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ONTOLOGY REPORT - ANNOTATIONS

Term:epithelial tube formation
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Accession:GO:0072175 term browser browse the term
Definition:The developmental process pertaining to the initial formation of an epithelial tube.


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epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Podxl podocalyxin-like involved_in ISO (PMID:15814834) UniProt PMID:15814834 NCBI chr 6:31,496,428...31,540,872
Ensembl chr 6:31,496,423...31,540,916 		JBrowse link
anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp3 caspase 3 acts_upstream_of_or_within IMP (MGI:5050793|PMID:21515572) MGI PMID:21515572 MGI:5050793 NCBI chr 8:47,070,326...47,092,733
Ensembl chr 8:47,070,326...47,092,724 		JBrowse link
G Folr1 folate receptor alpha involved_in IMP (MGI:3721767|PMID:17286298) BHF-UCL PMID:17286298 MGI:3721767 NCBI chr 7:101,507,551...101,519,974
Ensembl chr 7:101,507,538...101,519,995 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within IMP (MGI:5050793|PMID:21515572) MGI PMID:21515572 MGI:5050793 NCBI chr15:37,233,065...37,363,813
Ensembl chr15:37,233,280...37,363,813 		JBrowse link
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1-like acts_upstream_of_or_within IMP (MGI:6101898|PMID:26787558) MGI PMID:26787558 MGI:6101898 NCBI chr10:75,047,872...75,148,234
Ensembl chr10:75,047,905...75,148,577 		JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within IMP (MGI:3762244|PMID:17565372) MGI PMID:17565372 MGI:3762244 NCBI chr 8:70,359,719...70,450,093
Ensembl chr 8:70,359,726...70,449,034 		JBrowse link
G Tfap2a transcription factor AP-2, alpha acts_upstream_of_or_within IMP (MGI:80520|PMID:8622765) MGI PMID:8622765 MGI:80520 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
embryonic epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ret ret proto-oncogene acts_upstream_of_or_within IGI
IDA		 (MGI:3513229|PMID:15569713) MGI PMID:15569713 MGI:3513229 NCBI chr 6:118,128,709...118,174,705
Ensembl chr 6:118,128,706...118,174,679 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 acts_upstream_of_or_within IGI (MGI:3513229|PMID:15569713) MGI PMID:15569713 MGI:3513229 NCBI chr15:89,376,929...89,444,464
Ensembl chr15:89,383,826...89,444,464 		JBrowse link
G Wnt4 wingless-type MMTV integration site family, member 4 acts_upstream_of_or_within IDA (MGI:3624584|PMID:16546160) MGI PMID:16546160 MGI:3624584 NCBI chr 4:137,004,946...137,026,812
Ensembl chr 4:137,004,800...137,027,037 		JBrowse link
embryonic heart tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within IMP (MGI:1927045|PMID:11076684) MGI PMID:11076684 MGI:1927045 NCBI chr11:57,719,539...57,722,973
Ensembl chr11:57,719,531...57,723,644 		JBrowse link
establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within IGI (MGI:3814781|PMID:18606138) MGI PMID:18606138 MGI:3814781 NCBI chr15:38,940,327...38,950,516
Ensembl chr15:38,940,327...38,950,516 		JBrowse link
G Vangl2 VANGL planar cell polarity 2 acts_upstream_of_or_within IMP (MGI:3814781|PMID:18606138) MGI PMID:18606138 MGI:3814781 NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011 		JBrowse link
initiation of neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm2b lysine (K)-specific demethylase 2B involved_in IMP (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chr 5:123,008,727...123,127,333
Ensembl chr 5:123,008,728...123,127,886 		JBrowse link
mesonephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within IMP (MGI:4430439|PMID:20040500) MGI PMID:20040500 MGI:4430439 NCBI chr11:83,741,035...83,796,743
Ensembl chr11:83,740,889...83,796,645 		JBrowse link
