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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine-containing compound metabolic process
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Accession:GO:0072527 term browser browse the term
Definition:The chemical reactions and pathways involving a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof.
Synonyms:exact_synonym: pyrimidine and derivative metabolic process;   pyrimidine-containing compound metabolism


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'de novo' CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 IEA UniProt GO_REF:0000041 NCBI chr 6:170,201,749...170,233,105
Ensembl chr 6:170,201,748...170,233,054
JBrowse link
G CTPS2 CTP synthase 2 IEA UniProt GO_REF:0000041 NCBI chr  X:13,050,740...13,181,131
Ensembl chr  X:13,049,941...13,174,568
JBrowse link
'de novo' pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:111,887,017...111,914,511
Ensembl chr 3:111,887,020...111,914,495
JBrowse link
G CMPK1 cytidine/uridine monophosphate kinase 1 IEA InterPro GO_REF:0000002 NCBI chr 6:164,161,439...164,197,429
Ensembl chr 6:164,162,515...164,197,379
JBrowse link
G CPS1 carbamoyl-phosphate synthase 1 IEA InterPro GO_REF:0000002 NCBI chr15:113,210,038...113,339,086
Ensembl chr15:113,209,999...113,339,078
JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 6:14,942,898...14,956,000
Ensembl chr 6:14,942,933...14,956,000
JBrowse link
G MTOR mechanistic target of rapamycin kinase IEA Ensembl GO_REF:0000107 NCBI chr 6:71,286,989...71,412,913
Ensembl chr 6:71,286,989...71,412,888
JBrowse link
G UMPS uridine monophosphate synthetase IEA InterPro GO_REF:0000002 NCBI chr13:135,611,857...135,650,656
Ensembl chr13:135,610,058...135,650,604
JBrowse link
'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase IEA UniProt GO_REF:0000041 NCBI chr 3:111,887,017...111,914,511
Ensembl chr 3:111,887,020...111,914,495
JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) IEA UniProt GO_REF:0000041 NCBI chr 6:14,942,898...14,956,000
Ensembl chr 6:14,942,933...14,956,000
JBrowse link
G UMPS uridine monophosphate synthetase IEA UniProt GO_REF:0000041 NCBI chr13:135,611,857...135,650,656
Ensembl chr13:135,610,058...135,650,604
JBrowse link
5-methylcytosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TET1 tet methylcytosine dioxygenase 1 IEA UniProt GO_REF:0000104 NCBI chr14:71,675,671...71,812,732
Ensembl chr14:71,675,671...71,815,621
JBrowse link
G TET2 tet methylcytosine dioxygenase 2 IEA UniProt GO_REF:0000104 NCBI chr 8:116,413,253...116,546,976
Ensembl chr 8:116,415,267...116,545,299
JBrowse link
G TET3 tet methylcytosine dioxygenase 3 IEA UniProt GO_REF:0000104 NCBI chr 3:68,918,896...69,020,406
Ensembl chr 3:68,918,933...69,020,986
JBrowse link
5-methylcytosine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TET2 tet methylcytosine dioxygenase 2 ISO (MGI:5298314|PMID:21803851) MGI PMID:21803851 MGI:5298314 NCBI chr 8:116,413,253...116,546,976
Ensembl chr 8:116,415,267...116,545,299
JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:164,161,439...164,197,429
Ensembl chr 6:164,162,515...164,197,379
JBrowse link
CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:170,201,749...170,233,105
Ensembl chr 6:170,201,748...170,233,054
JBrowse link
G CTPS2 CTP synthase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:13,050,740...13,181,131
Ensembl chr  X:13,049,941...13,174,568
JBrowse link
G NME1 NME/NM23 nucleoside diphosphate kinase 1 IEA InterPro GO_REF:0000002 NCBI chr12:27,416,308...27,435,044
Ensembl chr12:27,416,337...27,436,160
