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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine-containing compound catabolic process
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Accession:GO:0072529 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof.
Synonyms:exact_synonym: pyrimidine and derivative catabolic process;   pyrimidine-containing compound breakdown;   pyrimidine-containing compound catabolism;   pyrimidine-containing compound degradation


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5-methylcytosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tet1 tet methylcytosine dioxygenase 1 IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr10:62,804,570...62,887,469
Ensembl chr10:62,804,570...62,908,996
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:133,463,677...133,545,136
Ensembl chr 3:133,463,679...133,545,139
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 6:83,362,373...83,457,208
Ensembl chr 6:83,362,373...83,459,084
JBrowse link
cytidine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase IMP (MGI:2656023|PMID:12692563) UniProt PMID:12692563 MGI:2656023 NCBI chr 6:122,553,809...122,564,180
Ensembl chr 6:122,553,801...122,564,180
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 IBA (MGI:6201960|PMID:21873635) GOC PMID:21873635 MGI:6201960 NCBI chr 6:122,577,792...122,603,024
Ensembl chr 6:122,577,792...122,602,444
JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2 IBA (MGI:6201960|PMID:21873635) GOC PMID:21873635 MGI:6201960 NCBI chr17:48,419,231...48,432,728
Ensembl chr17:48,419,231...48,432,930
JBrowse link
G Cda cytidine deaminase ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 4:138,338,528...138,368,311
Ensembl chr 4:138,338,424...138,367,992
JBrowse link
G Cdadc1 cytidine and dCMP deaminase domain containing 1 ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:59,559,386...59,597,985
Ensembl chr14:59,559,388...59,597,959
JBrowse link
G Pycrl pyrroline-5-carboxylate reductase-like ISO MGI GO_REF:0000008 MGI:2154458 NCBI chr15:75,916,463...75,921,560
Ensembl chr15:75,916,477...75,921,560
JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cda cytidine deaminase ISO MGI GO_REF:0000004 MGI:1354194 NCBI chr 4:138,338,528...138,368,311
Ensembl chr 4:138,338,424...138,367,992
JBrowse link
G Nt5c3 5'-nucleotidase, cytosolic III ISO MGI GO_REF:0000004 MGI:1354194 NCBI chr 6:56,882,400...56,924,008
Ensembl chr 6:56,882,400...56,923,932
JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 7:127,256,959...127,260,667
Ensembl chr 7:127,256,959...127,260,709
JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase ISO MGI GO_REF:0000004 MGI:1354194 NCBI chr 3:118,562,109...119,432,924
Ensembl chr 3:118,562,129...119,432,924
JBrowse link
G Dpys dihydropyrimidinase ISO MGI GO_REF:0000004 MGI:1354194 NCBI chr15:39,768,485...39,857,470
Ensembl chr15:39,768,487...39,857,470
JBrowse link
G Nt5c 5',3'-nucleotidase, cytosolic IDA (MGI:55510|PMID:6301357) MGI PMID:6301357 MGI:55510 NCBI chr11:115,490,420...115,492,070
Ensembl chr11:115,490,420...115,491,862
JBrowse link
G Nt5c3 5'-nucleotidase, cytosolic III ISO MGI GO_REF:0000004 MGI:1354194 NCBI chr 6:56,882,400...56,924,008
Ensembl chr 6:56,882,400...56,923,932
JBrowse link
G Tymp thymidine phosphorylase IMP (MGI:2183137|PMID:12077348) MGI PMID:12077348 MGI:2183137 NCBI chr15:89,371,631...89,377,036
Ensembl chr15:89,371,931...89,377,039
JBrowse link
G Upb1 ureidopropionase, beta ISO MGI GO_REF:0000004 MGI:1354194 NCBI chr10:75,406,911...75,441,679
Ensembl chr10:75,401,115...75,441,679
JBrowse link
