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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine-containing compound metabolic process
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Accession:GO:0072527 term browser browse the term
Definition:The chemical reactions and pathways involving a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof.
Synonyms:exact_synonym: pyrimidine and derivative metabolic process;   pyrimidine-containing compound metabolism


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'de novo' CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 IEA UniProtKB GO_REF:0000041 NCBI chr15:2,067,767...2,093,014
Ensembl chr15:2,067,763...2,093,014
JBrowse link
G CTPS2 CTP synthase 2 IEA UniProtKB GO_REF:0000041 NCBI chr  X:12,759,998...12,867,707
Ensembl chr  X:12,760,015...12,865,111
JBrowse link
'de novo' pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase IBA
IEA
(PMID:21873635) GO_Central
InterPro
Ensembl
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr17:21,198,839...21,221,897
Ensembl chr17:21,197,826...21,221,635
JBrowse link
G CMPK1 cytidine/uridine monophosphate kinase 1 IEA InterPro GO_REF:0000002 NCBI chr15:13,324,235...13,357,387
Ensembl chr15:13,326,185...13,358,152
JBrowse link
G CPS1 carbamoyl-phosphate synthase 1 IEA InterPro GO_REF:0000002 NCBI chr37:18,308,164...18,428,487
Ensembl chr37:18,143,986...18,427,697
JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 5:77,756,411...77,766,207
Ensembl chr 5:77,756,407...77,774,090
JBrowse link
G MTOR mechanistic target of rapamycin kinase IEA Ensembl GO_REF:0000107 NCBI chr 2:84,818,893...84,939,283
Ensembl chr 2:84,787,708...84,939,114
JBrowse link
G UMPS uridine monophosphate synthetase IEA InterPro GO_REF:0000002 NCBI chr33:27,754,592...27,782,517
Ensembl chr33:27,754,643...27,782,514
JBrowse link
'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase IEA UniProt GO_REF:0000041 NCBI chr17:21,198,839...21,221,897
Ensembl chr17:21,197,826...21,221,635
JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) IEA UniProt GO_REF:0000041 NCBI chr 5:77,756,411...77,766,207
Ensembl chr 5:77,756,407...77,774,090
JBrowse link
G UMPS uridine monophosphate synthetase IEA UniProt GO_REF:0000041 NCBI chr33:27,754,592...27,782,517
Ensembl chr33:27,754,643...27,782,514
JBrowse link
5-methylcytosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TET1 tet methylcytosine dioxygenase 1 IEA UniProt GO_REF:0000104 NCBI chr 4:19,759,661...19,898,345
Ensembl chr 4:19,768,137...19,889,907
JBrowse link
G TET2 tet methylcytosine dioxygenase 2 IEA UniProt GO_REF:0000104 NCBI chr32:26,021,745...26,145,109
Ensembl chr32:26,059,693...26,143,536
JBrowse link
G TET3 tet methylcytosine dioxygenase 3 IEA UniProt GO_REF:0000104 NCBI chr17:48,976,510...49,083,454
Ensembl chr17:48,981,558...49,082,675
JBrowse link
5-methylcytosine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TET2 tet methylcytosine dioxygenase 2 ISO (MGI:5298314|PMID:21803851) MGI PMID:21803851 MGI:5298314 NCBI chr32:26,021,745...26,145,109
Ensembl chr32:26,059,693...26,143,536
JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:13,324,235...13,357,387
Ensembl chr15:13,326,185...13,358,152
JBrowse link
CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:2,067,767...2,093,014
Ensembl chr15:2,067,763...2,093,014
JBrowse link
G CTPS2 CTP synthase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:12,759,998...12,867,707
Ensembl chr  X:12,760,015...12,865,111
JBrowse link
G LOC483943 nucleoside diphosphate kinase A pseudogene IEA InterPro GO_REF:0000002 NCBI chr 1:10,046,217...10,046,745 JBrowse link
G NME1 non-metastatic cells 1, protein (NM23A) expressed in IEA InterPro GO_REF:0000002 NCBI chr 9:26,990,336...26,998,895
Ensembl chr 9:26,990,469...26,998,955
JBrowse link
G NME2 non-metastatic cells 2, protein (NM23B) expressed in IEA InterPro GO_REF:0000002 NCBI chr 9:27,002,114...27,005,740
Ensembl chr 9:27,001,733...27,015,934
JBrowse link
G NME4 NME/NM23 nucleoside diphosphate kinase 4 IEA InterPro GO_REF:0000002 NCBI chr 6:40,119,443...40,122,418 JBrowse link
G NME5 NME/NM23 family member 5 IEA InterPro GO_REF:0000002 NCBI chr11:25,772,162...25,792,856
