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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine-containing compound catabolic process
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Accession:GO:0072529 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof.
Synonyms:exact_synonym: pyrimidine and derivative catabolic process;   pyrimidine-containing compound breakdown;   pyrimidine-containing compound catabolism;   pyrimidine-containing compound degradation


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5-methylcytosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tet2 tet methylcytosine dioxygenase 2 ISO (PMID:24315485) UniProtKB PMID:24315485 NCBI chrNW_004955496:3,885,684...3,963,056
Ensembl chrNW_004955496:3,885,035...3,926,106
JBrowse link
cytidine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cda cytidine deaminase ISO (PMID:9596658) RGD
UniProtKB
PMID:675715, PMID:9596658 RGD:2316616 NCBI chrNW_004955452:1,131,968...1,156,777
Ensembl chrNW_004955452:1,132,049...1,156,565
JBrowse link
G Cdadc1 cytidine and dCMP deaminase domain containing 1 ISO (PMID:26945630) UniProtKB PMID:26945630 NCBI chrNW_004955431:2,724,988...2,767,539
Ensembl chrNW_004955431:2,725,742...2,767,664
JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 ISO (PMID:24467396) UniProtKB PMID:24467396 NCBI chrNW_004955493:7,357,204...7,360,034
Ensembl chrNW_004955493:7,357,204...7,360,034
JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT ISO (PMID:24467396) UniProtKB PMID:24467396 NCBI chrNW_004955493:7,357,204...7,360,034
Ensembl chrNW_004955493:7,357,204...7,360,034
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5m 5',3'-nucleotidase, mitochondrial ISO (MGI:2388903|PMID:12234672) MGI PMID:12234672 MGI:2388903 NCBI chrNW_004955577:582,206...608,614 JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase ISO RGD PMID:1315924, PMID:3032103 RGD:2300191, RGD:2301218 NCBI chrNW_004955409:5,574,810...5,584,135
Ensembl chrNW_004955409:5,574,694...5,584,134
JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic ISO (PMID:10681516) UniProtKB PMID:10681516 NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443
JBrowse link
pyrimidine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase ISO (MGI:2657070|PMID:12651209)
(PMID:11988088)
RGD
MGI
UniProtKB
PMID:1629785, PMID:11988088, PMID:12651209 MGI:2657070, RGD:1599794 NCBI chrNW_004955435:2,007,185...2,800,907
Ensembl chrNW_004955435:2,007,185...2,766,138
JBrowse link
G Dpys dihydropyrimidinase ISO (PMID:9718352) UniProtKB PMID:9718352 NCBI chrNW_004955417:28,183,771...28,244,309
Ensembl chrNW_004955417:28,185,407...28,244,307
JBrowse link
pyrimidine nucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upb1 beta-ureidopropionase 1 ISO (PMID:22525402) UniProt PMID:22525402 NCBI chrNW_004955455:7,961,296...7,992,235
Ensembl chrNW_004955455:7,961,264...7,995,946
JBrowse link
thymidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase ISO (PMID:1512248) UniProtKB PMID:1512248 NCBI chrNW_004955435:2,007,185...2,800,907
Ensembl chrNW_004955435:2,007,185...2,766,138
JBrowse link
thymine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh6a1 aldehyde dehydrogenase 6 family member A1 ISO (PMID:23835272) RGD
BHF-UCL
PMID:2768248, PMID:23835272 RGD:1599052 NCBI chrNW_004955523:1,343,545...1,369,080
Ensembl chrNW_004955523:1,343,545...1,369,073
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase ISO (PMID:10410956) UniProtKB PMID:10410956 NCBI chrNW_004955435:2,007,185...2,800,907
Ensembl chrNW_004955435:2,007,185...2,766,138
JBrowse link
G Dpys dihydropyrimidinase ISO PMID:8307005 UniProt PMID:8307005 RGD:1624990 NCBI chrNW_004955417:28,183,771...28,244,309
Ensembl chrNW_004955417:28,185,407...28,244,307
JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 ISO (PMID:9556635) UniProtKB PMID:9556635 NCBI chrNW_004955403:46,609,211...46,637,622
Ensembl chrNW_004955403:46,609,211...46,637,643
JBrowse link
uracil catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase ISO (PMID:1512248), (PMID:18075467) UniProtKB PMID:1512248, PMID:18075467 NCBI chrNW_004955435:2,007,185...2,800,907
Ensembl chrNW_004955435:2,007,185...2,766,138
JBrowse link
G Dpys dihydropyrimidinase ISO PMID:8307005
(PMID:18075467)
(PMID:10410956)
UniProt
UniProtKB
PMID:8307005, PMID:10410956, PMID:18075467 RGD:1624990 NCBI chrNW_004955417:28,183,771...28,244,309
Ensembl chrNW_004955417:28,185,407...28,244,307
JBrowse link
uridine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upp1 uridine phosphorylase 1 ISO (PMID:7488099)
(MGI:5476603|PMID:23355744), (MGI:73237|PMID:7744869)
UniProt
CACAO
PMID:7488099, PMID:7744869, PMID:23355744 MGI:5476603, MGI:73237 NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336
JBrowse link
G Upp2 uridine phosphorylase 2 ISO (PMID:12849978), (PMID:21855639)
(MGI:2683856|PMID:14715930)
UniProt PMID:12849978, PMID:14715930, PMID:21855639 MGI:2683856 NCBI chrNW_004955449:15,355,592...15,405,997
Ensembl chrNW_004955449:15,365,106...15,405,235
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11892
    metabolic process 7608
      nitrogen compound metabolic process 6411
        cellular nitrogen compound metabolic process 4054
          cellular nitrogen compound catabolic process 292
            pyrimidine-containing compound catabolic process 14
              5-methylcytosine catabolic process 1
              pyrimidine nucleobase catabolic process + 3
              pyrimidine nucleoside catabolic process + 6
              pyrimidine nucleotide catabolic process + 5
              thiamine diphosphate catabolic process 0
              thiamine-containing compound catabolic process + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.