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ONTOLOGY REPORT - ANNOTATIONS

Term:epithelial tube formation
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Accession:GO:0072175 term browser browse the term
Definition:The developmental process pertaining to the initial formation of an epithelial tube.

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show annotations for term's descendants           Sort by:
epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Podxl podocalyxin like involved_in ISO (PMID:15814834) UniProt PMID:15814834 NCBI chrNW_004936579:3,960,338...3,970,925 JBrowse link
anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp3 caspase 3 acts_upstream_of_or_within ISO (PMID:21515572) MGI PMID:21515572 NCBI chrNW_004936554:4,571,072...4,593,765 JBrowse link
G Folr1 folate receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:1,489,916...1,497,200
Ensembl chrNW_004936498:1,491,547...1,497,226 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21515572) Ensembl
MGI		 PMID:21515572 GO_REF:0000107 NCBI chrNW_004936470:41,856,683...41,961,666
Ensembl chrNW_004936470:41,859,035...42,002,844 		JBrowse link
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1 like acts_upstream_of_or_within ISO (PMID:26787558) MGI PMID:26787558 NCBI chrNW_004936619:448,304...592,981
Ensembl chrNW_004936619:448,303...593,001 		JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) MGI PMID:17565372 NCBI chrNW_004936596:1,958,961...2,074,471
Ensembl chrNW_004936596:1,958,844...2,074,707 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:8622765) MGI PMID:8622765 NCBI chrNW_004936534:2,481,804...2,518,573
Ensembl chrNW_004936534:2,481,806...2,499,317 		JBrowse link
embryonic epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ret ret proto-oncogene involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15569713) Ensembl
MGI		 PMID:15569713 GO_REF:0000107 NCBI chrNW_004936617:2,927,185...2,980,594
Ensembl chrNW_004936617:2,927,155...2,980,602 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15569713) Ensembl
MGI		 PMID:15569713 GO_REF:0000107 NCBI chrNW_004936629:114,175...168,697
Ensembl chrNW_004936629:114,850...167,505 		JBrowse link
G Wnt4 Wnt family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16546160) Ensembl
MGI		 PMID:16546160 GO_REF:0000107 NCBI chrNW_004936474:7,623,462...7,635,416
Ensembl chrNW_004936474:7,623,463...7,635,664 		JBrowse link
embryonic heart tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11076684) Ensembl
MGI		 PMID:11076684 GO_REF:0000107 NCBI chrNW_004936515:8,289,764...8,292,937
Ensembl chrNW_004936515:8,289,315...8,293,175 		JBrowse link
establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18606138) Ensembl
MGI		 PMID:18606138 GO_REF:0000107 NCBI chrNW_004936470:40,381,215...40,392,105
Ensembl chrNW_004936470:40,377,835...40,392,225 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:18606138) MGI PMID:18606138 NCBI chrNW_004936740:228,377...242,318
Ensembl chrNW_004936740:228,317...242,601 		JBrowse link
initiation of neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm2b lysine demethylase 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:2,771,420...2,897,694
Ensembl chrNW_004936558:2,771,420...2,897,292 		JBrowse link
mesonephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20040500) Ensembl
MGI		 PMID:20040500 GO_REF:0000107 NCBI chrNW_004936490:649,551...702,448
Ensembl chrNW_004936490:649,546...702,672 		JBrowse link
G Wnt9b Wnt family member 9B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16054034) Ensembl
MGI		 PMID:16054034 GO_REF:0000107 NCBI chrNW_004936541:1,899,039...1,939,561
Ensembl chrNW_004936541:1,899,039...1,939,561 		JBrowse link
mesonephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004936600:4,850,594...4,939,010
Ensembl chrNW_004936600:4,850,552...4,928,214 		JBrowse link
G Six1 SIX homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:4,839,496...4,842,906
Ensembl chrNW_004936495:4,838,051...4,842,994 		JBrowse link
metanephric nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (MGI:3704067|PMID:17314325) UniProt PMID:17314325 MGI:3704067 NCBI chrNW_004936600:4,850,594...4,939,010
Ensembl chrNW_004936600:4,850,552...4,928,214 		JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,523,658...1,553,464
Ensembl chrNW_004936783:1,523,661...1,576,568 		JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21212101) Ensembl
MGI		 PMID:21212101 GO_REF:0000107 NCBI chrNW_004936501:128,386...132,648
Ensembl chrNW_004936501:127,703...132,704 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21212101) Ensembl
MGI		 PMID:21212101 GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648
Ensembl chrNW_004936655:1,847,272...1,852,705 		JBrowse link
metanephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt4 Wnt family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21350016) Ensembl
MGI		 PMID:21350016 GO_REF:0000107 NCBI chrNW_004936474:7,623,462...7,635,416
Ensembl chrNW_004936474:7,623,463...7,635,664 		JBrowse link
G Wnt9b Wnt family member 9B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21350016) Ensembl
MGI		 PMID:21350016 GO_REF:0000107 NCBI chrNW_004936541:1,899,039...1,939,561
Ensembl chrNW_004936541:1,899,039...1,939,561 		JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966 		JBrowse link
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966 		JBrowse link
negative regulation of planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19056682) MGI PMID:19056682 NCBI chrNW_004936587:5,065,200...5,143,029
