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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine-containing compound biosynthetic process
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Accession:GO:0072528 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof.
Synonyms:exact_synonym: pyrimidine and derivative biosynthetic process;   pyrimidine-containing compound anabolism;   pyrimidine-containing compound biosynthesis;   pyrimidine-containing compound formation;   pyrimidine-containing compound synthesis


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'de novo' CTP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctps1 CTP synthase 1 JBrowse link 5 139,475,934 139,505,065 RGD:1600115
G Ctps2 CTP synthase 2 JBrowse link X 33,383,087 33,522,852 RGD:1600115
'de novo' pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase JBrowse link 6 26,657,507 26,680,459 RGD:5132591
RGD:13792537
RGD:1624291
G Cmpk1 cytidine/uridine monophosphate kinase 1 JBrowse link 5 133,759,722 133,786,452 RGD:1600115
G Cps1 carbamoyl-phosphate synthase 1 JBrowse link 9 74,113,437 74,236,274 RGD:1600115
G Dhodh dihydroorotate dehydrogenase (quinone) JBrowse link 19 42,066,103 42,087,906 RGD:5132591
RGD:13792537
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:1624291
G Umps uridine monophosphate synthetase JBrowse link 11 70,034,181 70,044,590 RGD:1600115
'de novo' UMP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhodh dihydroorotate dehydrogenase (quinone) JBrowse link 19 42,066,103 42,087,906 RGD:1600115
G Umps uridine monophosphate synthetase JBrowse link 11 70,034,181 70,044,590 RGD:1600115
CDP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmpk1 cytidine/uridine monophosphate kinase 1 JBrowse link 5 133,759,722 133,786,452 RGD:5133253
CDP-diacylglycerol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agpat4 1-acylglycerol-3-phosphate O-acyltransferase 4 JBrowse link 1 48,716,094 48,826,292 RGD:1600115
G Cds1 CDP-diacylglycerol synthase 1 JBrowse link 14 9,396,511 9,456,964 RGD:1600115
RGD:1624291
G Cds2 CDP-diacylglycerol synthase 2 JBrowse link 3 124,896,657 124,935,221 RGD:1600115
RGD:1624291
G Gpam glycerol-3-phosphate acyltransferase, mitochondrial JBrowse link 1 275,843,823 275,906,880 RGD:1600115
G Gpat3 glycerol-3-phosphate acyltransferase 3 JBrowse link 14 10,343,287 10,396,565 RGD:1600115
G Tamm41 TAM41 mitochondrial translocator assembly and maintenance homolog JBrowse link 4 146,922,085 146,954,159 RGD:1600115
CTP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctps1 CTP synthase 1 JBrowse link 5 139,475,934 139,505,065 RGD:1624291
RGD:13792537
G Ctps2 CTP synthase 2 JBrowse link X 33,383,087 33,522,852 RGD:13792537
G Decr2 2,4-dienoyl-CoA reductase 2 JBrowse link 10 15,451,850 15,460,227 RGD:1600115
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 JBrowse link 10 81,657,152 81,666,542 RGD:1600115
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 JBrowse link 10 81,648,216 81,653,717 RGD:729254
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 JBrowse link 10 14,258,232 14,259,365 RGD:1600115
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 JBrowse link 10 15,461,567 15,465,422 RGD:1600115
G Nme5 NME/NM23 family member 5 JBrowse link 18 27,357,460 27,374,641 RGD:1600115
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 JBrowse link 8 117,920,912 117,928,148 RGD:1600115
G Nme7 NME/NM23 family member 7 JBrowse link 13 82,607,844 82,737,383 RGD:1600115
CTP salvage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Uck1 uridine-cytidine kinase 1 JBrowse link 3 11,271,874 11,277,757 RGD:1600115
G Uck2 uridine-cytidine kinase 2 JBrowse link 13 85,376,716 85,443,976 RGD:1600115
G Uckl1 uridine-cytidine kinase 1-like 1 JBrowse link 3 177,066,022 177,078,611 RGD:1600115
dCDP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmpk1 cytidine/uridine monophosphate kinase 1 JBrowse link 5 133,759,722 133,786,452 RGD:5133256
dTDP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmpk2 cytidine/uridine monophosphate kinase 2 JBrowse link 6 45,683,242 45,694,824 RGD:5133256
RGD:13792537
G Dtymk deoxythymidylate kinase JBrowse link 9 100,921,565 100,930,399 RGD:5133687
RGD:13792537
RGD:1624291
dTMP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdadc1 cytidine and dCMP deaminase domain containing 1 JBrowse link 15 39,865,094 39,894,122 RGD:13792537
G Dctd dCMP deaminase JBrowse link 16 47,177,144 47,222,850 RGD:13792537
G Shmt1 serine hydroxymethyltransferase 1 JBrowse link 10 47,030,813 47,059,216 RGD:1624291
