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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine-containing compound metabolic process
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Accession:GO:0072527 term browser browse the term
Definition:The chemical reactions and pathways involving a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof.
Synonyms:exact_synonym: pyrimidine and derivative metabolic process;   pyrimidine-containing compound metabolism


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'de novo' pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000008, GO_REF:0000096, MGI:2154458, MGI:4417868, MGI:4834177, MGI:6201960 NCBI chr 5:31,054,620...31,078,479
Ensembl chr 5:31,054,780...31,078,479
JBrowse link
G Cmpk1 cytidine monophosphate (UMP-CMP) kinase 1 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr 4:114,960,613...114,987,228
Ensembl chr 4:114,959,336...114,987,241
JBrowse link
G Cps1 carbamoyl-phosphate synthetase 1 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr 1:67,122,426...67,231,267
Ensembl chr 1:67,123,026...67,231,259
JBrowse link
G Dhodh dihydroorotate dehydrogenase IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:6201960 NCBI chr 8:109,593,244...109,608,699
Ensembl chr 8:109,591,343...109,608,673
JBrowse link
G Mtor mechanistic target of rapamycin kinase IDA (MGI:5469988|PMID:23429704) CACAO PMID:23429704 MGI:5469988 NCBI chr 4:148,448,582...148,557,685
Ensembl chr 4:148,448,611...148,557,683
JBrowse link
G Umps uridine monophosphate synthetase IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr16:33,954,782...33,967,038
Ensembl chr16:33,954,782...33,967,038
JBrowse link
'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Umps uridine monophosphate synthetase IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr16:33,954,782...33,967,038
Ensembl chr16:33,954,782...33,967,038
JBrowse link
5-methylcytosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tet1 tet methylcytosine dioxygenase 1 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr10:62,804,570...62,887,469
Ensembl chr10:62,804,570...62,908,996
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 3:133,463,677...133,545,136
Ensembl chr 3:133,463,679...133,545,139
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr 6:83,362,373...83,457,208
Ensembl chr 6:83,362,373...83,459,084
JBrowse link
5-methylcytosine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tet2 tet methylcytosine dioxygenase 2 IMP (MGI:5298314|PMID:21803851) MGI PMID:21803851 MGI:5298314 NCBI chr 3:133,463,677...133,545,136
Ensembl chr 3:133,463,679...133,545,139
JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine monophosphate (UMP-CMP) kinase 1 ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:6201960 NCBI chr 4:114,960,613...114,987,228
Ensembl chr 4:114,959,336...114,987,241
JBrowse link
CMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uck2 uridine-cytidine kinase 2 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr 1:167,222,895...167,285,933
Ensembl chr 1:167,222,883...167,285,320
JBrowse link
CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps cytidine 5'-triphosphate synthase IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4834177, MGI:6201960 NCBI chr 4:120,539,868...120,570,276
Ensembl chr 4:120,539,868...120,570,276
JBrowse link
G Ctps2 cytidine 5'-triphosphate synthase 2 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:162,901,268...163,034,541
Ensembl chr  X:162,901,238...163,032,508
JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr11:93,958,925...93,968,272
Ensembl chr11:93,956,979...93,968,521
JBrowse link
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr11:93,949,814...93,956,256
Ensembl chr11:93,949,814...93,956,259
JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr17:24,896,500...24,897,531
Ensembl chr17:24,896,500...24,897,522
JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr17:26,091,734...26,095,523
Ensembl chr17:26,091,734...26,095,602
JBrowse link
G Nme5 NME/NM23 family member 5 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr18:34,562,634...34,579,152
Ensembl chr18:34,562,634...34,579,115
JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr 9:109,832,722...109,842,974
Ensembl chr 9:109,832,749...109,843,116
JBrowse link
G Nme7 NME/NM23 family member 7 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr 1:164,307,524...164,437,300
Ensembl chr 1:164,304,121...164,437,725
JBrowse link
cytidine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase IMP (MGI:2656023|PMID:12692563) UniProt PMID:12692563 MGI:2656023 NCBI chr 6:122,553,809...122,564,180