Ensembl chrNW_004936587:4,978,043...5,140,191 		JBrowse link
nephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468 		JBrowse link
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966 		JBrowse link
G Hnf1b HNF1 homeobox B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19913010) Ensembl
MGI		 PMID:19913010 GO_REF:0000107 NCBI chrNW_004936490:649,551...702,448
Ensembl chrNW_004936490:649,546...702,672 		JBrowse link
G Pax2 paired box 2 involved_in ISO (MGI:2445273|PMID:12435636) UniProt PMID:12435636 MGI:2445273 NCBI chrNW_004936600:4,850,594...4,939,010
Ensembl chrNW_004936600:4,850,552...4,928,214 		JBrowse link
nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17537789) Ensembl
MGI		 PMID:17537789 GO_REF:0000107 NCBI chrNW_004936473:29,999,542...30,034,610
Ensembl chrNW_004936473:29,999,562...30,038,293 		JBrowse link
G Wnt6 Wnt family member 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11948913) Ensembl
MGI		 PMID:11948913 GO_REF:0000107 NCBI chrNW_004936569:1,290,061...1,302,672
Ensembl chrNW_004936569:1,290,052...1,302,691 		JBrowse link
neural fold bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Luzp1 leucine zipper protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18801334) Ensembl
MGI
TreeGrafter		 PMID:18801334 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:8,320,284...8,413,919
Ensembl chrNW_004936474:8,324,076...8,328,829 		JBrowse link
neural fold elevation formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:5,350,870...5,464,561
Ensembl chrNW_004936476:5,350,870...5,464,354 		JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:71,965...143,940
Ensembl chrNW_004936530:71,920...143,940 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10328919) Ensembl
MGI		 PMID:10328919 GO_REF:0000107 NCBI chrNW_004936495:5,770,988...5,816,157
Ensembl chrNW_004936495:5,770,669...5,816,157 		JBrowse link
neural fold formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfl1 cofilin 1 acts_upstream_of_or_within ISO (PMID:15649475) MGI PMID:15649475 NCBI chrNW_004936599:3,678,724...3,682,314
Ensembl chrNW_004936599:3,677,804...3,682,307 		JBrowse link
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) MGI PMID:17565372 NCBI chrNW_004936596:1,958,961...2,074,471
Ensembl chrNW_004936596:1,958,844...2,074,707 		JBrowse link
G LOC101956240 cat eye syndrome critical region protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21246654) Ensembl
MGI		 PMID:21246654 GO_REF:0000107 NCBI chrNW_004936807:498,491...542,503
Ensembl chrNW_004936807:498,789...542,008 		JBrowse link
G Nodal nodal growth differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11311163) Ensembl
MGI		 PMID:11311163 GO_REF:0000107 NCBI chrNW_004936521:8,171,146...8,178,802
Ensembl chrNW_004936521:8,171,146...8,178,705 		JBrowse link
G Ovol2 ovo like zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16423343) Ensembl
MGI		 PMID:16423343 GO_REF:0000107 NCBI chrNW_004936485:2,096,495...2,128,002
Ensembl chrNW_004936485:2,096,495...2,128,540 		JBrowse link
neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9883720) Ensembl
MGI		 PMID:9883720 GO_REF:0000107 NCBI chrNW_004936487:17,690,206...17,819,619
Ensembl chrNW_004936487:17,690,968...17,819,669 		JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (PMID:9883720) MGI PMID:9883720 NCBI chrNW_004936481:9,823,790...9,847,291
Ensembl chrNW_004936481:9,824,392...9,847,104 		JBrowse link
G Adm adrenomedullin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16981008) Ensembl
MGI		 PMID:16981008 GO_REF:0000107 NCBI chrNW_004936528:8,005,223...8,007,586
Ensembl chrNW_004936528:8,005,189...8,007,643 		JBrowse link
G Alx1 ALX homeobox 1 acts_upstream_of_or_within ISO (PMID:8673125) MGI PMID:8673125 NCBI chrNW_004936507:2,775,752...2,797,065
Ensembl chrNW_004936507:2,775,752...2,797,062 		JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11504943), (PMID:9216040) Ensembl
MGI		 PMID:9216040 PMID:11504943 GO_REF:0000107 NCBI chrNW_004936492:14,818,561...14,902,231
Ensembl chrNW_004936492:14,816,623...14,902,132 		JBrowse link
G Arhgap35 Rho GTPase activating protein 35 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11044403) Ensembl
MGI		 PMID:11044403 GO_REF:0000107 NCBI chrNW_004936664:714,036...788,584
Ensembl chrNW_004936664:713,984...789,344 		JBrowse link
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO (PMID:23129809) MGI PMID:23129809 NCBI chrNW_004936474:11,148,857...11,197,312 JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16170314) Ensembl
MGI		 PMID:16170314 GO_REF:0000107 NCBI chrNW_004936471:31,962,500...32,019,516
Ensembl chrNW_004936471:31,962,336...32,020,712 		JBrowse link
G Bcl10 BCL10 immune signaling adaptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936608:434,740...442,162
Ensembl chrNW_004936608:434,978...442,391 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19850029) Ensembl
MGI		 PMID:19850029 GO_REF:0000107 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468 		JBrowse link
G Brd2 bromodomain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19362612) Ensembl
MGI		 PMID:19362612 GO_REF:0000107 NCBI chrNW_004936476:25,807,179...25,818,914
Ensembl chrNW_004936476:25,807,163...25,818,899 		JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24947469) Ensembl
MGI		 PMID:24947469 GO_REF:0000107 NCBI chrNW_004936477:12,315,829...12,415,915
Ensembl chrNW_004936477:12,315,799...12,408,603 		JBrowse link
