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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine-containing compound catabolic process
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Accession:GO:0072529 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof.
Synonyms:exact_synonym: pyrimidine and derivative catabolic process;   pyrimidine-containing compound breakdown;   pyrimidine-containing compound catabolism;   pyrimidine-containing compound degradation


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5-methylcytosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TET1 tet methylcytosine dioxygenase 1 IEA UniProt GO_REF:0000104 NCBI chr14:71,675,671...71,812,732
Ensembl chr14:71,675,671...71,815,621
JBrowse link
G TET2 tet methylcytosine dioxygenase 2 IEA UniProt GO_REF:0000104 NCBI chr 8:116,413,253...116,546,976
Ensembl chr 8:116,415,267...116,545,299
JBrowse link
G TET3 tet methylcytosine dioxygenase 3 IEA UniProt GO_REF:0000104 NCBI chr 3:68,918,896...69,020,406
Ensembl chr 3:68,918,933...69,020,986
JBrowse link
cytidine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase IEA GOC
Ensembl
GO_REF:0000107, GO_REF:0000108 NCBI chr 5:62,777,236...62,787,342
Ensembl chr 5:62,777,352...62,787,483
JBrowse link
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 IEA GOC GO_REF:0000108 NCBI chr 5:62,811,819...62,820,532
Ensembl chr 5:62,810,879...62,820,173
JBrowse link
G APOBEC2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 IEA GOC GO_REF:0000108 NCBI chr 7:36,364,258...36,381,012
Ensembl chr 7:36,364,300...36,384,299
JBrowse link
G CDA cytidine deaminase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:78,824,248...78,849,154
Ensembl chr 6:78,824,284...78,879,462
JBrowse link
G CDADC1 cytidine and dCMP deaminase domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr11:18,467,508...18,518,137
Ensembl chr11:18,458,299...18,518,146
JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 IEA UniProt GO_REF:0000104 NCBI chr 3:17,896,426...17,900,562
Ensembl chr 3:17,886,895...17,900,563
JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 NOT ISO (PMID:24467396) UniProtKB PMID:24467396 NCBI chr 3:17,896,426...17,900,562
Ensembl chr 3:17,886,895...17,900,563
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5M 5',3'-nucleotidase, mitochondrial IEA Ensembl GO_REF:0000107 NCBI chr12:60,979,496...60,994,577
Ensembl chr12:60,979,499...60,994,582
JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr 1:123,451,207...123,462,267
Ensembl chr 1:123,451,212...123,462,232
JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:6,162,420...6,164,143
Ensembl chr12:6,139,439...6,164,142
JBrowse link
G NT5M 5',3'-nucleotidase, mitochondrial IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:60,979,496...60,994,577
Ensembl chr12:60,979,499...60,994,582
JBrowse link
pyrimidine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRMP1 collapsin response mediator protein 1 NOT IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:4,734,175...4,805,647
Ensembl chr 8:4,734,200...4,805,645
JBrowse link
G DPYD dihydropyrimidine dehydrogenase ISO (PMID:11988088)
(MGI:2657070|PMID:12651209)
UniProtKB
MGI
RGD
PMID:1629785, PMID:11988088, PMID:12651209 MGI:2657070, RGD:1599794 NCBI chr 4:119,931,471...120,712,461
Ensembl chr 4:119,931,458...120,712,462
JBrowse link
G DPYS dihydropyrimidinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:32,791,152...32,879,489
Ensembl chr 4:32,789,460...32,879,489
JBrowse link
G DPYSL2 dihydropyrimidinase like 2 NOT IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:10,428,598...10,545,705
Ensembl chr14:10,427,500...10,545,703
JBrowse link
G DPYSL3 dihydropyrimidinase like 3 NOT IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:148,663,563...148,777,055
Ensembl chr 2:148,662,050...148,776,619
JBrowse link
G DPYSL4 dihydropyrimidinase like 4 NOT IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:140,497,457...140,511,740
Ensembl chr14:140,497,457...140,515,833
JBrowse link
G DPYSL5 dihydropyrimidinase like 5 NOT IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:112,155,538...112,252,963
Ensembl chr 3:112,155,541...112,252,968
JBrowse link
pyrimidine nucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UPB1 beta-ureidopropionase 1 IEA Ensembl GO_REF:0000107 NCBI chr14:49,533,208...49,561,518
Ensembl chr14:49,533,226...49,565,100
JBrowse link
thymidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 4:119,931,471...120,712,461
Ensembl chr 4:119,931,458...120,712,462
JBrowse link
thymine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH6A1 aldehyde dehydrogenase 6 family member A1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:97,360,583...97,381,885
Ensembl chr 7:97,357,952...97,381,841
JBrowse link
G DPYD dihydropyrimidine dehydrogenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:119,931,471...120,712,461
Ensembl chr 4:119,931,458...120,712,462
JBrowse link
G DPYS dihydropyrimidinase ISO PMID:8307005 UniProt PMID:8307005 RGD:1624990 NCBI chr 4:32,791,152...32,879,489
Ensembl chr 4:32,789,460...32,879,489
JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 IEA Ensembl GO_REF:0000107 NCBI chr14:7,565,610...7,604,464
Ensembl chr14:7,565,604...7,594,057
JBrowse link
uracil catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase ISS
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 4:119,931,471...120,712,461
Ensembl chr 4:119,931,458...120,712,462
JBrowse link
G DPYS dihydropyrimidinase IEA Ensembl GO_REF:0000107 NCBI chr 4:32,791,152...32,879,489
Ensembl chr 4:32,789,460...32,879,489
JBrowse link
uridine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UPP1 uridine phosphorylase 1 IEA Ensembl GO_REF:0000107 NCBI chr18:48,418,385...48,440,414
Ensembl chr18:48,418,385...48,440,736
JBrowse link
G UPP2 uridine phosphorylase 2 IEA Ensembl GO_REF:0000107 NCBI chr15:65,088,652...65,131,739
Ensembl chr15:65,088,284...65,131,789
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16548
    metabolic process 10584
      nitrogen compound metabolic process 8909
        cellular nitrogen compound metabolic process 5624
          cellular nitrogen compound catabolic process 393
            pyrimidine-containing compound catabolic process 24
              5-methylcytosine catabolic process 3
              pyrimidine nucleobase catabolic process + 8
              pyrimidine nucleoside catabolic process + 9
              pyrimidine nucleotide catabolic process + 5
              thiamine diphosphate catabolic process 0
              thiamine-containing compound catabolic process + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.