Ensembl chr 6:122,553,801...122,564,180
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 IBA (MGI:6201960|PMID:21873635) GOC PMID:21873635 MGI:6201960 NCBI chr 6:122,577,792...122,603,024
Ensembl chr 6:122,577,792...122,602,444
JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2 IBA (MGI:6201960|PMID:21873635) GOC PMID:21873635 MGI:6201960 NCBI chr17:48,419,231...48,432,728
Ensembl chr17:48,419,231...48,432,930
JBrowse link
G Cda cytidine deaminase ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:4834177, MGI:6201960 NCBI chr 4:138,338,528...138,368,311
Ensembl chr 4:138,338,424...138,367,992
JBrowse link
G Cdadc1 cytidine and dCMP deaminase domain containing 1 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr14:59,559,386...59,597,985
Ensembl chr14:59,559,388...59,597,959
JBrowse link
G Pycrl pyrroline-5-carboxylate reductase-like ISO MGI GO_REF:0000008, MGI:2154458 NCBI chr15:75,916,463...75,921,560
Ensembl chr15:75,916,477...75,921,560
JBrowse link
cytosine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mapk1 mitogen-activated protein kinase 1 IDA (MGI:3510481|PMID:15284227) MGI PMID:15284227 MGI:3510481 NCBI chr16:16,983,382...17,047,453
Ensembl chr16:16,983,382...17,047,453
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 IMP (MGI:5298314|PMID:21803851) MGI PMID:21803851 MGI:5298314 NCBI chr 3:133,463,677...133,545,136
Ensembl chr 3:133,463,679...133,545,139
JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine monophosphate (UMP-CMP) kinase 1 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 4:114,960,613...114,987,228
Ensembl chr 4:114,959,336...114,987,241
JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:4834177, MGI:6201960 NCBI chr 7:127,256,959...127,260,667
Ensembl chr 7:127,256,959...127,260,709
JBrowse link
deoxycytidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dck deoxycytidine kinase ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 5:88,765,013...88,783,277
Ensembl chr 5:88,764,996...88,783,281
JBrowse link
G Tk2 thymidine kinase 2, mitochondrial ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 8:104,226,691...104,248,592
Ensembl chr 8:104,226,685...104,248,558
JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:6201960 NCBI chr12:26,469,117...26,479,837
Ensembl chr12:26,469,204...26,479,837
JBrowse link
G Dtymk deoxythymidylate kinase IDA
ISO
IBA
(MGI:77260|PMID:8845311)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:8845311, PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:6201960, MGI:77260 NCBI chr 1:93,792,576...93,802,068
Ensembl chr 1:93,792,576...93,801,934
JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 8:48,099,092...48,141,667
Ensembl chr 8:48,099,092...48,153,233
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 (soluble) IMP (MGI:3849912|PMID:19513116) BHF-UCL PMID:19513116 MGI:3849912 NCBI chr11:60,788,897...60,811,265
Ensembl chr11:60,788,104...60,811,718
JBrowse link
G Tyms thymidylate synthase ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:4834177, MGI:6201960 NCBI chr 5:30,038,546...30,073,645
Ensembl chr 5:30,058,202...30,073,617
JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr12:26,469,117...26,479,837
Ensembl chr12:26,469,204...26,479,837
JBrowse link
G Dtymk deoxythymidylate kinase IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:6201960 NCBI chr 1:93,792,576...93,802,068
Ensembl chr 1:93,792,576...93,801,934
JBrowse link
G Tbpl1 TATA box binding protein-like 1 IMP (MGI:2159505|PMID:11861477) MGI PMID:11861477 MGI:2159505 NCBI chr10:22,703,877...22,732,666
Ensembl chr10:22,703,879...22,731,938
JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT ISO (PMID:24467396) UniProtKB PMID:24467396 NCBI chr 7:127,256,959...127,260,667
Ensembl chr 7:127,256,959...127,260,709
JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine monophosphate (UMP-CMP) kinase 1 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 4:114,960,613...114,987,228
Ensembl chr 4:114,959,336...114,987,241
JBrowse link
G Cmpk2 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:6201960 NCBI chr12:26,469,117...26,479,837
Ensembl chr12:26,469,204...26,479,837
JBrowse link
G Dtymk deoxythymidylate kinase IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 1:93,792,576...93,802,068
Ensembl chr 1:93,792,576...93,801,934
JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 8:48,099,092...48,141,667
Ensembl chr 8:48,099,092...48,153,233
JBrowse link
G Dut deoxyuridine triphosphatase ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:6201960 NCBI chr 2:125,247,248...125,259,049