Ensembl chr11:25,772,157...25,792,176
JBrowse link
G NME6 NME/NM23 nucleoside diphosphate kinase 6 IEA InterPro GO_REF:0000002 NCBI chr20:40,769,394...40,778,802
Ensembl chr20:40,769,501...40,776,496
JBrowse link
G NME7 NME/NM23 family member 7 IEA UniProt GO_REF:0000104 NCBI chr 7:29,201,273...29,464,072
Ensembl chr 7:29,206,307...29,463,467
JBrowse link
G NME9 NME/NM23 family member 9 IEA InterPro GO_REF:0000002 NCBI chr23:34,515,003...34,537,386
Ensembl chr23:34,483,520...34,537,312
JBrowse link
CTP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 IEA UniProt GO_REF:0000041 NCBI chr 9:52,609,972...52,615,655
Ensembl chr 9:52,609,313...52,614,622
JBrowse link
G UCK2 uridine-cytidine kinase 2 IEA UniProt GO_REF:0000041 NCBI chr38:17,475,789...17,555,926
Ensembl chr38:17,479,558...17,579,675
JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 IEA UniProt GO_REF:0000041 NCBI chr24:47,412,520...47,423,222
Ensembl chr24:47,412,521...47,432,860
JBrowse link
G ZNF512B zinc finger protein 512B IEA UniProt GO_REF:0000041 NCBI chr24:47,423,699...47,434,114
Ensembl chr24:47,412,521...47,432,860
JBrowse link
cytidine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase ISS
IEA
UniProtKB
GOC
GO_REF:0000024, GO_REF:0000108 NCBI chr27:37,064,107...37,073,791
Ensembl chr27:37,064,080...37,073,789
JBrowse link
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 IEA GOC GO_REF:0000108 NCBI chr27:37,102,728...37,114,084
Ensembl chr27:37,103,016...37,114,556
JBrowse link
G APOBEC2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 IEA GOC GO_REF:0000108 NCBI chr12:9,808,276...9,819,973
Ensembl chr12:9,808,297...9,819,985
JBrowse link
G APOBEC3Z1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3Z1 IEA GOC GO_REF:0000108
G APOBEC3Z3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3Z3 IEA GOC GO_REF:0000108 NCBI chr10:25,910,973...25,917,508
Ensembl chr10:25,911,291...25,913,808
JBrowse link
G CDA cytidine deaminase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:78,305,328...78,327,229
Ensembl chr 2:78,304,726...78,327,247
JBrowse link
G CDADC1 cytidine and dCMP deaminase domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr22:2,443,459...2,489,147
Ensembl chr22:2,436,206...2,489,016
JBrowse link
cytosine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAPK1 mitogen-activated protein kinase 1 IEA Ensembl GO_REF:0000107 NCBI chr26:31,013,607...31,132,998
Ensembl chr26:31,013,607...31,132,998
JBrowse link
G TET2 tet methylcytosine dioxygenase 2 ISO (MGI:5298314|PMID:21803851) MGI PMID:21803851 MGI:5298314 NCBI chr32:26,021,745...26,145,109
Ensembl chr32:26,059,693...26,143,536
JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:192455 RGD:5133256 NCBI chr15:13,324,235...13,357,387
Ensembl chr15:13,326,185...13,358,152
JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:17,679,681...17,683,644
Ensembl chr 6:17,679,722...17,683,570
JBrowse link
deoxycytidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCK deoxycytidine kinase ISO RGD PMID:7686601, PMID:8305745 RGD:2300395, RGD:2300398 NCBI chr13:60,206,742...60,236,338
Ensembl chr13:60,205,937...60,235,678
JBrowse link
G TK2 thymidine kinase 2 ISO RGD PMID:21444706 RGD:5134349 NCBI chr 5:82,730,514...82,758,153
Ensembl chr 5:82,729,150...82,756,457
JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chr17:4,466,615...4,478,546 JBrowse link
G DTYMK deoxythymidylate kinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:51,520,307...51,535,407
Ensembl chr25:51,520,581...51,526,069
JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTD dCMP deaminase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:47,350,493...47,376,184
Ensembl chr16:47,350,357...47,375,127
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:41,221,531...41,248,653
Ensembl chr 5:41,221,562...41,253,166
JBrowse link
G TYMS thymidylate synthetase IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 7:67,487,927...67,497,747
Ensembl chr 7:67,487,927...67,497,747
JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DTYMK deoxythymidylate kinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:51,520,307...51,535,407
Ensembl chr25:51,520,581...51,526,069