JBrowse link
G NME2 NME/NM23 nucleoside diphosphate kinase 2 IEA InterPro GO_REF:0000002 NCBI chr12:27,439,529...27,445,025
Ensembl chr12:27,439,260...27,445,026
JBrowse link
G NME3 NME/NM23 nucleoside diphosphate kinase 3 IEA InterPro GO_REF:0000002 NCBI chr 3:40,195,456...40,197,121
Ensembl chr 3:40,195,616...40,196,858
JBrowse link
G NME4 NME/NM23 nucleoside diphosphate kinase 4 IEA InterPro GO_REF:0000002 NCBI chr 3:41,306,167...41,321,002
Ensembl chr 3:41,306,175...41,310,312
JBrowse link
G NME5 NME/NM23 family member 5 IEA InterPro GO_REF:0000002 NCBI chr 2:140,132,871...140,168,655
Ensembl chr 2:140,128,514...140,167,893
JBrowse link
G NME6 NME/NM23 nucleoside diphosphate kinase 6 IEA InterPro GO_REF:0000002 NCBI chr13:31,048,367...31,053,285
Ensembl chr13:31,046,906...31,053,130
JBrowse link
G NME7 NME/NM23 family member 7 IEA UniProt GO_REF:0000104 NCBI chr 4:81,639,907...81,912,276
Ensembl chr 4:81,639,909...81,911,743
JBrowse link
G NME9 NME/NM23 family member 9 IEA InterPro GO_REF:0000002 NCBI chr13:79,083,604...79,114,959
Ensembl chr13:79,089,189...79,114,506
JBrowse link
CTP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 IEA UniProt GO_REF:0000041 NCBI chr 1:271,448,362...271,453,811
Ensembl chr 1:271,448,364...271,453,816
JBrowse link
G UCK2 uridine-cytidine kinase 2 IEA UniProt GO_REF:0000041 NCBI chr 4:84,838,793...84,919,231
Ensembl chr 4:84,838,802...84,919,236
JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 IEA UniProt GO_REF:0000041 NCBI chr17:62,785,419...62,796,396
Ensembl chr17:62,785,419...62,807,552
JBrowse link
G ZNF512B zinc finger protein 512B IEA UniProt GO_REF:0000041 NCBI chr17:62,796,583...62,807,340
Ensembl chr17:62,785,419...62,807,552
JBrowse link
cytidine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase IEA GOC
Ensembl
GO_REF:0000107, GO_REF:0000108 NCBI chr 5:62,777,236...62,787,342
Ensembl chr 5:62,777,352...62,787,483
JBrowse link
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 IEA GOC GO_REF:0000108 NCBI chr 5:62,811,819...62,820,532
Ensembl chr 5:62,810,879...62,820,173
JBrowse link
G APOBEC2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 IEA GOC GO_REF:0000108 NCBI chr 7:36,364,258...36,381,012
Ensembl chr 7:36,364,300...36,384,299
JBrowse link
G CDA cytidine deaminase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:78,824,248...78,849,154
Ensembl chr 6:78,824,284...78,879,462
JBrowse link
G CDADC1 cytidine and dCMP deaminase domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr11:18,467,508...18,518,137
Ensembl chr11:18,458,299...18,518,146
JBrowse link
cytosine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAPK1 mitogen-activated protein kinase 1 ISO (MGI:3510481|PMID:15284227) MGI PMID:15284227 MGI:3510481 NCBI chr14:50,083,079...50,165,528
Ensembl chr14:50,082,896...50,165,523
JBrowse link
G TET2 tet methylcytosine dioxygenase 2 ISO (MGI:5298314|PMID:21803851) MGI PMID:21803851 MGI:5298314 NCBI chr 8:116,413,253...116,546,976
Ensembl chr 8:116,415,267...116,545,299
JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:192455 RGD:5133256 NCBI chr 6:164,161,439...164,197,429
Ensembl chr 6:164,162,515...164,197,379
JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 IEA UniProt GO_REF:0000104 NCBI chr 3:17,896,426...17,900,562
Ensembl chr 3:17,886,895...17,900,563
JBrowse link
deoxycytidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCK deoxycytidine kinase ISO RGD PMID:7686601, PMID:8305745 RGD:2300395, RGD:2300398 NCBI chr 8:67,706,661...67,736,743 JBrowse link
G TK2 thymidine kinase 2 ISO RGD PMID:21444706 RGD:5134349 NCBI chr 6:27,226,421...27,255,645