G Upp1 uridine phosphorylase 1 IMP (MGI:2183137|PMID:12077348) MGI PMID:12077348 MGI:2183137 NCBI chr11:9,118,008...9,136,170
Ensembl chr11:9,118,103...9,136,170
JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT ISO (PMID:24467396) UniProtKB PMID:24467396 NCBI chr 7:127,256,959...127,260,667
Ensembl chr 7:127,256,959...127,260,709
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase IDA (MGI:53656|PMID:5472365) MGI PMID:5472365 MGI:53656 NCBI chr 3:118,562,109...119,432,924
Ensembl chr 3:118,562,129...119,432,924
JBrowse link
G Dpys dihydropyrimidinase IDA (MGI:53656|PMID:5472365) MGI PMID:5472365 MGI:53656 NCBI chr15:39,768,485...39,857,470
Ensembl chr15:39,768,487...39,857,470
JBrowse link
G Nt5c 5',3'-nucleotidase, cytosolic IDA (MGI:1353788|PMID:10681516) MGI PMID:10681516 MGI:1353788 NCBI chr11:115,490,420...115,492,070
Ensembl chr11:115,490,420...115,491,862
JBrowse link
G Nt5c3 5'-nucleotidase, cytosolic III ISO MGI GO_REF:0000004 MGI:1354194 NCBI chr 6:56,882,400...56,924,008
Ensembl chr 6:56,882,400...56,923,932
JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial IDA (MGI:2388903|PMID:12234672) MGI PMID:12234672 MGI:2388903 NCBI chr11:59,847,947...59,876,533
Ensembl chr11:59,839,447...59,880,968
JBrowse link
G Upb1 ureidopropionase, beta IDA (MGI:53656|PMID:5472365) MGI PMID:5472365 MGI:53656 NCBI chr10:75,406,911...75,441,679
Ensembl chr10:75,401,115...75,441,679
JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 NCBI chr 2:125,247,248...125,259,049
Ensembl chr 2:125,247,190...125,258,608
JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5',3'-nucleotidase, cytosolic IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr11:115,490,420...115,492,070
Ensembl chr11:115,490,420...115,491,862
JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:59,847,947...59,876,533
Ensembl chr11:59,839,447...59,880,968
JBrowse link
pyrimidine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crmp1 collapsin response mediator protein 1 NOT IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:37,242,058...37,292,163
Ensembl chr 5:37,241,940...37,292,133
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase ISO
IDA
(MGI:2657070|PMID:12651209) MGI PMID:12651209 GO_REF:0000096 MGI:2657070 MGI:4417868 MGI:4834177 NCBI chr 3:118,562,109...119,432,924
Ensembl chr 3:118,562,129...119,432,924
JBrowse link
G Dpys dihydropyrimidinase ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr15:39,768,485...39,857,470
Ensembl chr15:39,768,487...39,857,470
JBrowse link
G Dpysl2 dihydropyrimidinase-like 2 NOT IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr14:66,802,864...66,911,041
Ensembl chr14:66,802,864...66,868,688
JBrowse link
G Dpysl3 dihydropyrimidinase-like 3 NOT IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr18:43,320,979...43,438,286
Ensembl chr18:43,320,984...43,438,286
JBrowse link
G Dpysl4 dihydropyrimidinase-like 4 NOT IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 7:139,085,981...139,101,795
Ensembl chr 7:139,086,001...139,102,704
JBrowse link
G Dpysl5 dihydropyrimidinase-like 5 NOT IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:30,711,564...30,799,369
Ensembl chr 5:30,711,564...30,799,375
JBrowse link
pyrimidine nucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upb1 ureidopropionase, beta ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:75,406,911...75,441,679
Ensembl chr10:75,401,115...75,441,679
JBrowse link
thymidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:118,562,109...119,432,924
Ensembl chr 3:118,562,129...119,432,924
JBrowse link