G Cdk20 cyclin dependent kinase 20 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28817564) Ensembl
MGI		 PMID:28817564 GO_REF:0000107 NCBI chrNW_004936854:810,996...817,136
Ensembl chrNW_004936854:812,575...817,202 		JBrowse link
G Celsr1 cadherin EGF LAG seven-pass G-type receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17229766) Ensembl
MGI		 PMID:17229766 GO_REF:0000107 NCBI chrNW_004936629:3,453,384...3,570,250
Ensembl chrNW_004936629:3,455,887...3,568,566 		JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12149478) Ensembl
MGI		 PMID:12149478 GO_REF:0000107 NCBI chrNW_004936560:6,353,901...6,356,749
Ensembl chrNW_004936560:6,354,338...6,356,735 		JBrowse link
G Cluap1 clusterin associated protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23742838) Ensembl
MGI		 PMID:23742838 GO_REF:0000107 NCBI chrNW_004936694:779,399...810,534
Ensembl chrNW_004936694:780,197...810,457 		JBrowse link
G Cobl cordon-bleu WH2 repeat protein acts_upstream_of_or_within ISO (PMID:14512015) MGI PMID:14512015 NCBI chrNW_004936686:621,502...872,824 JBrowse link
G Deaf1 DEAF1 transcription factor involved_in ISO (MGI:3029622|PMID:14966286) UniProt PMID:14966286 MGI:3029622 NCBI chrNW_004936888:473,651...497,152
Ensembl chrNW_004936888:473,974...497,158 		JBrowse link
G Dlc1 DLC1 Rho GTPase activating protein acts_upstream_of_or_within ISO (PMID:15710412) MGI PMID:15710412 NCBI chrNW_004936573:2,493,051...2,658,396
Ensembl chrNW_004936573:2,492,875...2,658,714 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12421720) Ensembl
MGI		 PMID:12421720 GO_REF:0000107 NCBI chrNW_004936595:520,299...528,361
Ensembl chrNW_004936595:520,548...528,371 		JBrowse link
G Enah ENAH actin regulator acts_upstream_of_or_within ISO (PMID:15371503)
(PMID:10069337)		 MGI PMID:10069337 PMID:15371503 NCBI chrNW_004936526:2,332,344...2,477,827
Ensembl chrNW_004936526:2,332,664...2,477,833 		JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19877275) Ensembl
MGI		 PMID:19877275 GO_REF:0000107 NCBI chrNW_004936664:3,596,764...3,601,676
Ensembl chrNW_004936664:3,596,952...3,601,342 		JBrowse link
G Fzd3 frizzled class receptor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16495441) Ensembl
MGI		 PMID:16495441 GO_REF:0000107 NCBI chrNW_004936675:1,275,500...1,334,878
Ensembl chrNW_004936675:1,275,470...1,333,540 		JBrowse link
G Fzd6 frizzled class receptor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16495441) Ensembl
MGI		 PMID:16495441 GO_REF:0000107 NCBI chrNW_004936470:40,416,254...40,454,717
Ensembl chrNW_004936470:40,416,014...40,454,062 		JBrowse link
G Glmn glomulin, FKBP associated protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22405651) Ensembl
MGI		 PMID:22405651 GO_REF:0000107 NCBI chrNW_004936537:6,778,317...6,827,384
Ensembl chrNW_004936537:6,777,965...6,829,881 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21262862) Ensembl
MGI		 PMID:21262862 GO_REF:0000107 NCBI chrNW_004936470:41,856,683...41,961,666
Ensembl chrNW_004936470:41,859,035...42,002,844 		JBrowse link
G Grhl3 grainyhead like transcription factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:9,321,754...9,354,486
Ensembl chrNW_004936474:9,332,444...9,353,893 		JBrowse link
G Hectd1 HECT domain E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:3714713|PMID:17442300)
(PMID:15755804), (PMID:9636176)		 UniProt
MGI		 PMID:9636176 PMID:15755804 PMID:17442300 MGI:3714713 NCBI chrNW_004936494:5,761,801...5,853,673
Ensembl chrNW_004936494:5,758,347...5,851,952 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chrNW_004936602:908,034...956,634
Ensembl chrNW_004936602:905,486...956,521 		JBrowse link
G Ift172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18930042) Ensembl
MGI		 PMID:18930042 GO_REF:0000107 NCBI chrNW_004936493:5,108,437...5,145,160
Ensembl chrNW_004936493:5,108,437...5,145,160 		JBrowse link
G Ift57 intraflagellar transport 57 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17027958) Ensembl
MGI		 PMID:17027958 GO_REF:0000107 NCBI chrNW_004936645:1,471,393...1,524,193
Ensembl chrNW_004936645:1,468,375...1,524,238 		JBrowse link
G Kat2a lysine acetyltransferase 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17325035) Ensembl
MGI		 PMID:17325035 GO_REF:0000107 NCBI chrNW_004936490:16,952,698...16,960,424
Ensembl chrNW_004936490:16,952,363...16,960,489 		JBrowse link
G Kdm2a lysine demethylase 2A acts_upstream_of_or_within ISO (PMID:25463925) MGI PMID:25463925 NCBI chrNW_004936599:2,466,427...2,576,623
Ensembl chrNW_004936599:2,466,214...2,576,623 		JBrowse link
G Kdm6a lysine demethylase 6A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22949634) Ensembl
MGI		 PMID:22949634 GO_REF:0000107 NCBI chrNW_004936502:10,980,303...11,196,711
Ensembl chrNW_004936502:10,980,118...11,196,163 		JBrowse link
G Kif20b kinesin family member 20B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15755804) Ensembl
MGI		 PMID:15755804 GO_REF:0000107 NCBI chrNW_004936601:4,457,142...4,517,693
Ensembl chrNW_004936601:4,456,724...4,516,135 		JBrowse link
G Lhx2 LIM homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11719201) Ensembl
MGI		 PMID:11719201 GO_REF:0000107 NCBI chrNW_004936487:12,395,817...12,413,860
Ensembl chrNW_004936487:12,395,812...12,414,003 		JBrowse link
G Lias lipoic acid synthetase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15755804) Ensembl
MGI		 PMID:15755804 GO_REF:0000107 NCBI chrNW_004936482:7,068,326...7,085,571