G Mir216a microRNA 216a involved_in IMP (MGI:6359623|PMID:31367007) MGI PMID:31367007 MGI:6359623 NCBI chr11:28,707,012...28,707,083
Ensembl chr11:28,707,012...28,707,083 		JBrowse link
G Mir216b microRNA 216b involved_in IMP (MGI:6359623|PMID:31367007) MGI PMID:31367007 MGI:6359623 NCBI chr11:28,696,191...28,696,276
Ensembl chr11:28,696,191...28,696,276 		JBrowse link
G Mir217 microRNA 217 involved_in IMP (MGI:6359623|PMID:31367007) MGI PMID:31367007 MGI:6359623 NCBI chr11:28,713,728...28,713,835
Ensembl chr11:28,713,728...28,713,835 		JBrowse link
G Wnt9b wingless-type MMTV integration site family, member 9B acts_upstream_of_or_within IMP (MGI:3588895|PMID:16054034) MGI PMID:16054034 MGI:3588895 NCBI chr11:103,618,188...103,666,098
Ensembl chr11:103,618,190...103,640,647 		JBrowse link
mesonephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in IMP (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chr19:44,735,040...44,826,708
Ensembl chr19:44,744,484...44,826,310 		JBrowse link
G Six1 sine oculis-related homeobox 1 involved_in IMP (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661 		JBrowse link
metanephric nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in IMP (MGI:3704067|PMID:17314325) UniProt PMID:17314325 MGI:3704067 NCBI chr19:44,735,040...44,826,708
Ensembl chr19:44,744,484...44,826,310 		JBrowse link
G Pax8 paired box 8 involved_in IMP (MGI:3704067|PMID:17314325) UniProt PMID:17314325 MGI:3704067 NCBI chr 2:24,310,563...24,365,611
Ensembl chr 2:24,310,572...24,365,611 		JBrowse link
G Sox8 SRY (sex determining region Y)-box 8 acts_upstream_of_or_within IGI (MGI:4939090|PMID:21212101) MGI PMID:21212101 MGI:4939090 NCBI chr17:25,784,865...25,789,666
Ensembl chr17:25,784,866...25,789,660 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 acts_upstream_of_or_within IGI (MGI:4939090|PMID:21212101) MGI PMID:21212101 MGI:4939090 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
metanephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt4 wingless-type MMTV integration site family, member 4 acts_upstream_of_or_within IMP (MGI:4950307|PMID:21350016) MGI PMID:21350016 MGI:4950307 NCBI chr 4:137,004,946...137,026,812
Ensembl chr 4:137,004,800...137,027,037 		JBrowse link
G Wnt9b wingless-type MMTV integration site family, member 9B acts_upstream_of_or_within IMP (MGI:4950307|PMID:21350016) MGI PMID:21350016 MGI:4950307 NCBI chr11:103,618,188...103,666,098
Ensembl chr11:103,618,190...103,640,647 		JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IMP (MGI:3822373|PMID:19112489) UniProt PMID:19112489 MGI:3822373 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IMP (MGI:3822373|PMID:19112489) UniProt PMID:19112489 MGI:3822373 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
negative regulation of planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IGI (MGI:4830282|PMID:19056682) MGI PMID:19056682 MGI:4830282 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
nephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Gata3 GATA binding protein 3 involved_in IMP (MGI:3611949|PMID:16319112) UniProt PMID:16319112 MGI:3611949 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within IMP (MGI:4430449|PMID:19913010) MGI PMID:19913010 MGI:4430449 NCBI chr11:83,741,035...83,796,743
Ensembl chr11:83,740,889...83,796,645 		JBrowse link
G Pax2 paired box 2 involved_in IDA (MGI:2445273|PMID:12435636) UniProt PMID:12435636 MGI:2445273 NCBI chr19:44,735,040...44,826,708
Ensembl chr19:44,744,484...44,826,310 		JBrowse link
nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IMP (MGI:3714576|PMID:17537789) MGI PMID:17537789 MGI:3714576 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Wnt6 wingless-type MMTV integration site family, member 6 acts_upstream_of_or_within IDA (MGI:2178881|PMID:11948913) MGI PMID:11948913 MGI:2178881 NCBI chr 1:74,793,499...74,824,481