Ensembl chr 6:27,226,425...27,255,693
JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK2 cytidine/uridine monophosphate kinase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:128,903,395...128,917,873
Ensembl chr 3:128,903,616...128,917,871
JBrowse link
G DTYMK deoxythymidylate kinase IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr15:140,248,071...140,255,803
Ensembl chr15:140,248,068...140,255,892
JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTD dCMP deaminase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:44,466,312...44,492,594
Ensembl chr15:44,466,304...44,492,406
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr12:60,414,421...60,435,451
Ensembl chr12:60,414,446...60,435,450
JBrowse link
G TYMS thymidylate synthetase IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 6:105,642,730...105,660,279
Ensembl chr 6:105,640,031...105,660,601
JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK2 cytidine/uridine monophosphate kinase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:128,903,395...128,917,873
Ensembl chr 3:128,903,616...128,917,871
JBrowse link
G DTYMK deoxythymidylate kinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:140,248,071...140,255,803
Ensembl chr15:140,248,068...140,255,892
JBrowse link
G TBPL1 TATA-box binding protein like 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:29,899,956...29,936,773
Ensembl chr 1:29,899,957...29,936,718
JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 NOT ISO (PMID:24467396) UniProtKB PMID:24467396 NCBI chr 3:17,896,426...17,900,562
Ensembl chr 3:17,886,895...17,900,563
JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chr 6:164,161,439...164,197,429
Ensembl chr 6:164,162,515...164,197,379
JBrowse link
G CMPK2 cytidine/uridine monophosphate kinase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:128,903,395...128,917,873
Ensembl chr 3:128,903,616...128,917,871
JBrowse link
G DTYMK deoxythymidylate kinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:140,248,071...140,255,803
Ensembl chr15:140,248,068...140,255,892
JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTD dCMP deaminase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:44,466,312...44,492,594
Ensembl chr15:44,466,304...44,492,406
JBrowse link
G DUT deoxyuridine triphosphatase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000041 NCBI chr 1:123,451,207...123,462,267
Ensembl chr 1:123,451,212...123,462,232
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5M 5',3'-nucleotidase, mitochondrial IEA Ensembl GO_REF:0000107 NCBI chr12:60,979,496...60,994,577
Ensembl chr12:60,979,499...60,994,582
JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr 1:123,451,207...123,462,267
Ensembl chr 1:123,451,212...123,462,232
JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:6,162,420...6,164,143
Ensembl chr12:6,139,439...6,164,142
JBrowse link
G NT5M 5',3'-nucleotidase, mitochondrial IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:60,979,496...60,994,577
Ensembl chr12:60,979,499...60,994,582
JBrowse link
pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:170,201,749...170,233,105
Ensembl chr 6:170,201,748...170,233,054
JBrowse link
G CTPS2 CTP synthase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:13,050,740...13,181,131
Ensembl chr  X:13,049,941...13,174,568
JBrowse link
G UMPS uridine monophosphate synthetase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:135,611,857...135,650,656
Ensembl chr13:135,610,058...135,650,604
JBrowse link