Ensembl chrNW_004936482:7,068,445...7,084,504 		JBrowse link
G Lmo4 LIM domain only 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15691703)
(PMID:14966285)		 Ensembl
MGI		 PMID:14966285 PMID:15691703 GO_REF:0000107 NCBI chrNW_004936732:1,541,511...1,557,845
Ensembl chrNW_004936732:1,541,515...1,555,735 		JBrowse link
G LOC101956240 cat eye syndrome critical region protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20589882)
(PMID:21246654)
(PMID:15640247)		 Ensembl
MGI		 PMID:15640247 PMID:20589882 PMID:21246654 GO_REF:0000107 NCBI chrNW_004936807:498,491...542,503
Ensembl chrNW_004936807:498,789...542,008 		JBrowse link
G LOC101973767 vasodilator stimulated phosphoprotein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15371503) TreeGrafter
MGI		 PMID:15371503 GO_REF:0000118 NCBI chrNW_004936706:1,923,172...1,945,046
Ensembl chrNW_004936706:1,923,602...1,928,630 		JBrowse link
G Lrp2 LDL receptor related protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:10,245,001...10,438,933
Ensembl chrNW_004936469:10,244,881...10,438,935 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of
acts_upstream_of_or_within		 ISO (PMID:19056682)
(PMID:15469977)
(PMID:10545599)
(PMID:19795512)
(PMID:19653321)		 MGI PMID:10545599 PMID:15469977 PMID:19056682 PMID:19653321 PMID:19795512 MGI:61254 NCBI chrNW_004936587:5,065,200...5,143,029
Ensembl chrNW_004936587:4,978,043...5,140,191 		JBrowse link
G Med12 mediator complex subunit 12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20630950) Ensembl
MGI		 PMID:20630950 GO_REF:0000107 NCBI chrNW_004936762:460,342...483,264
Ensembl chrNW_004936762:460,342...483,195 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23454480)
(PMID:19776033)		 Ensembl
MGI		 PMID:19776033 PMID:23454480 GO_REF:0000107 NCBI chrNW_004936490:4,865,243...4,876,601
Ensembl chrNW_004936490:4,865,243...4,878,912 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:8,100,977...8,170,244
Ensembl chrNW_004936495:8,100,912...8,171,800 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:3,877,423...4,060,129
Ensembl chrNW_004936489:3,876,680...4,051,933 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase acts_upstream_of
involved_in		 ISO
IEA		 (PMID:25855017), (PMID:29222906) BHF-UCL
Ensembl		 PMID:25855017 PMID:29222906 GO_REF:0000107 NCBI chrNW_004936474:623,438...637,849
Ensembl chrNW_004936474:623,291...638,193 		JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004936509:11,525,764...11,624,833
Ensembl chrNW_004936509:11,524,556...11,624,621 		JBrowse link
G Nog noggin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16712836) Ensembl
MGI		 PMID:16712836 GO_REF:0000107 NCBI chrNW_004936490:6,262,651...6,264,069
Ensembl chrNW_004936490:6,262,785...6,263,483 		JBrowse link
G Opa1 OPA1 mitochondrial dynamin like GTPase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15755804) Ensembl
MGI		 PMID:15755804 GO_REF:0000107 NCBI chrNW_004936711:1,027,531...1,113,796
Ensembl chrNW_004936711:1,032,935...1,106,847 		JBrowse link
G Pax2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chrNW_004936600:4,850,594...4,939,010
Ensembl chrNW_004936600:4,850,552...4,928,214 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO (PMID:15384171) MGI PMID:15384171 NCBI chrNW_004936569:4,215,513...4,307,815
Ensembl chrNW_004936569:4,216,900...4,307,815 		JBrowse link
G Pfn1 profilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10069337) Ensembl
MGI		 PMID:10069337 GO_REF:0000107 NCBI chrNW_004936677:2,762,971...2,766,038
Ensembl chrNW_004936677:2,762,971...2,766,149 		JBrowse link
G Phactr4 phosphatase and actin regulator 4 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936474:12,517,800...12,613,170
Ensembl chrNW_004936474:12,517,765...12,614,968 		JBrowse link
G Plxnb2 plexin B2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:521,981...539,475
Ensembl chrNW_004936629:525,649...538,743 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:1,165,159...1,270,138
Ensembl chrNW_004936512:1,163,615...1,270,255 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22007132) Ensembl
MGI		 PMID:22007132 GO_REF:0000107 NCBI chrNW_004936659:2,750,015...2,765,914
Ensembl chrNW_004936659:2,750,537...2,765,753 		JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22007132) Ensembl
MGI		 PMID:22007132 GO_REF:0000107 NCBI chrNW_004936608:1,353,905...1,464,636
Ensembl chrNW_004936608:1,353,897...1,464,636 		JBrowse link
G Ptch1 patched 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9262482) Ensembl
MGI		 PMID:9262482 GO_REF:0000107 NCBI chrNW_004936626:4,241,993...4,301,919
Ensembl chrNW_004936626:4,241,908...4,309,476 		JBrowse link
G Ptk7 protein tyrosine kinase 7 (inactive) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20704721)
(PMID:15229603)		 Ensembl
MGI		 PMID:15229603 PMID:20704721 GO_REF:0000107 NCBI chrNW_004936476:16,797,836...16,866,989
Ensembl chrNW_004936476:16,798,686...16,866,896 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in
acts_upstream_of_or_within		 ISO (MGI:69552|PMID:7720556)
(PMID:9636176)		 UniProt
MGI		 PMID:7720556 PMID:9636176 MGI:69552 NCBI chrNW_004936476:4,095,829...4,127,714
Ensembl chrNW_004936476:4,095,329...4,127,701 		JBrowse link
G Rala RAS like proto-oncogene A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:15,167,651...15,186,594
Ensembl chrNW_004936478:15,167,751...15,186,633 		JBrowse link
G Rara retinoic acid receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7607067) Ensembl