thymine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh6a1 aldehyde dehydrogenase family 6, subfamily A1 ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:4834177 MGI:6201960 NCBI chr12:84,430,717...84,451,024
Ensembl chr12:84,430,717...84,451,004
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 3:118,562,109...119,432,924
Ensembl chr 3:118,562,129...119,432,924
JBrowse link
G Dpys dihydropyrimidinase ISS
ISO
(MGI:5009216|PMID:8307005) BHF-UCL
MGI
PMID:8307005 GO_REF:0000096 MGI:4417868 MGI:5009216 NCBI chr15:39,768,485...39,857,470
Ensembl chr15:39,768,487...39,857,470
JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr14:69,337,151...69,366,742
Ensembl chr14:69,337,174...69,367,270
JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr19:43,689,689...43,733,853
Ensembl chr19:43,689,672...43,733,697
JBrowse link
UMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase IDA (MGI:53656|PMID:5472365) MGI PMID:5472365 MGI:53656 NCBI chr 3:118,562,109...119,432,924
Ensembl chr 3:118,562,129...119,432,924
JBrowse link
G Dpys dihydropyrimidinase IDA (MGI:53656|PMID:5472365) MGI PMID:5472365 MGI:53656 NCBI chr15:39,768,485...39,857,470
Ensembl chr15:39,768,487...39,857,470
JBrowse link
G Nt5c 5',3'-nucleotidase, cytosolic IDA (MGI:1353788|PMID:10681516) MGI PMID:10681516 MGI:1353788 NCBI chr11:115,490,420...115,492,070
Ensembl chr11:115,490,420...115,491,862
JBrowse link
G Nt5c3 5'-nucleotidase, cytosolic III ISO MGI GO_REF:0000004 MGI:1354194 NCBI chr 6:56,882,400...56,924,008
Ensembl chr 6:56,882,400...56,923,932
JBrowse link
G Upb1 ureidopropionase, beta IDA (MGI:53656|PMID:5472365) MGI PMID:5472365 MGI:53656 NCBI chr10:75,406,911...75,441,679
Ensembl chr10:75,401,115...75,441,679
JBrowse link
G Upp1 uridine phosphorylase 1 IDA (MGI:2683856|PMID:14715930), (MGI:73237|PMID:7744869) MGI PMID:7744869 PMID:14715930 MGI:2683856 MGI:73237 NCBI chr11:9,118,008...9,136,170
Ensembl chr11:9,118,103...9,136,170
JBrowse link
G Upp2 uridine phosphorylase 2 IDA (MGI:2683856|PMID:14715930) MGI PMID:14715930 MGI:2683856 NCBI chr 2:58,566,317...58,795,846
Ensembl chr 2:58,567,298...58,792,971
JBrowse link
uracil catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 3:118,562,109...119,432,924
Ensembl chr 3:118,562,129...119,432,924
JBrowse link
G Dpys dihydropyrimidinase ISS
ISO
(MGI:5009216|PMID:8307005) BHF-UCL
MGI
PMID:8307005 GO_REF:0000096 MGI:4417868 MGI:4834177 MGI:5009216 NCBI chr15:39,768,485...39,857,470
Ensembl chr15:39,768,487...39,857,470
JBrowse link
uridine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upp1 uridine phosphorylase 1 IDA
ISO
(MGI:5476603|PMID:23355744), (MGI:73237|PMID:7744869) CACAO
MGI
PMID:7744869 PMID:23355744 GO_REF:0000096 MGI:4834177 MGI:5476603 MGI:73237 NCBI chr11:9,118,008...9,136,170
Ensembl chr11:9,118,103...9,136,170
JBrowse link
G Upp2 uridine phosphorylase 2 ISO
IDA
(MGI:2683856|PMID:14715930) MGI
UniProt
PMID:14715930 GO_REF:0000096 MGI:2683856 MGI:4834177 NCBI chr 2:58,566,317...58,795,846
Ensembl chr 2:58,567,298...58,792,971
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23387
    metabolic process 11211
      nitrogen compound metabolic process 9215
        cellular nitrogen compound metabolic process 5978
          cellular nitrogen compound catabolic process 421
            pyrimidine-containing compound catabolic process 28
              5-methylcytosine catabolic process 3
              pyrimidine nucleobase catabolic process + 8
              pyrimidine nucleoside catabolic process + 10
              pyrimidine nucleotide catabolic process + 14
              thiamine diphosphate catabolic process 0
              thiamine-containing compound catabolic process + 0
paths to the root