Ensembl chr 1:74,811,051...74,824,481 		JBrowse link
neural fold bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Luzp1 leucine zipper protein 1 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (MGI:3818102|PMID:18801334)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:18801334 PMID:21873635 MGI:3818102 MGI:6201960 NCBI chr 4:136,189,892...136,282,036
Ensembl chr 4:136,197,072...136,282,091 		JBrowse link
neural fold elevation formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 involved_in IGI (MGI:1332253|PMID:10079236) BHF-UCL PMID:10079236 MGI:1332253 NCBI chr 9:75,682,647...75,807,598
Ensembl chr 9:75,682,646...75,807,592 		JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in IGI (MGI:1332253|PMID:10079236) BHF-UCL PMID:10079236 MGI:1332253 NCBI chr 2:172,709,805...172,782,114
Ensembl chr 2:172,709,805...172,782,114 		JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit acts_upstream_of_or_within IMP (MGI:1337194|PMID:10328919) MGI PMID:10328919 MGI:1337194 NCBI chr12:73,948,098...73,994,328
Ensembl chr12:73,948,149...73,994,304 		JBrowse link
neural fold formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cecr2 CECR2, histone acetyl-lysine reader acts_upstream_of_or_within IMP (MGI:4880797|PMID:21246654) MGI PMID:21246654 MGI:4880797 NCBI chr 6:120,643,275...120,748,152
Ensembl chr 6:120,643,330...120,748,151 		JBrowse link
G Cfl1 cofilin 1, non-muscle acts_upstream_of_or_within IMP (MGI:3530675|PMID:15649475) MGI PMID:15649475 MGI:3530675 NCBI chr19:5,540,483...5,544,059
Ensembl chr19:5,540,483...5,545,229 		JBrowse link
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within IMP (MGI:3762244|PMID:17565372) MGI PMID:17565372 MGI:3762244 NCBI chr 8:70,359,719...70,450,093
Ensembl chr 8:70,359,726...70,449,034 		JBrowse link
G Nodal nodal acts_upstream_of_or_within IMP (MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:2155575 NCBI chr10:61,253,751...61,261,117
Ensembl chr10:61,253,751...61,261,117 		JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within IMP (MGI:3618450|PMID:16423343) MGI PMID:16423343 MGI:3618450 NCBI chr 2:144,147,095...144,174,000
Ensembl chr 2:144,147,095...144,174,066 		JBrowse link
neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within IGI (MGI:1327082|PMID:9883720) MGI PMID:9883720 MGI:1327082 NCBI chr 2:31,578,256...31,697,105
Ensembl chr 2:31,578,388...31,694,239 		JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within IGI (MGI:1327082|PMID:9883720) MGI PMID:9883720 MGI:1327082 NCBI chr 1:156,386,160...156,477,189
Ensembl chr 1:156,386,356...156,477,138 		JBrowse link
G Adm adrenomedullin acts_upstream_of_or_within IMP (MGI:3689296|PMID:16981008) MGI PMID:16981008 MGI:3689296 NCBI chr 7:110,226,864...110,229,027
Ensembl chr 7:110,226,868...110,229,027 		JBrowse link
G Alx1 ALX homeobox 1 acts_upstream_of_or_within IMP (MGI:81193|PMID:8673125) MGI PMID:8673125 MGI:81193 NCBI chr10:102,843,708...102,865,501
Ensembl chr10:102,834,568...102,866,076 		JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 acts_upstream_of_or_within IMP (MGI:2149166|PMID:11504943), (MGI:893797|PMID:9216040) MGI PMID:9216040 PMID:11504943 MGI:2149166 MGI:893797 NCBI chr10:90,825,173...90,918,688
Ensembl chr10:90,825,173...90,918,632 		JBrowse link
G Arhgap35 Rho GTPase activating protein 35 acts_upstream_of_or_within IMP (MGI:1926242|PMID:11044403) MGI PMID:11044403 MGI:1926242 NCBI chr 7:16,228,398...16,349,313
Ensembl chr 7:16,227,644...16,348,918 		JBrowse link
