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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine-containing compound catabolic process
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Accession:GO:0072529 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof.
Synonyms:exact_synonym: pyrimidine and derivative catabolic process;   pyrimidine-containing compound breakdown;   pyrimidine-containing compound catabolism;   pyrimidine-containing compound degradation


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5-methylcytosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TET2 tet methylcytosine dioxygenase 2 ISO (PMID:24315485) UniProtKB PMID:24315485 NCBI chr 4:97,612,439...97,745,544
Ensembl chr 4:108,269,082...108,358,400
JBrowse link
cytidine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase ISO (MGI:2656023|PMID:12692563) UniProt PMID:12692563 MGI:2656023 NCBI chr12:8,688,392...8,699,008
Ensembl chr12:8,904,273...8,913,917
JBrowse link
G APOBEC3C apolipoprotein B mRNA editing enzyme catalytic subunit 3C ISO (PMID:21632763) UniProtKB PMID:21632763 NCBI chr22:19,924,116...19,930,771
Ensembl chr22:37,743,388...37,749,725
JBrowse link
G APOBEC3G apolipoprotein B mRNA editing enzyme catalytic subunit 3G ISO (PMID:16378963) UniProtKB PMID:16378963 NCBI chr22:19,977,184...19,994,769 JBrowse link
G CDA cytidine deaminase ISO (PMID:9596658) RGD
UniProtKB
PMID:675715, PMID:9596658 RGD:2316616 NCBI chr 1:19,538,696...19,568,008
Ensembl chr 1:20,583,441...20,612,711
JBrowse link
G CDADC1 cytidine and dCMP deaminase domain containing 1 ISO (PMID:26945630) UniProtKB PMID:26945630 NCBI chr13:30,386,671...30,432,112
Ensembl chr13:49,138,498...49,186,541
JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 ISO (PMID:24467396) UniProtKB PMID:24467396 NCBI chr16:24,538,023...24,545,426
Ensembl chr16:30,794,268...30,802,179
JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 NOT ISO (PMID:24467396) UniProtKB PMID:24467396 NCBI chr16:24,538,023...24,545,426
Ensembl chr16:30,794,268...30,802,179
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5M 5',3'-nucleotidase, mitochondrial ISO (MGI:2388903|PMID:12234672) MGI PMID:12234672 MGI:2388903 NCBI chr17:33,948,270...33,991,485 JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase ISO RGD PMID:1315924, PMID:3032103 RGD:2300191, RGD:2301218 NCBI chr15:27,280,025...27,292,003
Ensembl chr15:45,603,807...45,616,022
JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic ISO (PMID:10681516) UniProtKB PMID:10681516 NCBI chr17:69,077,021...69,078,998 JBrowse link
pyrimidine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase ISO (PMID:11988088)
(MGI:2657070|PMID:12651209)
UniProtKB
MGI
RGD
PMID:1629785, PMID:11988088, PMID:12651209 MGI:2657070, RGD:1599794 NCBI chr 1:99,736,145...100,576,663
Ensembl chr 1:98,457,934...99,300,100
JBrowse link
G DPYS dihydropyrimidinase ISO (PMID:9718352) UniProtKB PMID:9718352 NCBI chr 8:101,008,090...101,096,234
Ensembl chr 8:103,160,922...103,248,303
JBrowse link
pyrimidine nucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UPB1 beta-ureidopropionase 1 ISO (PMID:22525402) UniProt PMID:22525402 NCBI chr22:5,300,686...5,332,735
Ensembl chr22:22,166,370...22,197,360
JBrowse link
thymidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase ISO (PMID:1512248) UniProtKB PMID:1512248 NCBI chr 1:99,736,145...100,576,663
Ensembl chr 1:98,457,934...99,300,100
JBrowse link
thymine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH6A1 aldehyde dehydrogenase 6 family member A1 ISO (PMID:23835272) BHF-UCL
RGD
PMID:2768248, PMID:23835272 RGD:1599052 NCBI chr14:54,616,531...54,643,346
Ensembl chr14:73,472,255...73,495,734
JBrowse link
G DPYD dihydropyrimidine dehydrogenase ISO (PMID:10410956) UniProtKB PMID:10410956 NCBI chr 1:99,736,145...100,576,663
Ensembl chr 1:98,457,934...99,300,100
JBrowse link
G DPYS dihydropyrimidinase ISO PMID:8307005 UniProt PMID:8307005 RGD:1624990 NCBI chr 8:101,008,090...101,096,234
Ensembl chr 8:103,160,922...103,248,303
JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 ISO (PMID:9556635) UniProtKB PMID:9556635 NCBI chr 8:22,678,746...22,707,408
Ensembl chr 8:19,571,337...19,635,150
JBrowse link
uracil catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase ISO (PMID:1512248), (PMID:18075467) UniProtKB PMID:1512248, PMID:18075467 NCBI chr 1:99,736,145...100,576,663
Ensembl chr 1:98,457,934...99,300,100
JBrowse link
G DPYS dihydropyrimidinase ISO (PMID:18075467)
(PMID:10410956)
PMID:8307005
UniProtKB
UniProt
PMID:8307005, PMID:10410956, PMID:18075467 RGD:1624990 NCBI chr 8:101,008,090...101,096,234
Ensembl chr 8:103,160,922...103,248,303
JBrowse link
uridine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UPP1 uridine phosphorylase 1 ISO (PMID:7488099)
(MGI:5476603|PMID:23355744), (MGI:73237|PMID:7744869)
UniProt
CACAO
PMID:7488099, PMID:7744869, PMID:23355744 MGI:5476603, MGI:73237 NCBI chr 7:48,729,975...48,749,598
Ensembl chr 7:48,838,893...48,858,185
JBrowse link
G UPP2 uridine phosphorylase 2 ISO (PMID:12849978), (PMID:21855639)
(MGI:2683856|PMID:14715930)
UniProt PMID:12849978, PMID:14715930, PMID:21855639 MGI:2683856 NCBI chr2B:45,363,103...45,400,281
Ensembl chr2B:162,496,507...162,636,231
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12566
    metabolic process 7977
      nitrogen compound metabolic process 6686
        cellular nitrogen compound metabolic process 4224
          cellular nitrogen compound catabolic process 304
            pyrimidine-containing compound catabolic process 17
              5-methylcytosine catabolic process 1
              pyrimidine nucleobase catabolic process + 3
              pyrimidine nucleoside catabolic process + 9
              pyrimidine nucleotide catabolic process + 5
              thiamine diphosphate catabolic process 0
              thiamine-containing compound catabolic process + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.