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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine-containing compound biosynthetic process
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Accession:GO:0072528 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof.
Synonyms:exact_synonym: pyrimidine and derivative biosynthetic process;   pyrimidine-containing compound anabolism;   pyrimidine-containing compound biosynthesis;   pyrimidine-containing compound formation;   pyrimidine-containing compound synthesis

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'de novo' CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps1 CTP synthase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 5:139,475,934...139,505,065
Ensembl chr 5:139,475,934...139,505,065 		JBrowse link
G Ctps2 CTP synthase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr  X:33,383,087...33,522,852
Ensembl chr  X:33,383,087...33,522,836 		JBrowse link
'de novo' pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IDA
IBA
ISO		 PMID:21873635
(PMID:24332717)		 RGD PMID:24332717, PMID:1476792, PMID:21873635, PMID:21873635 RGD:5132591, RGD:13792537, RGD:13792537 NCBI chr 6:26,657,507...26,680,459
Ensembl chr 6:26,657,780...26,680,284 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:133,759,722...133,786,452
Ensembl chr 5:133,759,735...133,786,452 		JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:74,113,437...74,236,274
Ensembl chr 9:74,124,016...74,236,274 		JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:1476792, PMID:21873635, PMID:21873635 RGD:5132591, RGD:13792537, RGD:13792537 NCBI chr19:42,066,103...42,087,906
Ensembl chr19:42,066,351...42,082,012 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO (MGI:5469988|PMID:23429704) RGD PMID:23429704 MGI:5469988 NCBI chr 5:165,263,813...165,373,967
Ensembl chr 5:165,263,800...165,373,967 		JBrowse link
G Umps uridine monophosphate synthetase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:70,034,181...70,044,590
Ensembl chr11:70,034,139...70,044,628 		JBrowse link
'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 6:26,657,507...26,680,459
Ensembl chr 6:26,657,780...26,680,284 		JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr19:42,066,103...42,087,906
Ensembl chr19:42,066,351...42,082,012 		JBrowse link
G Umps uridine monophosphate synthetase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr11:70,034,181...70,044,590
Ensembl chr11:70,034,139...70,044,628 		JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:3010881, PMID:21873635, PMID:21873635 RGD:5133253, RGD:13792537, RGD:13792537 NCBI chr 5:133,759,722...133,786,452
Ensembl chr 5:133,759,735...133,786,452 		JBrowse link
CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps1 CTP synthase 1 involved_in ISO
IBA		 (PMID:16179339), (PMID:24870241)
PMID:21873635		 RGD PMID:16179339 PMID:24870241, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:139,475,934...139,505,065
Ensembl chr 5:139,475,934...139,505,065 		JBrowse link
G Ctps2 CTP synthase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:33,383,087...33,522,852
Ensembl chr  X:33,383,087...33,522,836 		JBrowse link
G Decr2 2,4-dienoyl-CoA reductase 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,451,850...15,460,227
Ensembl chr10:15,431,638...15,465,413 		JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:81,657,152...81,666,542
Ensembl chr10:81,657,153...81,666,523 		JBrowse link
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 IDA RGD PMID:1316151 RGD:729254 NCBI chr10:81,648,216...81,653,717
Ensembl chr10:81,648,216...81,653,717 		JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:14,258,232...14,259,365
Ensembl chr10:14,258,380...14,259,336 		JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,461,567...15,465,422
Ensembl chr10:15,431,638...15,465,413 		JBrowse link
G Nme5 NME/NM23 family member 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:27,357,460...27,374,641
Ensembl chr18:27,357,413...27,374,603 		JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:117,920,912...117,928,148
Ensembl chr 8:117,920,944...117,928,195 		JBrowse link
G Nme7 NME/NM23 family member 7 involved_in IEA GO_REF:0000002
GO_REF:0000104		 InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr13:82,607,844...82,737,383
Ensembl chr13:82,626,685...82,737,343 		JBrowse link