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within IMP (MGI:5466629|PMID:23129809) MGI PMID:23129809 MGI:5466629 NCBI chr 4:133,406,319...133,484,682
Ensembl chr 4:133,406,319...133,484,080 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within IMP (MGI:3607949|PMID:16170314) MGI PMID:16170314 MGI:3607949 NCBI chr 9:59,229,249...59,260,791
Ensembl chr 9:59,229,273...59,260,791 		JBrowse link
G Bcl10 B cell leukemia/lymphoma 10 involved_in IMP (MGI:1930354|PMID:11163238) UniProt PMID:11163238 MGI:1930354 NCBI chr 3:145,630,017...145,640,121
Ensembl chr 3:145,628,559...145,640,111 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IDA (MGI:4429763|PMID:19850029) MGI PMID:19850029 MGI:4429763 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Brd2 bromodomain containing 2 acts_upstream_of_or_within IMP (MGI:6120662|PMID:19362612) MGI PMID:19362612 MGI:6120662 NCBI chr17:34,330,993...34,341,581
Ensembl chr17:34,330,997...34,341,608 		JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within IMP (MGI:5696765|PMID:24947469) MGI PMID:24947469 MGI:5696765 NCBI chr 5:43,819,715...43,898,317
Ensembl chr 5:43,819,688...43,898,314 		JBrowse link
G Cdk20 cyclin dependent kinase 20 acts_upstream_of_or_within IMP (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr13:64,580,133...64,587,536
Ensembl chr13:64,580,128...64,589,587 		JBrowse link
G Cecr2 CECR2, histone acetyl-lysine reader acts_upstream_of_or_within IMP
IGI		 (MGI:3530173|PMID:15640247)
(MGI:4880797|PMID:21246654)
(MGI:4822542|PMID:20589882)		 MGI PMID:15640247 PMID:20589882 PMID:21246654 MGI:3530173 MGI:4822542 MGI:4880797 NCBI chr 6:120,643,275...120,748,152
Ensembl chr 6:120,643,330...120,748,151 		JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 involved_in
acts_upstream_of_or_within		 IMP
IGI		 (MGI:2667273|PMID:12842012)
(MGI:3703464|PMID:17229766)		 UniProt
MGI		 PMID:12842012 PMID:17229766 MGI:2667273 MGI:3703464 NCBI chr15:85,782,959...85,918,424
Ensembl chr15:85,783,130...85,918,404 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within IMP (MGI:2384266|PMID:12149478) MGI PMID:12149478 MGI:2384266 NCBI chr10:17,598,452...17,601,422
Ensembl chr10:17,598,966...17,601,422 		JBrowse link
G Cluap1 clusterin associated protein 1 acts_upstream_of_or_within IMP (MGI:5509110|PMID:23742838) MGI PMID:23742838 MGI:5509110 NCBI chr16:3,725,058...3,760,163
Ensembl chr16:3,726,665...3,759,011 		JBrowse link
G Cobl cordon-bleu WH2 repeat acts_upstream_of_or_within IGI (MGI:2676511|PMID:14512015) MGI PMID:14512015 MGI:2676511 NCBI chr11:12,186,676...12,415,022
Ensembl chr11:12,186,608...12,414,960 		JBrowse link
G Deaf1 DEAF1, transcription factor involved_in IMP (MGI:3029622|PMID:14966286) UniProt PMID:14966286 MGI:3029622 NCBI chr 7:140,877,089...140,918,758
Ensembl chr 7:140,877,093...140,907,603 		JBrowse link
G Dlc1 deleted in liver cancer 1 acts_upstream_of_or_within IMP (MGI:3529660|PMID:15710412) MGI PMID:15710412 MGI:3529660 NCBI chr 8:37,034,893...37,420,343
Ensembl chr 8:37,034,905...37,420,297 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within IMP (MGI:2389015|PMID:12421720) MGI PMID:12421720 MGI:2389015 NCBI chr11:69,891,418...69,900,935
Ensembl chr11:69,891,421...69,903,127 		JBrowse link
G Enah ENAH actin regulator acts_upstream_of_or_within IGI (MGI:1331576|PMID:10069337)
(MGI:3054149|PMID:15371503)		 MGI PMID:10069337 PMID:15371503 MGI:1331576 MGI:3054149 NCBI chr 1:181,723,949...181,848,132
Ensembl chr 1:181,723,949...181,847,555 		JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in
acts_upstream_of_or_within		 ISO
IMP		 (MGI:4367921|PMID:19877275)
(MGI:4438317|PMID:19767740), (MGI:5296277|PMID:21840926)		 MGI
