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ONTOLOGY REPORT - ANNOTATIONS


Term:liver morphogenesis
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Accession:GO:0072576 term browser browse the term
Definition:The process in which the anatomical structures of the liver are generated and organized.


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liver morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul3 cullin 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3714267 (MGI:3713609|PMID:17339333)
Ensembl
RGD
PMID:17339333 GO_REF:0000107 MGI:3713609 NCBI chr 9:81,592,641...81,670,428
Ensembl chr 9:81,592,641...81,670,462
JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within ISO MGI:3617328 (MGI:5616947|PMID:25446530) RGD PMID:25446530 MGI:5616947 NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 acts_upstream_of_or_within ISO MGI:5301343 (MGI:5298314|PMID:21803851) RGD PMID:21803851 MGI:5298314 NCBI chr 2:221,988,645...222,072,813
Ensembl chr 2:221,988,645...222,072,534
JBrowse link
hepatocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cebpb CCAAT/enhancer binding protein beta involved_in IDA
ISO
PMID:10635333
(MGI:3778721|PMID:10635333)
RGD PMID:10635333 PMID:10635333 MGI:3778721, RGD:10047310 NCBI chr 3:156,398,035...156,399,466
Ensembl chr 3:156,397,052...156,399,473
JBrowse link
G Fgl1 fibrinogen-like 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:19880967)
UniProt
RGD
PMID:19880967 GO_REF:0000024 NCBI chr16:51,120,652...51,150,907
Ensembl chr16:51,120,694...51,151,093
JBrowse link
G Il6 interleukin 6 involved_in ISS
ISO
GO_REF:0000024
(MGI:84432|PMID:8910279)
UniProt
RGD
PMID:8910279 GO_REF:0000024 MGI:84432 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
JBrowse link
G Mki67 marker of proliferation Ki-67 acts_upstream_of_or_within ISO (MGI:5616947|PMID:25446530) RGD PMID:25446530 MGI:5616947 NCBI chr 1:190,496,319...190,522,983
Ensembl chr 1:190,496,319...190,522,762
JBrowse link
G Notch2 notch receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3617328 (MGI:5616947|PMID:25446530)
Ensembl
RGD
PMID:25446530 GO_REF:0000107 MGI:5616947 NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088
JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 IEP RGD PMID:29138817 RGD:15042871 NCBI chr 7:23,846,122...23,942,085
Ensembl chr 7:23,846,122...23,942,047
JBrowse link
G Prox1 prospero homeobox 1 acts_upstream_of_or_within ISO MGI:2386336 (MGI:1860507|PMID:10888866) RGD PMID:10888866 MGI:1860507 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
JBrowse link
G Rps6ka1 ribosomal protein S6 kinase A1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3778721|PMID:10635333)
UniProt
RGD
PMID:10635333 GO_REF:0000024 MGI:3778721 NCBI chr 5:146,079,018...146,118,272
Ensembl chr 5:146,079,021...146,118,272
JBrowse link
G Tgfa transforming growth factor alpha involved_in IDA
ISO
PMID:10635333
(MGI:3778721|PMID:10635333)
RGD PMID:10635333 PMID:10635333 MGI:3778721, RGD:10047310 NCBI chr 4:118,618,043...118,700,897
Ensembl chr 4:118,618,269...118,700,894
JBrowse link
negative regulation of hepatocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn2a cyclin-dependent kinase inhibitor 2A IMP RGD PMID:24190239 RGD:11252157 NCBI chr 5:103,984,949...103,992,143
Ensembl chr 5:103,984,949...104,003,149
JBrowse link
G Ceacam1 CEA cell adhesion molecule 1 involved_in IMP
ISO
ISS
PMID:15467833
(MGI:3057041|PMID:15467833)
GO_REF:0000024
RGD
UniProt
PMID:15467833 PMID:15467833 GO_REF:0000024 MGI:3057041, RGD:11059592 NCBI chr 1:81,043,595...81,060,050
Ensembl chr 1:81,043,595...81,059,992
JBrowse link
G Cpb2 carboxypeptidase B2 IMP RGD PMID:19386599 RGD:7243112 NCBI chr15:50,557,722...50,606,569
Ensembl chr15:50,557,717...50,606,556
JBrowse link
G Lims1 LIM zinc finger domain containing 1 acts_upstream_of_or_within ISO MGI:2385067 (MGI:5559100|PMID:24058607) RGD PMID:24058607 MGI:5559100 NCBI chr20:26,309,833...26,418,511
Ensembl chr20:26,309,895...26,418,500
JBrowse link
G Lims2 LIM zinc finger domain containing 2 acts_upstream_of_or_within ISO MGI:1195263 (MGI:5559100|PMID:24058607) RGD PMID:24058607 MGI:5559100 NCBI chr18:23,553,813...23,592,137
Ensembl chr18:23,553,937...23,592,137
JBrowse link