MGI		 PMID:7607067 GO_REF:0000107 NCBI chrNW_004936490:15,376,217...15,420,638
Ensembl chrNW_004936490:15,376,205...15,421,611 		JBrowse link
G Rarg retinoic acid receptor gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7607067) Ensembl
MGI		 PMID:7607067 GO_REF:0000107 NCBI chrNW_004936512:10,502,954...10,524,796
Ensembl chrNW_004936512:10,500,622...10,524,824 		JBrowse link
G Rgma repulsive guidance molecule BMP co-receptor a involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14749425) Ensembl
MGI		 PMID:14749425 GO_REF:0000107 NCBI chrNW_004936483:9,753,112...9,792,817
Ensembl chrNW_004936483:9,766,275...9,793,001 		JBrowse link
G Rock2 Rho associated coiled-coil containing protein kinase 2 acts_upstream_of_or_within ISO (PMID:17229766) MGI PMID:17229766 NCBI chrNW_004936532:7,142,580...7,284,722
Ensembl chrNW_004936532:7,145,882...7,286,244 		JBrowse link
G Rps7 ribosomal protein S7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15384171) Ensembl
MGI		 PMID:15384171 GO_REF:0000107 NCBI chrNW_004936532:1,734,993...1,740,202
Ensembl chrNW_004936532:1,734,983...1,742,151 		JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (PMID:16790473) MGI PMID:16790473 NCBI chrNW_004936475:4,106,663...4,121,356
Ensembl chrNW_004936475:4,106,084...4,121,413 		JBrowse link
G Sall4 spalt like transcription factor 4 acts_upstream_of_or_within ISO (PMID:16790473) MGI PMID:16790473 NCBI chrNW_004936514:3,285,778...3,302,179
Ensembl chrNW_004936514:3,285,531...3,303,644 		JBrowse link
G Scrib scribble planar cell polarity protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21515572)
(PMID:20643356)		 Ensembl
MGI		 PMID:20643356 PMID:21515572 GO_REF:0000107 NCBI chrNW_004936470:8,349,175...8,370,099
Ensembl chrNW_004936470:8,349,188...8,369,864 		JBrowse link
G Sdc4 syndecan 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23760952) Ensembl
MGI		 PMID:23760952 GO_REF:0000107 NCBI chrNW_004936514:7,528,538...7,562,391
Ensembl chrNW_004936514:7,555,685...7,562,391 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19966784)
(PMID:20215345)		 Ensembl
MGI		 PMID:19966784 PMID:20215345 GO_REF:0000107 NCBI chrNW_004936563:676,564...772,877
Ensembl chrNW_004936563:712,029...772,101 		JBrowse link
G Sema4c semaphorin 4C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936744:794,127...804,618
Ensembl chrNW_004936744:793,898...804,642 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20133625) Ensembl
MGI		 PMID:20133625 GO_REF:0000107 NCBI chrNW_004936596:795,940...898,823
Ensembl chrNW_004936596:796,601...883,373 		JBrowse link
G Sfrp1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19850029) Ensembl
MGI		 PMID:19850029 GO_REF:0000107 NCBI chrNW_004936785:1,276,478...1,320,397
Ensembl chrNW_004936785:1,276,420...1,321,017 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19850029) Ensembl
MGI		 PMID:19850029 GO_REF:0000107 NCBI chrNW_004936576:604,174...612,440
Ensembl chrNW_004936576:604,069...613,021 		JBrowse link
G Shroom3 shroom family member 3 acts_upstream_of_or_within ISO (PMID:16249236) MGI PMID:16249236 NCBI chrNW_004936676:533,654...703,549
Ensembl chrNW_004936676:409,926...703,839 		JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:9284043) MGI PMID:9284043 NCBI chrNW_004936737:1,223,653...1,274,664
Ensembl chrNW_004936737:1,222,341...1,276,631 		JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19592578) Ensembl
MGI		 PMID:19592578 GO_REF:0000107 NCBI chrNW_004936471:4,238,883...4,251,291
Ensembl chrNW_004936471:4,238,845...4,251,350 		JBrowse link
G Spint2 serine peptidase inhibitor, Kunitz type 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19592578) Ensembl
MGI		 PMID:19592578 GO_REF:0000107 NCBI chrNW_004936801:1,041,946...1,069,617
Ensembl chrNW_004936801:1,041,708...1,069,776 		JBrowse link
G St14 ST14 transmembrane serine protease matriptase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19592578) Ensembl
MGI		 PMID:19592578 GO_REF:0000107 NCBI chrNW_004936572:2,137,820...2,182,674
Ensembl chrNW_004936572:2,137,332...2,182,742 		JBrowse link
G Stil STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chrNW_004936474:28,079,114...28,131,214
Ensembl chrNW_004936474:28,079,492...28,131,198 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16155214) Ensembl
MGI		 PMID:16155214 GO_REF:0000107 NCBI chrNW_004936600:3,270,662...3,381,722
Ensembl chrNW_004936600:3,268,260...3,381,781 		JBrowse link
G Tbxt T-box transcription factor T involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16835439) Ensembl
MGI		 PMID:16835439 GO_REF:0000107 NCBI chrNW_004936489:16,027,359...16,035,041
Ensembl chrNW_004936489:16,027,359...16,035,041 		JBrowse link
G Tead2 TEA domain transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17868131) Ensembl
MGI		 PMID:17868131 GO_REF:0000107 NCBI chrNW_004936664:3,242,815...3,257,649
Ensembl chrNW_004936664:3,242,974...3,255,856 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:8622766), (PMID:9811866) MGI PMID:8622766 PMID:9811866 NCBI chrNW_004936534:2,481,804...2,518,573
Ensembl chrNW_004936534:2,481,806...2,499,317 		JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:3,742,080...3,758,266
Ensembl chrNW_004936661:3,742,066...3,758,272 		JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in ISO (MGI:894212|PMID:9217007) BHF-UCL PMID:9217007 MGI:894212 NCBI chrNW_004936628:310,720...394,002
Ensembl chrNW_004936628:308,691...394,007 		JBrowse link