JBrowse link
G TBPL1 TATA-box binding protein like 1 ISO (MGI:2159505|PMID:11861477) MGI PMID:11861477 MGI:2159505 NCBI chr 1:26,898,344...26,938,452
Ensembl chr 1:26,899,859...26,936,995
JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 NOT ISO (PMID:24467396) UniProtKB PMID:24467396 NCBI chr 6:17,679,681...17,683,644
Ensembl chr 6:17,679,722...17,683,570
JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chr15:13,324,235...13,357,387
Ensembl chr15:13,326,185...13,358,152
JBrowse link
G CMPK2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chr17:4,466,615...4,478,546 JBrowse link
G DTYMK deoxythymidylate kinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:51,520,307...51,535,407
Ensembl chr25:51,520,581...51,526,069
JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTD dCMP deaminase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:47,350,493...47,376,184
Ensembl chr16:47,350,357...47,375,127
JBrowse link
G DUT deoxyuridine triphosphatase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000041 NCBI chr30:14,572,766...14,585,621
Ensembl chr30:14,572,602...14,585,530
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5M 5',3'-nucleotidase, mitochondrial IEA Ensembl GO_REF:0000107 NCBI chr 5:42,080,654...42,117,919
Ensembl chr 5:42,080,645...42,117,741
JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr30:14,572,766...14,585,621
Ensembl chr30:14,572,602...14,585,530
JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:5,342,793...5,344,432
Ensembl chr 9:5,343,378...5,344,380
JBrowse link
G NT5M 5',3'-nucleotidase, mitochondrial IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:42,080,654...42,117,919
Ensembl chr 5:42,080,645...42,117,741
JBrowse link
pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:2,067,767...2,093,014
Ensembl chr15:2,067,763...2,093,014
JBrowse link
G CTPS2 CTP synthase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:12,759,998...12,867,707
Ensembl chr  X:12,760,015...12,865,111
JBrowse link
G UMPS uridine monophosphate synthetase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr33:27,754,592...27,782,517
Ensembl chr33:27,754,643...27,782,514
JBrowse link
pyrimidine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRMP1 collapsin response mediator protein 1 NOT IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:71,009,382...71,077,814
Ensembl chr 3:71,010,299...71,082,216
JBrowse link
G DPYD dihydropyrimidine dehydrogenase ISO (MGI:2657070|PMID:12651209)
(PMID:11988088)
RGD
MGI
UniProtKB
PMID:1629785, PMID:11988088, PMID:12651209 MGI:2657070, RGD:1599794 NCBI chr 6:51,789,786...52,564,802
Ensembl chr 6:51,814,573...52,580,923
JBrowse link
G DPYS dihydropyrimidinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:5,583,795...5,659,355
Ensembl chr13:5,583,801...5,659,463
JBrowse link
G DPYSL2 dihydropyrimidinase like 2 NOT IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:30,900,347...31,038,256
Ensembl chr25:30,903,253...31,038,144
JBrowse link
G DPYSL3 dihydropyrimidinase like 3 NOT IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:41,687,725...41,809,402
Ensembl chr 2:41,690,845...41,802,376
JBrowse link
G DPYSL4 dihydropyrimidinase like 4 NOT IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:40,171,461...40,185,910
Ensembl chr28:40,171,239...40,185,481
JBrowse link
G DPYSL5 dihydropyrimidinase like 5 NOT IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:20,852,000...20,948,841
Ensembl chr17:20,895,134...20,946,055
JBrowse link
pyrimidine nucleobase metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RRM1 ribonucleotide reductase catalytic subunit M1 ISO orotic acid RGD PMID:10204803 RGD:5133695 NCBI chr21:26,595,838...26,631,476
Ensembl chr21:26,595,914...26,631,135
JBrowse link
G RRM2 ribonucleotide reductase regulatory subunit M2 ISO orotic acid RGD PMID:10204803 RGD:5133695 NCBI chr17:7,106,515...7,113,868
Ensembl chr17:7,104,961...7,122,939
JBrowse link
G TYMS thymidylate synthetase ISO 5-fluorocytosine RGD PMID:9524100 RGD:5133447 NCBI chr 7:67,487,927...67,497,747
Ensembl chr 7:67,487,927...67,497,747
JBrowse link