CTP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uck1 uridine-cytidine kinase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:11,271,874...11,277,757
Ensembl chr 3:11,271,885...11,277,757 		JBrowse link
G Uck2 uridine-cytidine kinase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr13:85,376,716...85,443,976
Ensembl chr13:85,376,716...85,443,976 		JBrowse link
G Uckl1 uridine-cytidine kinase 1-like 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:177,066,022...177,078,611
Ensembl chr 3:177,066,014...177,078,594 		JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 IDA RGD PMID:192455 RGD:5133256 NCBI chr 5:133,759,722...133,786,452
Ensembl chr 5:133,759,735...133,786,452 		JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:192455, PMID:21873635, PMID:21873635 RGD:5133256, RGD:13792537, RGD:13792537 NCBI chr 6:45,683,242...45,694,824
Ensembl chr 6:45,683,234...45,694,822 		JBrowse link
G Dtymk deoxythymidylate kinase acts_upstream_of_or_within
involved_in		 IDA
ISO
IBA		 (MGI:77260|PMID:8845311)
PMID:21873635		 RGD PMID:8845311, PMID:220041, PMID:21873635, PMID:21873635 MGI:77260, RGD:5133687, RGD:13792537, RGD:13792537 NCBI chr 9:100,921,565...100,930,399
Ensembl chr 9:100,921,565...100,930,399 		JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr16:47,177,144...47,222,850
Ensembl chr16:47,177,145...47,208,110 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO (MGI:3849912|PMID:19513116) RGD PMID:19513116 MGI:3849912 NCBI chr10:47,030,813...47,059,216
Ensembl chr10:47,031,050...47,059,216 		JBrowse link
G Tyms thymidylate synthetase involved_in IDA
IBA
ISO		 PMID:21873635
(PMID:11278511), (PMID:15093541), (PMID:8845352)		 RGD PMID:8845352 PMID:11278511 PMID:15093541, PMID:9894005, PMID:21873635, PMID:21873635 RGD:1545055, RGD:13792537, RGD:13792537 NCBI chr 9:121,918,875...121,931,564
Ensembl chr 9:121,918,947...121,931,564 		JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 6:45,683,242...45,694,824
Ensembl chr 6:45,683,234...45,694,822 		JBrowse link
G Dtymk deoxythymidylate kinase involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:220041, PMID:21873635, PMID:21873635 RGD:5133687, RGD:13792537, RGD:13792537 NCBI chr 9:100,921,565...100,930,399
Ensembl chr 9:100,921,565...100,930,399 		JBrowse link
G Tbpl1 TATA-box binding protein like 1 acts_upstream_of_or_within ISO MGI:2182539 (MGI:2159505|PMID:11861477) RGD PMID:11861477 MGI:2159505 NCBI chr 1:23,977,154...24,002,512
Ensembl chr 1:23,977,688...24,002,506 		JBrowse link
G Tyms thymidylate synthetase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 9:121,918,875...121,931,564
Ensembl chr 9:121,918,947...121,931,564 		JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 IDA RGD PMID:3010881 RGD:5133253 NCBI chr 5:133,759,722...133,786,452
Ensembl chr 5:133,759,735...133,786,452 		JBrowse link
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:192455, PMID:21873635, PMID:21873635 RGD:5133256, RGD:13792537, RGD:13792537 NCBI chr 6:45,683,242...45,694,824
Ensembl chr 6:45,683,234...45,694,822 		JBrowse link
G Dtymk deoxythymidylate kinase involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 9:100,921,565...100,930,399
Ensembl chr 9:100,921,565...100,930,399 		JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 involved_in IEA
IBA		 GO_REF:0000041
PMID:21873635		 UniProt PMID:21873635, PMID:21873635 GO_REF:0000041, RGD:13792537, RGD:13792537 Ensembl chr 1:48,565,160...48,565,711 JBrowse link
G Dctd dCMP deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr16:47,177,144...47,222,850
Ensembl chr16:47,177,145...47,208,110 		JBrowse link
G Dut deoxyuridine triphosphatase involved_in IDA
IEA
IBA		 GO_REF:0000041
PMID:21873635		 UniProt PMID:3032103, PMID:21873635, PMID:21873635, PMID:1315924 GO_REF:0000041, RGD:2300191, RGD:13792537, RGD:13792537, RGD:2301218 NCBI chr 3:117,514,399...117,525,450
Ensembl chr 3:117,514,444...117,525,446 		JBrowse link
pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps1 CTP synthase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:139,475,934...139,505,065
Ensembl chr 5:139,475,934...139,505,065 		JBrowse link
G Ctps2 CTP synthase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:33,383,087...33,522,852
Ensembl chr  X:33,383,087...33,522,836 		JBrowse link