G Tgif1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (PMID:17082251) MGI PMID:17082251 NCBI chrNW_004936672:1,128,104...1,135,844
Ensembl chrNW_004936672:1,128,108...1,136,292 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20178780) Ensembl
MGI		 PMID:20178780 GO_REF:0000107 NCBI chrNW_004936558:1,223,114...1,258,699
Ensembl chrNW_004936558:1,223,114...1,231,479 		JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936533:1,857,685...1,874,973
Ensembl chrNW_004936533:1,857,666...1,876,120 		JBrowse link
G Trim71 tripartite motif containing 71 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19098426) Ensembl
MGI		 PMID:19098426 GO_REF:0000107 NCBI chrNW_004936473:23,223,984...23,290,177
Ensembl chrNW_004936473:23,224,588...23,290,169 		JBrowse link
G Tsc1 TSC complex subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11438694) Ensembl
MGI		 PMID:11438694 GO_REF:0000107 NCBI chrNW_004936487:19,331,183...19,386,841
Ensembl chrNW_004936487:19,331,194...19,386,892 		JBrowse link
G Tsc2 TSC complex subunit 2 acts_upstream_of_or_within ISO (PMID:10096549) MGI PMID:10096549 NCBI chrNW_004936694:1,958,152...1,993,373
Ensembl chrNW_004936694:1,958,154...1,993,363 		JBrowse link
G Tulp3 TUB like protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19223390) Ensembl
MGI		 PMID:19223390 GO_REF:0000107 NCBI chrNW_004936606:3,209,170...3,278,809
Ensembl chrNW_004936606:3,209,141...3,278,563 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7729687) Ensembl
MGI		 PMID:7729687 GO_REF:0000107 NCBI chrNW_004936546:5,331,220...5,332,669
Ensembl chrNW_004936546:5,331,863...5,332,555 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:14512015)
(PMID:17229766)
(PMID:11709546), (PMID:12499390)
(PMID:17433286)
(PMID:15229603)
(PMID:19966784)
(PMID:23760952)
(PMID:21246654)		 MGI PMID:11709546 PMID:12499390 PMID:14512015 PMID:15229603 PMID:17229766 More... NCBI chrNW_004936740:228,377...242,318
Ensembl chrNW_004936740:228,317...242,601 		JBrowse link
G Wdr83 WD repeat domain 83 acts_upstream_of_or_within ISO (PMID:37509073) MGI PMID:37509073 NCBI chrNW_004936659:1,796,030...1,803,714
Ensembl chrNW_004936659:1,796,067...1,803,683 		JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19795512)
(PMID:17433286)		 Ensembl
MGI		 PMID:17433286 PMID:19795512 GO_REF:0000107 NCBI chrNW_004936473:6,031,627...6,052,211
Ensembl chrNW_004936473:6,029,976...6,052,159 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (PMID:16598713) MGI PMID:16598713 NCBI chrNW_004936469:32,240,730...32,372,413
Ensembl chrNW_004936469:32,240,835...32,371,267 		JBrowse link
G Zic2 Zic family member 2 acts_upstream_of_or_within ISO (PMID:15384171) MGI PMID:15384171 NCBI chrNW_004936472:10,599,717...10,605,187
Ensembl chrNW_004936472:10,602,102...10,605,191 		JBrowse link
G Zic5 Zic family member 5 acts_upstream_of_or_within ISO (PMID:15136147) MGI PMID:15136147 NCBI chrNW_004936472:10,615,843...10,623,221
Ensembl chrNW_004936472:10,616,122...10,622,338 		JBrowse link
neural tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brpf1 bromodomain and PHD finger containing 1 acts_upstream_of_or_within ISO (PMID:27528195) MGI PMID:27528195 NCBI chrNW_004936602:3,419,873...3,436,119
Ensembl chrNW_004936602:3,420,445...3,436,119 		JBrowse link
G Casp8 caspase 8 acts_upstream_of_or_within ISO (PMID:12404118) MGI PMID:12404118 NCBI chrNW_004936726:554,627...596,334
Ensembl chrNW_004936726:554,758...595,922 		JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11694877) Ensembl
MGI		 PMID:11694877 GO_REF:0000107 NCBI chrNW_004936560:6,353,901...6,356,749
Ensembl chrNW_004936560:6,354,338...6,356,735 		JBrowse link
G Coq7 coenzyme Q7, hydroxylase acts_upstream_of_or_within ISO (PMID:11716496) MGI PMID:11716496 NCBI chrNW_004936501:5,035,986...5,043,864
Ensembl chrNW_004936501:5,034,224...5,043,909 		JBrowse link
G Ift172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14603322) Ensembl
MGI		 PMID:14603322 GO_REF:0000107 NCBI chrNW_004936493:5,108,437...5,145,160
Ensembl chrNW_004936493:5,108,437...5,145,160 		JBrowse link
G Ift52 intraflagellar transport 52 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15930098) Ensembl
MGI		 PMID:15930098 GO_REF:0000107 NCBI chrNW_004936530:2,965,587...3,003,758
Ensembl chrNW_004936530:2,967,533...3,003,980 		JBrowse link
G Ipmk inositol polyphosphate multikinase acts_upstream_of_or_within ISO (PMID:15939867) MGI PMID:15939867 NCBI chrNW_004936614:4,724,935...4,772,373
Ensembl chrNW_004936614:4,725,250...4,772,153 		JBrowse link
G Map3k7 mitogen-activated protein kinase kinase kinase 7 acts_upstream_of_or_within ISO (PMID:16260493) MGI PMID:16260493 NCBI chrNW_004936510:1,772,971...1,836,075
Ensembl chrNW_004936510:1,772,971...1,837,765 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16000382) Ensembl
MGI		 PMID:16000382 GO_REF:0000107 NCBI chrNW_004936550:1,439,652...1,577,804
Ensembl chrNW_004936550:1,439,646...1,573,637 		JBrowse link
G Nup50 nucleoporin 50 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10891500) Ensembl
MGI		 PMID:10891500 GO_REF:0000107 NCBI chrNW_004936629:4,499,105...4,511,437
Ensembl chrNW_004936629:4,496,720...4,511,399 		JBrowse link
G Ptch1 patched 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936626:4,241,993...4,301,919
Ensembl chrNW_004936626:4,241,908...4,309,476 		JBrowse link
G Shh sonic hedgehog signaling molecule ISO RGD PMID:8124714 RGD:69996 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599 		JBrowse link
G Stk3 serine/threonine kinase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19786569) Ensembl