pyrimidine nucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UPB1 beta-ureidopropionase 1 IEA Ensembl GO_REF:0000107 NCBI chr26:28,194,968...28,225,977
Ensembl chr26:28,195,081...28,225,567
JBrowse link
pyrimidine nucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 IEA UniProt GO_REF:0000104 NCBI chr15:13,324,235...13,357,387
Ensembl chr15:13,326,185...13,358,152
JBrowse link
pyrimidine nucleotide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCK deoxycytidine kinase IEA Ensembl GO_REF:0000107 NCBI chr13:60,206,742...60,236,338
Ensembl chr13:60,205,937...60,235,678
JBrowse link
G ENPP3 ectonucleotide pyrophosphatase/phosphodiesterase 3 IEA Ensembl GO_REF:0000107 NCBI chr12:97,426...195,939
Ensembl chr12:97,483...182,082
JBrowse link
G LOC100856638 uridine phosphorylase 1-like ISO (MGI:3584214|PMID:15772079) MGI PMID:15772079 MGI:3584214
pyrimidine ribonucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHODH dihydroorotate dehydrogenase (quinone) IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:77,756,411...77,766,207
Ensembl chr 5:77,756,407...77,774,090
JBrowse link
thiamine diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TPK1 thiamin pyrophosphokinase 1 IEA
IBA
(PMID:21873635) UniProtKB
InterPro
GO_Central
PMID:21873635 GO_REF:0000002, GO_REF:0000041 NCBI chr16:5,257,749...5,588,179
Ensembl chr16:5,257,205...5,636,153
JBrowse link
thiamine diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G THTPA thiamine triphosphatase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:3,781,931...3,785,093
Ensembl chr 8:3,782,163...3,785,394
JBrowse link
thiamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACP3 acid phosphatase 3 ISS
IEA
UniProtKB
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr23:29,294,641...29,353,970
Ensembl chr23:29,294,843...29,343,499
JBrowse link
G THTPA thiamine triphosphatase IEA InterPro GO_REF:0000002 NCBI chr 8:3,781,931...3,785,093
Ensembl chr 8:3,782,163...3,785,394
JBrowse link
G TPK1 thiamin pyrophosphokinase 1 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr16:5,257,749...5,588,179
Ensembl chr16:5,257,205...5,636,153
JBrowse link
thymidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC609048 dihydrofolate reductase ISO (PMID:21876188) UniProtKB PMID:21876188 NCBI chr19:16,731,187...16,731,854 JBrowse link
thymidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase IEA Ensembl GO_REF:0000107 NCBI chr 6:51,789,786...52,564,802
Ensembl chr 6:51,814,573...52,580,923
JBrowse link
thymidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TK1 thymidine kinase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:2,959,450...2,970,908
Ensembl chr 9:2,959,488...2,971,064
JBrowse link
G TK2 thymidine kinase 2 ISO RGD PMID:21444706 RGD:5134349 NCBI chr 5:82,730,514...82,758,153
Ensembl chr 5:82,729,150...82,756,457
JBrowse link
thymine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH6A1 aldehyde dehydrogenase 6 family member A1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:47,280,872...47,304,460
Ensembl chr 8:47,282,235...47,304,283
JBrowse link
G DPYD dihydropyrimidine dehydrogenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:51,789,786...52,564,802
Ensembl chr 6:51,814,573...52,580,923
JBrowse link
G DPYS dihydropyrimidinase ISO PMID:8307005 UniProt PMID:8307005 RGD:1624990 NCBI chr13:5,583,795...5,659,355
Ensembl chr13:5,583,801...5,659,463
JBrowse link
thymine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH6A1 aldehyde dehydrogenase 6 family member A1 ISO PMID:2768248 UniProt PMID:2768248 RGD:1599052 NCBI chr 8:47,280,872...47,304,460
Ensembl chr 8:47,282,235...47,304,283
JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:13,324,235...13,357,387
Ensembl chr15:13,326,185...13,358,152
JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 IEA Ensembl GO_REF:0000107 NCBI chr25:34,032,104...34,067,772
Ensembl chr25:34,032,055...34,063,281
JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UMPS uridine monophosphate synthetase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr33:27,754,592...27,782,517
Ensembl chr33:27,754,643...27,782,514
JBrowse link
G UPRT uracil phosphoribosyltransferase homolog ISO RGD PMID:1476792 RGD:5132591 NCBI chr  X:58,570,623...58,576,980