Ensembl chr 2:125,247,190...125,258,608
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5m 5',3'-nucleotidase, mitochondrial IDA (MGI:2388903|PMID:12234672) MGI PMID:12234672 MGI:2388903 NCBI chr11:59,847,947...59,876,533
Ensembl chr11:59,839,447...59,880,968
JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:6201960 NCBI chr 2:125,247,248...125,259,049
Ensembl chr 2:125,247,190...125,258,608
JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5',3'-nucleotidase, cytosolic IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4834177, MGI:6201960 NCBI chr11:115,490,420...115,492,070
Ensembl chr11:115,490,420...115,491,862
JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:59,847,947...59,876,533
Ensembl chr11:59,839,447...59,880,968
JBrowse link
pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps cytidine 5'-triphosphate synthase IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:120,539,868...120,570,276
Ensembl chr 4:120,539,868...120,570,276
JBrowse link
G Ctps2 cytidine 5'-triphosphate synthase 2 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:162,901,268...163,034,541
Ensembl chr  X:162,901,238...163,032,508
JBrowse link
G Umps uridine monophosphate synthetase IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr16:33,954,782...33,967,038
Ensembl chr16:33,954,782...33,967,038
JBrowse link
pyrimidine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crmp1 collapsin response mediator protein 1 NOT IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:37,242,058...37,292,163
Ensembl chr 5:37,241,940...37,292,133
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase ISO
IDA
(MGI:2657070|PMID:12651209) MGI PMID:12651209 GO_REF:0000096, MGI:2657070, MGI:4417868, MGI:4834177 NCBI chr 3:118,562,109...119,432,924
Ensembl chr 3:118,562,129...119,432,924
JBrowse link
G Dpys dihydropyrimidinase ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:4834177, MGI:6201960 NCBI chr15:39,768,485...39,857,470
Ensembl chr15:39,768,487...39,857,470
JBrowse link
G Dpysl2 dihydropyrimidinase-like 2 NOT IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr14:66,802,864...66,911,041
Ensembl chr14:66,802,864...66,868,688
JBrowse link
G Dpysl3 dihydropyrimidinase-like 3 NOT IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr18:43,320,979...43,438,286
Ensembl chr18:43,320,984...43,438,286
JBrowse link
G Dpysl4 dihydropyrimidinase-like 4 NOT IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 7:139,085,981...139,101,795
Ensembl chr 7:139,086,001...139,102,704
JBrowse link
G Dpysl5 dihydropyrimidinase-like 5 NOT IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:30,711,564...30,799,369
Ensembl chr 5:30,711,564...30,799,375
JBrowse link
pyrimidine nucleobase metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rrm1 ribonucleotide reductase M1 ISO orotic acid RGD PMID:10204803 RGD:5133695 NCBI chr 7:102,441,695...102,469,771
Ensembl chr 7:102,441,695...102,469,771
JBrowse link
G Rrm2 ribonucleotide reductase M2 ISO orotic acid RGD PMID:10204803 RGD:5133695 NCBI chr12:24,708,254...24,714,146
Ensembl chr12:24,708,241...24,714,146
JBrowse link
G Tymp thymidine phosphorylase IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr15:89,371,631...89,377,036
Ensembl chr15:89,371,931...89,377,039
JBrowse link
G Tyms thymidylate synthase ISO 5-fluorocytosine RGD PMID:9524100 RGD:5133447 NCBI chr 5:30,038,546...30,073,645
Ensembl chr 5:30,058,202...30,073,617
JBrowse link
pyrimidine nucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upb1 ureidopropionase, beta ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr10:75,406,911...75,441,679
Ensembl chr10:75,401,115...75,441,679
JBrowse link
pyrimidine nucleoside metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tymp thymidine phosphorylase ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr15:89,371,631...89,377,036
Ensembl chr15:89,371,931...89,377,039
JBrowse link
pyrimidine nucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase IEA UniProt GO_REF:0000004, MGI:1354194 NCBI chr 5:31,054,620...31,078,479
Ensembl chr 5:31,054,780...31,078,479
JBrowse link
G Cmpk1 cytidine monophosphate (UMP-CMP) kinase 1 IEA UniProt GO_REF:0000002, GO_REF:0000004, MGI:1354194, MGI:2152098 NCBI chr 4:114,960,613...114,987,228
Ensembl chr 4:114,959,336...114,987,241
JBrowse link
G Cmpk2 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial IEA UniProt GO_REF:0000004, MGI:1354194 NCBI chr12:26,469,117...26,479,837
Ensembl chr12:26,469,204...26,479,837
JBrowse link