UniProt		 PMID:19767740 PMID:19877275 PMID:21840926 GO_REF:0000096 MGI:4367921 MGI:4438317 MGI:4834177 MGI:5296277 NCBI chr 7:44,545,517...44,552,053
Ensembl chr 7:44,545,503...44,552,055 		JBrowse link
G Fzd3 frizzled class receptor 3 acts_upstream_of_or_within IGI (MGI:3616416|PMID:16495441) MGI PMID:16495441 MGI:3616416 NCBI chr14:65,429,890...65,499,912
Ensembl chr14:65,429,898...65,499,912 		JBrowse link
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within IGI (MGI:3616416|PMID:16495441) MGI PMID:16495441 MGI:3616416 NCBI chr15:38,869,673...38,901,587
Ensembl chr15:38,869,429...38,901,583 		JBrowse link
G Glmn glomulin, FKBP associated protein acts_upstream_of_or_within IMP (MGI:5320488|PMID:22405651) MGI PMID:22405651 MGI:5320488 NCBI chr 5:107,696,828...107,745,754
Ensembl chr 5:107,696,833...107,745,754 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 involved_in
acts_upstream_of_or_within		 IMP (MGI:4835348|PMID:20654612), (MGI:4867118|PMID:20978075)
(MGI:4947318|PMID:21262862)		 UniProt
MGI		 PMID:20654612 PMID:20978075 PMID:21262862 MGI:4835348 MGI:4867118 MGI:4947318 NCBI chr15:37,233,065...37,363,813
Ensembl chr15:37,233,280...37,363,813 		JBrowse link
G Grhl3 grainyhead like transcription factor 3 involved_in IMP (MGI:3689640|PMID:16949565), (MGI:4835348|PMID:20654612) UniProt PMID:16949565 PMID:20654612 MGI:3689640 MGI:4835348 NCBI chr 4:135,269,199...135,300,943
Ensembl chr 4:135,269,199...135,300,941 		JBrowse link
G Hectd1 HECT domain E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within		 IMP (MGI:3714713|PMID:17442300)
(MGI:1267118|PMID:9636176), (MGI:3577662|PMID:15755804)		 UniProt
MGI		 PMID:9636176 PMID:15755804 PMID:17442300 MGI:1267118 MGI:3577662 MGI:3714713 NCBI chr12:51,790,504...51,876,540
Ensembl chr12:51,790,505...51,876,319 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in IMP (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chr 6:115,830,340...115,903,660
Ensembl chr 6:115,830,431...115,903,660 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within IMP (MGI:3828200|PMID:18930042) MGI PMID:18930042 MGI:3828200 NCBI chr 5:31,410,623...31,448,458
Ensembl chr 5:31,410,621...31,448,460 		JBrowse link
G Ift57 intraflagellar transport 57 acts_upstream_of_or_within IMP (MGI:3703110|PMID:17027958) MGI PMID:17027958 MGI:3703110 NCBI chr16:49,519,657...49,585,489
Ensembl chr16:49,519,596...49,585,489 		JBrowse link
G Kat2a K(lysine) acetyltransferase 2A acts_upstream_of_or_within IMP (MGI:3709911|PMID:17325035) MGI PMID:17325035 MGI:3709911 NCBI chr11:100,595,572...100,603,293
Ensembl chr11:100,595,572...100,603,291 		JBrowse link
G Kdm2a lysine (K)-specific demethylase 2A acts_upstream_of_or_within IMP (MGI:5615026|PMID:25463925) MGI PMID:25463925 MGI:5615026 NCBI chr19:4,366,172...4,448,749
Ensembl chr19:4,364,447...4,448,313 		JBrowse link
G Kdm6a lysine (K)-specific demethylase 6A acts_upstream_of_or_within IMP (MGI:5448135|PMID:22949634) MGI PMID:22949634 MGI:5448135 NCBI chr  X:18,027,101...18,147,061
Ensembl chr  X:18,028,814...18,146,175 		JBrowse link
G Kif20b kinesin family member 20B acts_upstream_of_or_within IMP (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chr19:34,899,735...34,953,150
Ensembl chr19:34,899,761...34,953,145 		JBrowse link
G Lhx2 LIM homeobox protein 2 acts_upstream_of_or_within IMP (MGI:2154554|PMID:11719201) MGI PMID:11719201 MGI:2154554 NCBI chr 2:38,229,226...38,259,749
Ensembl chr 2:38,229,293...38,259,745 		JBrowse link
G Lias lipoic acid synthetase acts_upstream_of_or_within IMP (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chr 5:65,548,840...65,567,766
Ensembl chr 5:65,548,840...65,568,036 		JBrowse link
G Lmo4 LIM domain only 4 involved_in
acts_upstream_of_or_within		 IMP (MGI:3689640|PMID:16949565)