Ensembl chr  X:58,543,425...58,575,926
JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 IEA UniProt GO_REF:0000041 NCBI chr 9:52,609,972...52,615,655
Ensembl chr 9:52,609,313...52,614,622
JBrowse link
G UCK2 uridine-cytidine kinase 2 IEA UniProt GO_REF:0000041 NCBI chr38:17,475,789...17,555,926
Ensembl chr38:17,479,558...17,579,675
JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 IEA UniProt GO_REF:0000041 NCBI chr24:47,412,520...47,423,222
Ensembl chr24:47,412,521...47,432,860
JBrowse link
G ZNF512B zinc finger protein 512B IEA UniProt GO_REF:0000041 NCBI chr24:47,423,699...47,434,114
Ensembl chr24:47,412,521...47,432,860
JBrowse link
uracil catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:51,789,786...52,564,802
Ensembl chr 6:51,814,573...52,580,923
JBrowse link
G DPYS dihydropyrimidinase IEA Ensembl GO_REF:0000107 NCBI chr13:5,583,795...5,659,355
Ensembl chr13:5,583,801...5,659,463
JBrowse link
uracil metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase ISO RGD PMID:7626590 RGD:1624989 NCBI chr 6:51,789,786...52,564,802
Ensembl chr 6:51,814,573...52,580,923
JBrowse link
G DPYS dihydropyrimidinase ISO RGD PMID:7626590, PMID:8307005 RGD:1624989, RGD:1624990 NCBI chr13:5,583,795...5,659,355
Ensembl chr13:5,583,801...5,659,463
JBrowse link
G TYMS thymidylate synthetase ISO RGD PMID:2043679 RGD:5133426 NCBI chr 7:67,487,927...67,497,747
Ensembl chr 7:67,487,927...67,497,747
JBrowse link
uridine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100856638 uridine phosphorylase 1-like ISO (PMID:7488099)
(MGI:5476603|PMID:23355744), (MGI:73237|PMID:7744869)
UniProt
CACAO
PMID:7488099, PMID:7744869, PMID:23355744 MGI:5476603, MGI:73237
uridine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100856638 uridine phosphorylase 1-like ISO (MGI:3584214|PMID:15772079) MGI PMID:15772079 MGI:3584214
UTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:21,198,839...21,221,897
Ensembl chr17:21,197,826...21,221,635
JBrowse link
G LOC483943 nucleoside diphosphate kinase A pseudogene IEA InterPro GO_REF:0000002 NCBI chr 1:10,046,217...10,046,745 JBrowse link
G NME1 non-metastatic cells 1, protein (NM23A) expressed in IEA InterPro GO_REF:0000002 NCBI chr 9:26,990,336...26,998,895
Ensembl chr 9:26,990,469...26,998,955
JBrowse link
G NME2 non-metastatic cells 2, protein (NM23B) expressed in IEA InterPro GO_REF:0000002 NCBI chr 9:27,002,114...27,005,740
Ensembl chr 9:27,001,733...27,015,934
JBrowse link
G NME4 NME/NM23 nucleoside diphosphate kinase 4 IEA InterPro GO_REF:0000002 NCBI chr 6:40,119,443...40,122,418 JBrowse link
G NME5 NME/NM23 family member 5 IEA InterPro GO_REF:0000002 NCBI chr11:25,772,162...25,792,856
Ensembl chr11:25,772,157...25,792,176
JBrowse link
G NME6 NME/NM23 nucleoside diphosphate kinase 6 IEA InterPro GO_REF:0000002 NCBI chr20:40,769,394...40,778,802
Ensembl chr20:40,769,501...40,776,496
JBrowse link
G NME7 NME/NM23 family member 7 IEA UniProt GO_REF:0000104 NCBI chr 7:29,201,273...29,464,072
Ensembl chr 7:29,206,307...29,463,467
JBrowse link
G NME9 NME/NM23 family member 9 IEA InterPro GO_REF:0000002 NCBI chr23:34,515,003...34,537,386
Ensembl chr23:34,483,520...34,537,312
JBrowse link
UTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC480491 GTP:AMP phosphotransferase AK3, mitochondrial ISO (PMID:11485571) BHF-UCL PMID:11485571 NCBI chr 9:10,282,452...10,283,479 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16190
    metabolic process 10657
      nitrogen compound metabolic process 8990
        cellular nitrogen compound metabolic process 5703
          pyrimidine-containing compound metabolic process 64
            5-methylcytosine metabolic process + 3
            orotic acid metabolic process 0
            pyrimidine nucleobase metabolic process + 21
            pyrimidine nucleoside metabolic process + 14
            pyrimidine nucleotide metabolic process + 34
            pyrimidine-containing compound biosynthetic process + 30
            pyrimidine-containing compound catabolic process + 25
            thiamine diphosphate metabolic process + 2
            thiamine-containing compound metabolic process + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.