G Ctps cytidine 5'-triphosphate synthase IEA UniProt GO_REF:0000002, GO_REF:0000004, MGI:1354194, MGI:2152098 NCBI chr 4:120,539,868...120,570,276
Ensembl chr 4:120,539,868...120,570,276
JBrowse link
G Ctps2 cytidine 5'-triphosphate synthase 2 IEA UniProt GO_REF:0000002, GO_REF:0000004, MGI:1354194, MGI:2152098 NCBI chr  X:162,901,268...163,034,541
Ensembl chr  X:162,901,238...163,032,508
JBrowse link
G Dhodh dihydroorotate dehydrogenase IEA UniProt GO_REF:0000004, MGI:1354194 NCBI chr 8:109,593,244...109,608,699
Ensembl chr 8:109,591,343...109,608,673
JBrowse link
G Umps uridine monophosphate synthetase IEA UniProt GO_REF:0000002, GO_REF:0000004, MGI:1354194, MGI:2152098 NCBI chr16:33,954,782...33,967,038
Ensembl chr16:33,954,782...33,967,038
JBrowse link
pyrimidine nucleotide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dck deoxycytidine kinase ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 5:88,765,013...88,783,277
Ensembl chr 5:88,764,996...88,783,281
JBrowse link
G Dctd dCMP deaminase IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr 8:48,099,092...48,141,667
Ensembl chr 8:48,099,092...48,153,233
JBrowse link
G Enpp3 ectonucleotide pyrophosphatase/phosphodiesterase 3 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr10:24,773,814...24,836,195
Ensembl chr10:24,772,406...24,842,823
JBrowse link
G Upp1 uridine phosphorylase 1 IMP (MGI:3584214|PMID:15772079) MGI PMID:15772079 MGI:3584214 NCBI chr11:9,118,008...9,136,170
Ensembl chr11:9,118,103...9,136,170
JBrowse link
pyrimidine ribonucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhodh dihydroorotate dehydrogenase IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 8:109,593,244...109,608,699
Ensembl chr 8:109,591,343...109,608,673
JBrowse link
thiamine diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpk1 thiamine pyrophosphokinase IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:43,339,576...43,667,792
Ensembl chr 6:43,345,001...43,666,278
JBrowse link
thiamine diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thtpa thiamine triphosphatase IDA
IBA
(MGI:3796446|PMID:18276586)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:18276586, PMID:21873635 MGI:3796446, MGI:6201960 NCBI chr14:55,094,784...55,098,995
Ensembl chr14:55,094,784...55,098,986
JBrowse link
thiamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acpp acid phosphatase, prostate IMP (MGI:3849266|PMID:18940592) UniProt PMID:18940592 MGI:3849266 NCBI chr 9:104,288,240...104,337,722
Ensembl chr 9:104,288,251...104,337,748
JBrowse link
G Thtpa thiamine triphosphatase IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr14:55,094,784...55,098,995
Ensembl chr14:55,094,784...55,098,986
JBrowse link
G Tpk1 thiamine pyrophosphokinase IDA (MGI:1350425|PMID:10567383) MGI PMID:10567383 MGI:1350425 NCBI chr 6:43,339,576...43,667,792
Ensembl chr 6:43,345,001...43,666,278
JBrowse link
thymidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 3:118,562,109...119,432,924
Ensembl chr 3:118,562,129...119,432,924
JBrowse link
thymidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tk1 thymidine kinase 1 IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:6201960 NCBI chr11:117,815,519...117,826,087
Ensembl chr11:117,815,526...117,826,092
JBrowse link
G Tk2 thymidine kinase 2, mitochondrial ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 8:104,226,691...104,248,592
Ensembl chr 8:104,226,685...104,248,558
JBrowse link
thymine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh6a1 aldehyde dehydrogenase family 6, subfamily A1 ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:4834177, MGI:6201960 NCBI chr12:84,430,717...84,451,024
Ensembl chr12:84,430,717...84,451,004
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4834177, MGI:6201960 NCBI chr 3:118,562,109...119,432,924
Ensembl chr 3:118,562,129...119,432,924
JBrowse link
G Dpys dihydropyrimidinase ISS
ISO
(MGI:5009216|PMID:8307005) BHF-UCL
MGI
PMID:8307005 GO_REF:0000096, MGI:4417868, MGI:5009216 NCBI chr15:39,768,485...39,857,470
Ensembl chr15:39,768,487...39,857,470
JBrowse link
thymine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh6a1 aldehyde dehydrogenase family 6, subfamily A1 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr12:84,430,717...84,451,024
Ensembl chr12:84,430,717...84,451,004
JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine monophosphate (UMP-CMP) kinase 1 ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:6201960 NCBI chr 4:114,960,613...114,987,228
Ensembl chr 4:114,959,336...114,987,241
JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr14:69,337,151...69,366,742