G Umps uridine monophosphate synthetase involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr11:70,034,181...70,044,590
Ensembl chr11:70,034,139...70,044,628 		JBrowse link
pyrimidine nucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 5:133,759,722...133,786,452
Ensembl chr 5:133,759,735...133,786,452 		JBrowse link
pyrimidine ribonucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr19:42,066,103...42,087,906
Ensembl chr19:42,066,351...42,082,012 		JBrowse link
thiamine diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpk1 thiamin pyrophosphokinase 1 involved_in IEA
IBA		 GO_REF:0000041
PMID:21873635		 UniProt PMID:21873635, PMID:21873635 GO_REF:0000041, RGD:13792537, RGD:13792537 NCBI chr 4:72,792,252...73,174,179
Ensembl chr 4:72,792,252...73,174,179 		JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:3010881, PMID:21873635, PMID:21873635 RGD:5133253, RGD:13792537, RGD:13792537 NCBI chr 5:133,759,722...133,786,452
Ensembl chr 5:133,759,735...133,786,452 		JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Umps uridine monophosphate synthetase involved_in IDA
ISO
IBA		 (PMID:11730338), (PMID:6893554)
PMID:21873635		 RGD PMID:6893554 PMID:11730338, PMID:6134725, PMID:21873635, PMID:21873635 RGD:5132277, RGD:13792537, RGD:13792537 NCBI chr11:70,034,181...70,044,590
Ensembl chr11:70,034,139...70,044,628 		JBrowse link
G Uprt uracil phosphoribosyltransferase homolog IDA RGD PMID:1476792 RGD:5132591 NCBI chr  X:75,382,553...75,408,541
Ensembl chr  X:75,382,598...75,407,217 		JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uck1 uridine-cytidine kinase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:11,271,874...11,277,757
Ensembl chr 3:11,271,885...11,277,757 		JBrowse link
G Uck2 uridine-cytidine kinase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr13:85,376,716...85,443,976
Ensembl chr13:85,376,716...85,443,976 		JBrowse link
G Uckl1 uridine-cytidine kinase 1-like 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:177,066,022...177,078,611
Ensembl chr 3:177,066,014...177,078,594 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr14:89,314,234...89,334,060
Ensembl chr14:89,314,176...89,334,276 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:44,806,106...44,846,464
Ensembl chr 3:44,806,106...44,846,464 		JBrowse link
UTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:10659854, PMID:21873635, PMID:21873635 RGD:2303528, RGD:13792537, RGD:13792537 NCBI chr 6:26,657,507...26,680,459
Ensembl chr 6:26,657,780...26,680,284 		JBrowse link
G Decr2 2,4-dienoyl-CoA reductase 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,451,850...15,460,227
Ensembl chr10:15,431,638...15,465,413 		JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:81,657,152...81,666,542
Ensembl chr10:81,657,153...81,666,523 		JBrowse link
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 IDA RGD PMID:1316151 RGD:729254 NCBI chr10:81,648,216...81,653,717
Ensembl chr10:81,648,216...81,653,717 		JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:14,258,232...14,259,365
Ensembl chr10:14,258,380...14,259,336 		JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,461,567...15,465,422
Ensembl chr10:15,431,638...15,465,413 		JBrowse link
G Nme5 NME/NM23 family member 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:27,357,460...27,374,641
Ensembl chr18:27,357,413...27,374,603 		JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:117,920,912...117,928,148
Ensembl chr 8:117,920,944...117,928,195 		JBrowse link
G Nme7 NME/NM23 family member 7 involved_in IEA GO_REF:0000002
GO_REF:0000104		 InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr13:82,607,844...82,737,383
Ensembl chr13:82,626,685...82,737,343 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20082
    metabolic process 12142
      biosynthetic process 6263
        cellular biosynthetic process 6094
          heterocycle biosynthetic process 3983
            pyrimidine-containing compound biosynthetic process 31
              5-methylcytosine biosynthetic process 0
              pyrimidine nucleobase biosynthetic process + 8
              pyrimidine nucleoside biosynthetic process + 0
              pyrimidine nucleotide biosynthetic process + 28
              thiamine diphosphate biosynthetic process + 1
              thiamine-containing compound biosynthetic process + 0
paths to the root