pyrimidine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRMP1 collapsin response mediator protein 1 NOT IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:4,734,175...4,805,647
Ensembl chr 8:4,734,200...4,805,645
JBrowse link
G DPYD dihydropyrimidine dehydrogenase ISO (PMID:11988088)
(MGI:2657070|PMID:12651209)
UniProtKB
MGI
RGD
PMID:1629785, PMID:11988088, PMID:12651209 MGI:2657070, RGD:1599794 NCBI chr 4:119,931,471...120,712,461
Ensembl chr 4:119,931,458...120,712,462
JBrowse link
G DPYS dihydropyrimidinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:32,791,152...32,879,489
Ensembl chr 4:32,789,460...32,879,489
JBrowse link
G DPYSL2 dihydropyrimidinase like 2 NOT IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:10,428,598...10,545,705
Ensembl chr14:10,427,500...10,545,703
JBrowse link
G DPYSL3 dihydropyrimidinase like 3 NOT IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:148,663,563...148,777,055
Ensembl chr 2:148,662,050...148,776,619
JBrowse link
G DPYSL4 dihydropyrimidinase like 4 NOT IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:140,497,457...140,511,740
Ensembl chr14:140,497,457...140,515,833
JBrowse link
G DPYSL5 dihydropyrimidinase like 5 NOT IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:112,155,538...112,252,963
Ensembl chr 3:112,155,541...112,252,968
JBrowse link
pyrimidine nucleobase metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RRM1 ribonucleotide reductase catalytic subunit M1 ISO orotic acid RGD PMID:10204803 RGD:5133695 NCBI chr 9:6,026,151...6,065,211
Ensembl chr 9:6,025,063...6,065,116
JBrowse link
G RRM2 ribonucleotide reductase regulatory subunit M2 ISO orotic acid RGD PMID:10204803 RGD:5133695 NCBI chr 3:126,357,198...126,367,145 JBrowse link
G TYMS thymidylate synthetase ISO 5-fluorocytosine RGD PMID:9524100 RGD:5133447 NCBI chr 6:105,642,730...105,660,279
Ensembl chr 6:105,640,031...105,660,601
JBrowse link
pyrimidine nucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UPB1 beta-ureidopropionase 1 IEA Ensembl GO_REF:0000107 NCBI chr14:49,533,208...49,561,518
Ensembl chr14:49,533,226...49,565,100
JBrowse link
pyrimidine nucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 IEA InterPro GO_REF:0000002 NCBI chr 6:164,161,439...164,197,429
Ensembl chr 6:164,162,515...164,197,379
JBrowse link
pyrimidine nucleotide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCK deoxycytidine kinase ISO (PMID:12808445) UniProtKB PMID:12808445 NCBI chr 8:67,706,661...67,736,743 JBrowse link
G ENPP3 ectonucleotide pyrophosphatase/phosphodiesterase 3 IEA Ensembl GO_REF:0000107 NCBI chr 1:31,859,180...31,932,617
Ensembl chr 1:31,859,951...31,959,879
JBrowse link
G UPP1 uridine phosphorylase 1 ISO (MGI:3584214|PMID:15772079) MGI PMID:15772079 MGI:3584214 NCBI chr18:48,418,385...48,440,414
Ensembl chr18:48,418,385...48,440,736
JBrowse link
pyrimidine ribonucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHODH dihydroorotate dehydrogenase (quinone) IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:14,942,898...14,956,000
Ensembl chr 6:14,942,933...14,956,000
JBrowse link
thiamine diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TPK1 thiamin pyrophosphokinase 1 IEA
IBA
(PMID:21873635) UniProt
InterPro
GO_Central
PMID:21873635 GO_REF:0000002, GO_REF:0000041 NCBI chr 9:112,931,370...113,305,178
Ensembl chr 9:112,931,795...113,305,178
JBrowse link
thiamine diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G THTPA thiamine triphosphatase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:75,548,430...75,553,721
Ensembl chr 7:75,545,951...75,552,904
JBrowse link
thiamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACP3 acid phosphatase 3 IEA Ensembl GO_REF:0000107 NCBI chr13:73,471,837...73,530,778
Ensembl chr13:73,471,881...73,571,052
JBrowse link
G THTPA thiamine triphosphatase IEA InterPro GO_REF:0000002 NCBI chr 7:75,548,430...75,553,721
Ensembl chr 7:75,545,951...75,552,904
JBrowse link
G TPK1 thiamin pyrophosphokinase 1 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr 9:112,931,370...113,305,178
Ensembl chr 9:112,931,795...113,305,178
JBrowse link
thymidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 4:119,931,471...120,712,461
Ensembl chr 4:119,931,458...120,712,462
JBrowse link
thymidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TK1 thymidine kinase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:3,785,997...3,794,824
Ensembl chr12:3,635,220...3,795,917
JBrowse link
G TK2 thymidine kinase 2 ISO RGD PMID:21444706 RGD:5134349 NCBI chr 6:27,226,421...27,255,645
Ensembl chr 6:27,226,425...27,255,693
JBrowse link
thymine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH6A1 aldehyde dehydrogenase 6 family member A1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:97,360,583...97,381,885
Ensembl chr 7:97,357,952...97,381,841
JBrowse link
G DPYD dihydropyrimidine dehydrogenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:119,931,471...120,712,461
Ensembl chr 4:119,931,458...120,712,462
JBrowse link
G DPYS dihydropyrimidinase ISO PMID:8307005 UniProt PMID:8307005 RGD:1624990 NCBI chr 4:32,791,152...32,879,489
Ensembl chr 4:32,789,460...32,879,489
JBrowse link
thymine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH6A1 aldehyde dehydrogenase 6 family member A1 ISO PMID:2768248 UniProt PMID:2768248 RGD:1599052 NCBI chr 7:97,360,583...97,381,885
Ensembl chr 7:97,357,952...97,381,841
JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:164,161,439...164,197,429
Ensembl chr 6:164,162,515...164,197,379
JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 IEA Ensembl GO_REF:0000107 NCBI chr14:7,565,610...7,604,464
Ensembl chr14:7,565,604...7,594,057
JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UMPS uridine monophosphate synthetase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:135,611,857...135,650,656
Ensembl chr13:135,610,058...135,650,604
JBrowse link
G UPRT uracil phosphoribosyltransferase homolog ISO RGD PMID:1476792 RGD:5132591 NCBI chr  X:60,426,955...60,448,174
Ensembl chr  X:60,426,975...60,451,480
JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 IEA UniProt GO_REF:0000041 NCBI chr 1:271,448,362...271,453,811
Ensembl chr 1:271,448,364...271,453,816
JBrowse link
G UCK2 uridine-cytidine kinase 2 IEA UniProt GO_REF:0000041 NCBI chr 4:84,838,793...84,919,231
Ensembl chr 4:84,838,802...84,919,236
JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 IEA UniProt GO_REF:0000041 NCBI chr17:62,785,419...62,796,396
Ensembl chr17:62,785,419...62,807,552
JBrowse link
G UPP1 uridine phosphorylase 1 IEA UniProt GO_REF:0000041 NCBI chr18:48,418,385...48,440,414
Ensembl chr18:48,418,385...48,440,736
JBrowse link
G UPP2 uridine phosphorylase 2 IEA UniProt GO_REF:0000041 NCBI chr15:65,088,652...65,131,739
Ensembl chr15:65,088,284...65,131,789
JBrowse link
G ZNF512B zinc finger protein 512B IEA UniProt GO_REF:0000041 NCBI chr17:62,796,583...62,807,340
Ensembl chr17:62,785,419...62,807,552
JBrowse link
uracil catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase ISS
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 4:119,931,471...120,712,461
Ensembl chr 4:119,931,458...120,712,462
JBrowse link