Ensembl chr14:69,337,174...69,367,270
JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr19:43,689,689...43,733,853
Ensembl chr19:43,689,672...43,733,697
JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Umps uridine monophosphate synthetase ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:4834177, MGI:6201960 NCBI chr16:33,954,782...33,967,038
Ensembl chr16:33,954,782...33,967,038
JBrowse link
G Uprt uracil phosphoribosyltransferase ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr  X:104,482,803...104,512,223
Ensembl chr  X:104,482,818...104,507,490
JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uck2 uridine-cytidine kinase 2 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr 1:167,222,895...167,285,933
Ensembl chr 1:167,222,883...167,285,320
JBrowse link
uracil catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4834177, MGI:6201960 NCBI chr 3:118,562,109...119,432,924
Ensembl chr 3:118,562,129...119,432,924
JBrowse link
G Dpys dihydropyrimidinase ISS
ISO
(MGI:5009216|PMID:8307005) BHF-UCL
MGI
PMID:8307005 GO_REF:0000096, MGI:4417868, MGI:4834177, MGI:5009216 NCBI chr15:39,768,485...39,857,470
Ensembl chr15:39,768,487...39,857,470
JBrowse link
uracil metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 3:118,562,109...119,432,924
Ensembl chr 3:118,562,129...119,432,924
JBrowse link
G Dpys dihydropyrimidinase ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr15:39,768,485...39,857,470
Ensembl chr15:39,768,487...39,857,470
JBrowse link
G Tyms thymidylate synthase ISO RGD PMID:2043679 RGD:5133426 NCBI chr 5:30,038,546...30,073,645
Ensembl chr 5:30,058,202...30,073,617
JBrowse link
uridine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upp1 uridine phosphorylase 1 IDA
ISO
(MGI:5476603|PMID:23355744), (MGI:73237|PMID:7744869) CACAO
MGI
PMID:7744869, PMID:23355744 GO_REF:0000096, MGI:4834177, MGI:5476603, MGI:73237 NCBI chr11:9,118,008...9,136,170
Ensembl chr11:9,118,103...9,136,170
JBrowse link
G Upp2 uridine phosphorylase 2 ISO
IDA
(MGI:2683856|PMID:14715930) MGI
UniProt
PMID:14715930 GO_REF:0000096, MGI:2683856, MGI:4834177 NCBI chr 2:58,566,317...58,795,846
Ensembl chr 2:58,567,298...58,792,971
JBrowse link
uridine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upp1 uridine phosphorylase 1 IMP (MGI:3584214|PMID:15772079) MGI PMID:15772079 MGI:3584214 NCBI chr11:9,118,008...9,136,170
Ensembl chr11:9,118,103...9,136,170
JBrowse link
UTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:6201960 NCBI chr 5:31,054,620...31,078,479
Ensembl chr 5:31,054,780...31,078,479
JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr11:93,958,925...93,968,272
Ensembl chr11:93,956,979...93,968,521
JBrowse link
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr11:93,949,814...93,956,256
Ensembl chr11:93,949,814...93,956,259
JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr17:24,896,500...24,897,531
Ensembl chr17:24,896,500...24,897,522
JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr17:26,091,734...26,095,523
Ensembl chr17:26,091,734...26,095,602
JBrowse link
G Nme5 NME/NM23 family member 5 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr18:34,562,634...34,579,152
Ensembl chr18:34,562,634...34,579,115
JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr 9:109,832,722...109,842,974
Ensembl chr 9:109,832,749...109,843,116
JBrowse link
G Nme7 NME/NM23 family member 7 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr 1:164,307,524...164,437,300
Ensembl chr 1:164,304,121...164,437,725
JBrowse link
UTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak3 adenylate kinase 3 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr19:28,995,053...29,048,080
Ensembl chr19:29,020,833...29,047,961
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23386
    metabolic process 11305
      nitrogen compound metabolic process 9366
        cellular nitrogen compound metabolic process 5988
          pyrimidine-containing compound metabolic process 61
            5-methylcytosine metabolic process + 3
            orotic acid metabolic process 0
            pyrimidine nucleobase metabolic process + 22
            pyrimidine nucleoside metabolic process + 14
            pyrimidine nucleotide metabolic process + 31
            pyrimidine-containing compound biosynthetic process + 25
            pyrimidine-containing compound catabolic process + 26
            thiamine diphosphate metabolic process + 2
            thiamine-containing compound metabolic process + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.