G Tyms thymidylate synthetase JBrowse link 9 121,918,875 121,931,564 RGD:1545055
RGD:13792537
RGD:1624291
dTTP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmpk2 cytidine/uridine monophosphate kinase 2 JBrowse link 6 45,683,242 45,694,824 RGD:13792537
G Dtymk deoxythymidylate kinase JBrowse link 9 100,921,565 100,930,399 RGD:5133687
RGD:13792537
G Tbpl1 TATA-box binding protein like 1 JBrowse link 1 23,977,154 24,002,512 RGD:1624291
G Tyms thymidylate synthetase JBrowse link 9 121,918,875 121,931,564 RGD:1600115
dUDP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmpk1 cytidine/uridine monophosphate kinase 1 JBrowse link 5 133,759,722 133,786,452 RGD:5133253
G Cmpk2 cytidine/uridine monophosphate kinase 2 JBrowse link 6 45,683,242 45,694,824 RGD:5133256
RGD:13792537
G Dtymk deoxythymidylate kinase JBrowse link 9 100,921,565 100,930,399 RGD:13792537
dUMP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07001512.1 RGD:13792537
G Cdadc1 cytidine and dCMP deaminase domain containing 1 JBrowse link 15 39,865,094 39,894,122 RGD:13792537
G Dctd dCMP deaminase JBrowse link 16 47,177,144 47,222,850 RGD:13792537
G Dut deoxyuridine triphosphatase JBrowse link 3 117,514,399 117,525,450 RGD:2300191
RGD:13792537
RGD:1600115
RGD:2301218
pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctps1 CTP synthase 1 JBrowse link 5 139,475,934 139,505,065 RGD:13792537
G Ctps2 CTP synthase 2 JBrowse link X 33,383,087 33,522,852 RGD:13792537
G Umps uridine monophosphate synthetase JBrowse link 11 70,034,181 70,044,590 RGD:13792537
pyrimidine nucleotide biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmpk1 cytidine/uridine monophosphate kinase 1 JBrowse link 5 133,759,722 133,786,452 RGD:1600115
pyrimidine ribonucleotide biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhodh dihydroorotate dehydrogenase (quinone) JBrowse link 19 42,066,103 42,087,906 RGD:13792537
thiamine diphosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tpk1 thiamin pyrophosphokinase 1 JBrowse link 4 72,792,252 73,174,179 RGD:1600115
RGD:13792537
UDP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmpk1 cytidine/uridine monophosphate kinase 1 JBrowse link 5 133,759,722 133,786,452 RGD:5133253
UMP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Umps uridine monophosphate synthetase JBrowse link 11 70,034,181 70,044,590 RGD:5132277
RGD:13792537
RGD:1624291
G Uprt uracil phosphoribosyltransferase homolog JBrowse link X 75,382,553 75,408,541 RGD:5132591
UMP salvage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Uck1 uridine-cytidine kinase 1 JBrowse link 3 11,271,874 11,277,757 RGD:1600115
G Uck2 uridine-cytidine kinase 2 JBrowse link 13 85,376,716 85,443,976 RGD:1600115
G Uckl1 uridine-cytidine kinase 1-like 1 JBrowse link 3 177,066,022 177,078,611 RGD:1600115
G Upp1 uridine phosphorylase 1 JBrowse link 14 89,314,234 89,334,060 RGD:1600115
G Upp2 uridine phosphorylase 2 JBrowse link 3 44,806,106 44,846,464 RGD:1600115
UTP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase JBrowse link 6 26,657,507 26,680,459 RGD:2303528
RGD:13792537
G Decr2 2,4-dienoyl-CoA reductase 2 JBrowse link 10 15,451,850 15,460,227 RGD:1600115
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 JBrowse link 10 81,657,152 81,666,542 RGD:1600115
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 JBrowse link 10 81,648,216 81,653,717 RGD:729254
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 JBrowse link 10 14,258,232 14,259,365 RGD:1600115
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 JBrowse link 10 15,461,567 15,465,422 RGD:1600115
G Nme5 NME/NM23 family member 5 JBrowse link 18 27,357,460 27,374,641 RGD:1600115
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 JBrowse link 8 117,920,912 117,928,148 RGD:1600115
G Nme7 NME/NM23 family member 7 JBrowse link 13 82,607,844 82,737,383 RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19439
    metabolic process 11638
      biosynthetic process 5985
        cellular biosynthetic process 5810
          heterocycle biosynthetic process 3834
            pyrimidine-containing compound biosynthetic process 38
              5-methylcytosine biosynthetic process 0
              pyrimidine nucleobase biosynthetic process + 8
              pyrimidine nucleoside biosynthetic process + 0
              pyrimidine nucleotide biosynthetic process + 35
              thiamine diphosphate biosynthetic process + 1
              thiamine-containing compound biosynthetic process + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.