positive regulation of hepatocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cflar CASP8 and FADD-like apoptosis regulator IMP RGD PMID:16033771 RGD:11341689 NCBI chr 9:60,185,338...60,236,173
Ensembl chr 9:60,185,452...60,237,034
JBrowse link
G Fgf1 fibroblast growth factor 1 involved_in IDA PMID:16756958 UniProt PMID:16756958 RGD:10047366 NCBI chr18:30,686,555...30,772,667
Ensembl chr18:30,686,581...30,772,357
JBrowse link
G Fgf18 fibroblast growth factor 18 involved_in IDA PMID:16756958 UniProt PMID:16756958 RGD:10047366 NCBI chr10:17,706,011...17,737,702
Ensembl chr10:17,706,174...17,736,818
JBrowse link
G Hpn hepsin involved_in ISO
IEA
ISS
(PMID:15614436)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:15614436 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:86,337,085...86,352,785
Ensembl chr 1:86,337,087...86,352,811
JBrowse link
G Il18 interleukin 18 IDA RGD PMID:24412291 RGD:14696652 NCBI chr 8:50,904,630...50,932,887
Ensembl chr 8:50,906,960...50,932,887
JBrowse link
G Itpr1 inositol 1,4,5-trisphosphate receptor, type 1 IMP RGD PMID:24814243 RGD:13793384 NCBI chr 4:141,187,377...141,554,240
Ensembl chr 4:141,187,418...141,510,491
JBrowse link
G Mdk midkine involved_in ISS
ISO
GO_REF:0000024
(MGI:3606557|PMID:15482347)
UniProt
RGD
PMID:15482347 GO_REF:0000024 MGI:3606557 NCBI chr 3:77,901,156...77,903,997
Ensembl chr 3:77,901,158...77,903,130
JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO MGI:2176946|MGI:3511276 (MGI:3719773|PMID:17438330) RGD PMID:17438330 MGI:3719773 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
JBrowse link
G Ptn pleiotrophin involved_in IDA
ISO
(MGI:3606557|PMID:15482347) RGD PMID:15482347 PMID:16226713 MGI:3606557, RGD:9834996 NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456
JBrowse link
G Rtn4 reticulon 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:6282933|PMID:23299899)
UniProt
RGD
PMID:23299899 GO_REF:0000024 MGI:6282933 NCBI chr14:103,450,074...103,497,687
Ensembl chr14:103,449,930...103,497,686
JBrowse link
G Tnf tumor necrosis factor IMP
IDA
with PCB 126 or TCDD RGD PMID:9111198 PMID:17557910 RGD:14995469, RGD:14995481 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
JBrowse link
G Tnfaip3 TNF alpha induced protein 3 involved_in ISO (MGI:4943408|PMID:15962316) RGD PMID:15962316 MGI:4943408 NCBI chr 1:13,709,211...13,724,291
Ensembl chr 1:13,709,206...13,725,282
JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (MGI:5515698|PMID:23740243) RGD PMID:23740243 MGI:5515698 NCBI chr10:44,034,174...44,078,463
Ensembl chr10:44,034,194...44,078,324
JBrowse link
G Xbp1 X-box binding protein 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:1352298|PMID:10652269)
UniProt
RGD
PMID:10652269 GO_REF:0000024 MGI:1352298 NCBI chr14:80,390,629...80,395,713
Ensembl chr14:80,390,643...80,395,693
JBrowse link
regulation of hepatocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO (MGI:5515698|PMID:23740243) RGD PMID:23740243 MGI:5515698 NCBI chr 7:63,156,926...63,169,579
Ensembl chr 7:63,156,926...63,169,251
JBrowse link
G Ifng interferon gamma IDA RGD PMID:15799032 RGD:8142374 NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375
JBrowse link
G Plau plasminogen activator, urokinase IMP RGD PMID:17587687 RGD:6484147 NCBI chr15:3,456,230...3,462,732
Ensembl chr15:3,456,232...3,462,775
JBrowse link
G Sulf2 sulfatase 2 acts_upstream_of_or_within ISO MGI:3587954 (MGI:5515698|PMID:23740243) RGD PMID:23740243 MGI:5515698 NCBI chr 3:154,822,079...154,904,566
Ensembl chr 3:154,822,085...154,904,415
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19492
    developmental process 6770
      anatomical structure morphogenesis 2888
        animal organ morphogenesis 1159
          gland morphogenesis 168
            liver morphogenesis 34
              epithelial cell proliferation involved in liver morphogenesis + 32
Path 2
Term Annotations click to browse term
  biological_process 19492
    developmental process 6770
      anatomical structure development 6196
        multicellular organism development 5633
          system development 5301
            animal organ development 4061
              gland development 665
                liver development 263
                  liver morphogenesis 34
                    epithelial cell proliferation involved in liver morphogenesis + 32
paths to the root