MGI		 PMID:19786569 GO_REF:0000107 NCBI chrNW_004936470:44,159,449...44,436,295
Ensembl chrNW_004936470:44,159,419...44,436,330 		JBrowse link
G Stk4 serine/threonine kinase 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19786569) Ensembl
MGI		 PMID:19786569 GO_REF:0000107 NCBI chrNW_004936514:7,686,760...7,784,948
Ensembl chrNW_004936514:7,686,087...7,785,025 		JBrowse link
G Tctn1 tectonic family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16357211) Ensembl
MGI		 PMID:16357211 GO_REF:0000107 NCBI chrNW_004936558:3,552,909...3,581,212
Ensembl chrNW_004936558:3,552,864...3,581,368 		JBrowse link
G Tulp3 TUB like protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11406614) Ensembl
MGI		 PMID:11406614 GO_REF:0000107 NCBI chrNW_004936606:3,209,170...3,278,809
Ensembl chrNW_004936606:3,209,141...3,278,563 		JBrowse link
otic vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14623822) Ensembl
MGI		 PMID:14623822 GO_REF:0000107 NCBI chrNW_004936480:18,114,231...18,195,884
Ensembl chrNW_004936480:18,114,204...18,195,898 		JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO (PMID:17601531) MGI PMID:17601531 NCBI chrNW_004936599:868,634...875,464
Ensembl chrNW_004936599:868,634...875,464 		JBrowse link
G Fgf8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17601531) Ensembl
MGI		 PMID:17601531 GO_REF:0000107 NCBI chrNW_004936600:4,004,847...4,010,626
Ensembl chrNW_004936600:4,004,824...4,010,689 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:9435295) MGI PMID:9435295 NCBI chrNW_004936486:10,506,680...10,606,272
Ensembl chrNW_004936486:10,507,097...10,602,019 		JBrowse link
G Hesx1 HESX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9620767) Ensembl
MGI		 PMID:9620767 GO_REF:0000107 NCBI chrNW_004936473:7,545,982...7,572,222
Ensembl chrNW_004936473:7,545,839...7,548,013 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18377888) Ensembl
MGI		 PMID:18377888 GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648
Ensembl chrNW_004936655:1,847,272...1,852,705 		JBrowse link
G Tcap titin-cap involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:14,856,433...14,857,692
Ensembl chrNW_004936490:14,856,433...14,857,722 		JBrowse link
planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr1 cadherin EGF LAG seven-pass G-type receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20704721) Ensembl
MGI		 PMID:20704721 GO_REF:0000107 NCBI chrNW_004936629:3,453,384...3,570,250
Ensembl chrNW_004936629:3,455,887...3,568,566 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16571627) Ensembl
MGI
TreeGrafter		 PMID:16571627 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936737:1,797,348...1,811,043
Ensembl chrNW_004936737:1,797,326...1,810,286 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16571627) Ensembl
MGI
TreeGrafter		 PMID:16571627 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936595:520,299...528,361
Ensembl chrNW_004936595:520,548...528,371 		JBrowse link
G Dvl3 dishevelled segment polarity protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19008950) TreeGrafter
MGI		 PMID:19008950 GO_REF:0000118 NCBI chrNW_004936578:5,693,433...5,710,137
Ensembl chrNW_004936578:5,693,342...5,710,143 		JBrowse link
G Fzd1 frizzled class receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20940229) Ensembl
MGI		 PMID:20940229 GO_REF:0000107 NCBI chrNW_004936621:2,899,183...2,903,427
Ensembl chrNW_004936621:2,900,995...2,902,947 		JBrowse link
G Fzd2 frizzled class receptor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20940229) Ensembl
MGI		 PMID:20940229 GO_REF:0000107 NCBI chrNW_004936541:965,135...967,018
Ensembl chrNW_004936541:965,131...966,798 		JBrowse link
G Grhl3 grainyhead like transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20643356) Ensembl
MGI		 PMID:20643356 GO_REF:0000107 NCBI chrNW_004936474:9,321,754...9,354,486
Ensembl chrNW_004936474:9,332,444...9,353,893 		JBrowse link
G Ptk7 protein tyrosine kinase 7 (inactive) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20704721) Ensembl
MGI		 PMID:20704721 GO_REF:0000107 NCBI chrNW_004936476:16,797,836...16,866,989
Ensembl chrNW_004936476:16,798,686...16,866,896 		JBrowse link
G Sfrp1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18257070) Ensembl
MGI		 PMID:18257070 GO_REF:0000107 NCBI chrNW_004936785:1,276,478...1,320,397
Ensembl chrNW_004936785:1,276,420...1,321,017 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18257070) Ensembl
MGI		 PMID:18257070 GO_REF:0000107 NCBI chrNW_004936576:604,174...612,440
Ensembl chrNW_004936576:604,069...613,021 		JBrowse link
G Sfrp5 secreted frizzled related protein 5 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chrNW_004936636:1,968,410...1,973,885
Ensembl chrNW_004936636:1,968,330...1,973,916 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:18257070)
(PMID:20643356)
(PMID:20940229)
(PMID:19008950)
(PMID:20704721)
(PMID:16571627)		 MGI PMID:16571627 PMID:18257070 PMID:19008950 PMID:20643356 PMID:20704721 More... NCBI chrNW_004936740:228,377...242,318
Ensembl chrNW_004936740:228,317...242,601 		JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19056682) Ensembl
MGI		 PMID:19056682 GO_REF:0000107 NCBI chrNW_004936473:6,031,627...6,052,211
Ensembl chrNW_004936473:6,029,976...6,052,159 		JBrowse link
positive regulation of epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg2a AFG2 AAA ATPase homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936662:1,957,364...2,207,410
