO PMID:21664258 NCBI chrNW_004955410:8,424,439...8,863,966
Ensembl chrNW_004955410:8,424,394...8,863,969 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in ISO (PMID:21558424) CACAO PMID:21558424 NCBI chrNW_004955413:33,660,025...33,714,649
Ensembl chrNW_004955413:33,660,022...33,712,796 		JBrowse link
positive regulation of AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlg4 discs large MAGUK scaffold protein 4 involved_in ISO PMID:19596852 UniProt PMID:19596852 RGD:21201259 NCBI chrNW_004955467:9,691,733...9,715,872
Ensembl chrNW_004955467:9,690,469...9,715,872 		JBrowse link
G Grip2 glutamate receptor interacting protein 2 involved_in ISO PMID:20083202 UniProt PMID:20083202 RGD:4107359 NCBI chrNW_004955429:17,132,520...17,177,547
Ensembl chrNW_004955429:17,134,158...17,160,036 		JBrowse link
G Snx27 sorting nexin 27 ISO RGD PMID:25071192 RGD:13508620 NCBI chrNW_004955589:719,892...799,367
Ensembl chrNW_004955589:719,898...799,366 		JBrowse link
G Ssh1 slingshot protein phosphatase 1 ISO RGD PMID:20442266 RGD:11535133 NCBI chrNW_004955455:10,019,992...10,077,485
Ensembl chrNW_004955455:10,020,465...10,053,476 		JBrowse link
G Zdhhc2 zDHHC palmitoyltransferase 2 involved_in ISO PMID:19596852 UniProt PMID:19596852 RGD:21201259 NCBI chrNW_004955463:315,531...345,712
Ensembl chrNW_004955463:315,531...345,716 		JBrowse link
regulation of AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frrs1l ferric chelate reductase 1 like acts_upstream_of_or_within ISO (PMID:29276473) MGI PMID:29276473 NCBI chrNW_004955419:17,825,868...17,848,868
Ensembl chrNW_004955419:17,825,868...17,848,868 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 acts_upstream_of_or_within ISO (PMID:21558424) MGI PMID:21558424 NCBI chrNW_004955413:33,660,025...33,714,649
Ensembl chrNW_004955413:33,660,022...33,712,796 		JBrowse link
G Shisa6 shisa family member 6 involved_in ISO (PMID:26931375) UniProt PMID:26931375 NCBI chrNW_004955467:5,701,521...5,998,910
Ensembl chrNW_004955467:5,707,561...5,998,910 		JBrowse link
G Shisa7 shisa family member 7 NOT|involved_in ISO (PMID:31601770)
(PMID:29199957)		 UniProt PMID:29199957 PMID:31601770 NCBI chrNW_004955567:840,193...845,093 JBrowse link
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO (PMID:25429150) MGI PMID:25429150 NCBI chrNW_004955428:5,238,460...5,309,085
Ensembl chrNW_004955428:5,237,865...5,309,085 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12619
    localization 4344
      cellular localization 3005
        localization within membrane 652
          protein localization to membrane 581
            receptor clustering 76
              neurotransmitter-gated ion channel clustering 22
                NMDA glutamate receptor clustering 6
                gamma-aminobutyric acid receptor clustering 5
                glutamate receptor clustering + 14
                glycine receptor clustering 1
Path 2
Term Annotations click to browse term
  biological_process 12619
    localization 4344
      macromolecule localization 2418
        cellular macromolecule localization 2124
          protein localization 2111
            protein localization to membrane 581
              receptor clustering 76
                neurotransmitter-gated ion channel clustering 22
                  NMDA glutamate receptor clustering 6
                  gamma-aminobutyric acid receptor clustering 5
                  glutamate receptor clustering + 14
                  glycine receptor clustering 1
paths to the root