G DPYS dihydropyrimidinase IEA Ensembl GO_REF:0000107 NCBI chr 4:32,791,152...32,879,489
Ensembl chr 4:32,789,460...32,879,489
JBrowse link
uracil metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase ISO RGD PMID:7626590 RGD:1624989 NCBI chr 4:119,931,471...120,712,461
Ensembl chr 4:119,931,458...120,712,462
JBrowse link
G DPYS dihydropyrimidinase ISO RGD PMID:7626590, PMID:8307005 RGD:1624989, RGD:1624990 NCBI chr 4:32,791,152...32,879,489
Ensembl chr 4:32,789,460...32,879,489
JBrowse link
G TYMS thymidylate synthetase ISO RGD PMID:2043679 RGD:5133426 NCBI chr 6:105,642,730...105,660,279
Ensembl chr 6:105,640,031...105,660,601
JBrowse link
uridine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UPP1 uridine phosphorylase 1 IEA Ensembl GO_REF:0000107 NCBI chr18:48,418,385...48,440,414
Ensembl chr18:48,418,385...48,440,736
JBrowse link
G UPP2 uridine phosphorylase 2 IEA Ensembl GO_REF:0000107 NCBI chr15:65,088,652...65,131,739
Ensembl chr15:65,088,284...65,131,789
JBrowse link
uridine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UPP1 uridine phosphorylase 1 ISO (MGI:3584214|PMID:15772079) MGI PMID:15772079 MGI:3584214 NCBI chr18:48,418,385...48,440,414
Ensembl chr18:48,418,385...48,440,736
JBrowse link
UTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:111,887,017...111,914,511
Ensembl chr 3:111,887,020...111,914,495
JBrowse link
G NME1 NME/NM23 nucleoside diphosphate kinase 1 IEA InterPro GO_REF:0000002 NCBI chr12:27,416,308...27,435,044
Ensembl chr12:27,416,337...27,436,160
JBrowse link
G NME2 NME/NM23 nucleoside diphosphate kinase 2 IEA InterPro GO_REF:0000002 NCBI chr12:27,439,529...27,445,025
Ensembl chr12:27,439,260...27,445,026
JBrowse link
G NME3 NME/NM23 nucleoside diphosphate kinase 3 IEA InterPro GO_REF:0000002 NCBI chr 3:40,195,456...40,197,121
Ensembl chr 3:40,195,616...40,196,858
JBrowse link
G NME4 NME/NM23 nucleoside diphosphate kinase 4 IEA InterPro GO_REF:0000002 NCBI chr 3:41,306,167...41,321,002
Ensembl chr 3:41,306,175...41,310,312
JBrowse link
G NME5 NME/NM23 family member 5 IEA InterPro GO_REF:0000002 NCBI chr 2:140,132,871...140,168,655
Ensembl chr 2:140,128,514...140,167,893
JBrowse link
G NME6 NME/NM23 nucleoside diphosphate kinase 6 IEA InterPro GO_REF:0000002 NCBI chr13:31,048,367...31,053,285
Ensembl chr13:31,046,906...31,053,130
JBrowse link
G NME7 NME/NM23 family member 7 IEA UniProt GO_REF:0000104 NCBI chr 4:81,639,907...81,912,276
Ensembl chr 4:81,639,909...81,911,743
JBrowse link
G NME9 NME/NM23 family member 9 IEA InterPro GO_REF:0000002 NCBI chr13:79,083,604...79,114,959
Ensembl chr13:79,089,189...79,114,506
JBrowse link
UTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK3 adenylate kinase 3 IEA Ensembl GO_REF:0000107 NCBI chr 1:217,236,561...217,263,144
Ensembl chr 1:217,236,482...217,261,370
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16548
    metabolic process 10584
      nitrogen compound metabolic process 8909
        cellular nitrogen compound metabolic process 5624
          pyrimidine-containing compound metabolic process 62
            5-methylcytosine metabolic process + 3
            orotic acid metabolic process 0
            pyrimidine nucleobase metabolic process + 21
            pyrimidine nucleoside metabolic process + 12
            pyrimidine nucleotide metabolic process + 35
            pyrimidine-containing compound biosynthetic process + 31
            pyrimidine-containing compound catabolic process + 24
            thiamine diphosphate metabolic process + 2
            thiamine-containing compound metabolic process + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.