Ensembl chrNW_004936662:1,886,176...1,929,097
Ensembl chrNW_004936662:1,886,176...1,929,097 		JBrowse link
G Egf epidermal growth factor involved_in ISO (PMID:31915155) BHF-UCL PMID:31915155 NCBI chrNW_004936563:1,058,803...1,181,393 JBrowse link
G Mmrn2 multimerin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936804:22,609...39,974
Ensembl chrNW_004936804:22,533...39,540 		JBrowse link
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta involved_in ISO (PMID:31915155) BHF-UCL PMID:31915155 NCBI chrNW_004936623:3,672,201...3,696,959 JBrowse link
G Vegfa vascular endothelial growth factor A involved_in ISO (PMID:31915155) BHF-UCL PMID:31915155 NCBI chrNW_004936476:16,245,134...16,261,180
Ensembl chrNW_004936476:16,247,100...16,260,673 		JBrowse link
positive regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966 		JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:4,291,391...4,310,752
Ensembl chrNW_004936518:4,288,154...4,310,753 		JBrowse link
G Six1 SIX homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:4,839,496...4,842,906
Ensembl chrNW_004936495:4,838,051...4,842,994 		JBrowse link
G Six4 SIX homeobox 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:4,887,718...4,900,198
Ensembl chrNW_004936495:4,887,718...4,900,198 		JBrowse link
regulation of establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec24b SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19966784) Ensembl
MGI		 PMID:19966784 GO_REF:0000107 NCBI chrNW_004936563:676,564...772,877
Ensembl chrNW_004936563:712,029...772,101 		JBrowse link
regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdnf glial cell derived neurotrophic factor involved_in ISO PMID:19112489 UniProt PMID:19112489 RGD:8656008 NCBI chrNW_004936518:4,291,391...4,310,752
Ensembl chrNW_004936518:4,288,154...4,310,753 		JBrowse link
roof plate formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf7 growth differentiation factor 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10693795) Ensembl
MGI		 PMID:10693795 GO_REF:0000107 NCBI chrNW_004936493:10,808,714...10,812,761
Ensembl chrNW_004936493:10,808,714...10,812,761 		JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:11,888,024...11,895,058
Ensembl chrNW_004936493:11,888,024...11,895,058 		JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936737:1,045,496...1,047,865
Ensembl chrNW_004936737:1,046,613...1,047,950 		JBrowse link
G Irx1 iroquois homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936634:3,130,197...3,135,273
Ensembl chrNW_004936634:3,130,167...3,135,537 		JBrowse link
G Irx2 iroquois homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936634:3,830,617...3,834,494
Ensembl chrNW_004936634:3,829,663...3,834,806 		JBrowse link
G Irx3 iroquois homeobox 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:6,810,678...6,813,186
Ensembl chrNW_004936475:6,810,666...6,813,192 		JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:11,888,024...11,895,058
Ensembl chrNW_004936493:11,888,024...11,895,058 		JBrowse link
ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966 		JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:4,291,391...4,310,752
Ensembl chrNW_004936518:4,288,154...4,310,753 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936673:1,394,743...1,399,726
Ensembl chrNW_004936673:1,395,757...1,396,311 		JBrowse link
G Hs2st1 heparan sulfate 2-O-sulfotransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9637690) Ensembl
MGI		 PMID:9637690 GO_REF:0000107 NCBI chrNW_004936732:1,773,043...1,947,081
Ensembl chrNW_004936732:1,773,028...1,946,696 		JBrowse link
G Nog noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:6,262,651...6,264,069
Ensembl chrNW_004936490:6,262,785...6,263,483 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15871
    developmental process 6321
      anatomical structure formation involved in morphogenesis 1232
        tube formation 180
          epithelial tube formation 167
            Malpighian tubule bud morphogenesis 0
            embryonic epithelial tube formation + 155
            endothelial tube formation 0
            mammary gland cord formation 0
            metanephric tubule formation + 6
            negative regulation of epithelial tube formation 0
            nephric duct formation + 5
            otic vesicle formation + 7
            pancreatic bud formation + 0
            positive regulation of epithelial tube formation + 9
            regulation of epithelial tube formation + 9
Path 2
Term Annotations click to browse term
  biological_process 15871
    developmental process 6321
      anatomical structure development 5953
        anatomical structure morphogenesis 2769
          tissue morphogenesis 682
            morphogenesis of an epithelium 569
              epithelial tube morphogenesis 392
                epithelial tube formation 167
                  Malpighian tubule bud morphogenesis 0
                  embryonic epithelial tube formation + 155
                  endothelial tube formation 0
                  mammary gland cord formation 0
                  metanephric tubule formation + 6
                  negative regulation of epithelial tube formation 0
                  nephric duct formation + 5
                  otic vesicle formation + 7
                  pancreatic bud formation + 0
                  positive regulation of epithelial tube formation + 9
                  regulation of epithelial tube formation + 9
paths to the root