(MGI:3029621|PMID:14966285)
(MGI:3573996|PMID:15691703)		 UniProt
MGI		 PMID:14966285 PMID:15691703 PMID:16949565 MGI:3029621 MGI:3573996 MGI:3689640 NCBI chr 3:143,894,291...143,911,016
Ensembl chr 3:143,894,291...143,910,981 		JBrowse link
G Lrp2 low density lipoprotein receptor-related protein 2 involved_in IMP (MGI:5603707|PMID:24639464) UniProt PMID:24639464 MGI:5603707 NCBI chr 2:69,254,679...69,416,373
Ensembl chr 2:69,254,684...69,416,409 		JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IMP
IGI		 (MGI:3055483|PMID:15469977)
(MGI:1347661|PMID:10545599)
(MGI:4413396|PMID:19653321)
(MGI:4413372|PMID:19795512)		 MGI PMID:10545599 PMID:15469977 PMID:19653321 PMID:19795512 MGI:1347661 MGI:3055483 MGI:4413372 MGI:4413396 MGI:61254 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within IMP (MGI:4839483|PMID:20630950) MGI PMID:20630950 MGI:4839483 NCBI chr  X:100,317,697...100,342,540
Ensembl chr  X:100,317,636...100,341,071 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within IMP (MGI:5487695|PMID:23454480)
(MGI:4367169|PMID:19776033)		 MGI PMID:19776033 PMID:23454480 MGI:4367169 MGI:5487695 NCBI chr11:87,744,007...87,754,629
Ensembl chr11:87,744,041...87,754,629 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase involved_in IMP (MGI:5503248|PMID:23704330) BHF-UCL PMID:23704330 MGI:5503248 NCBI chr12:76,301,180...76,366,594
Ensembl chr12:76,302,072...76,366,577 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like involved_in IMP (MGI:5468075|PMID:23267094) BHF-UCL PMID:23267094 MGI:5468075 NCBI chr10:3,918,282...4,117,081
Ensembl chr10:3,923,118...4,117,081 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase acts_upstream_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:148,123,534...148,144,019
Ensembl chr 4:148,123,534...148,144,008 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within IMP (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr 2:80,330,856...80,411,526
Ensembl chr 2:80,330,856...80,411,724 		JBrowse link
G Nog noggin acts_upstream_of_or_within IMP (MGI:3640733|PMID:16712836) MGI PMID:16712836 MGI:3640733 NCBI chr11:89,191,464...89,193,385
Ensembl chr11:89,191,464...89,193,158 		JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase acts_upstream_of_or_within IMP (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chr16:29,398,099...29,481,924
Ensembl chr16:29,398,152...29,473,702 		JBrowse link
G Pax2 paired box 2 involved_in IMP (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chr19:44,735,040...44,826,708
Ensembl chr19:44,744,484...44,826,310 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within IMP (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chr 1:78,077,904...78,173,773
Ensembl chr 1:78,077,904...78,173,771 		JBrowse link
G Pfn1 profilin 1 acts_upstream_of_or_within IGI (MGI:1331576|PMID:10069337) MGI PMID:10069337 MGI:1331576 NCBI chr11:70,542,670...70,547,625
Ensembl chr11:70,542,676...70,545,470 		JBrowse link
G Phactr4 phosphatase and actin regulator 4 involved_in IMP (MGI:3719969|PMID:17609112) UniProt PMID:17609112 MGI:3719969 NCBI chr 4:132,083,233...132,149,759
Ensembl chr 4:132,083,234...132,149,800 		JBrowse link
G Plxnb2 plexin B2 involved_in IMP (MGI:3712712|PMID:17554007) UniProt PMID:17554007 MGI:3712712 NCBI chr15:89,039,752...89,064,960
Ensembl chr15:89,039,752...89,064,991 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO
IMP		 (MGI:5586584|PMID:25190059) MGI PMID:25190059 GO_REF:0000096 MGI:4834177 MGI:5586584 NCBI chr15:93,396,992...93,494,147
Ensembl chr15:93,396,995...93,493,772 		JBrowse link
G Prkaca protein kinase, cAMP dependent, catalytic, alpha acts_upstream_of_or_within IGI (MGI:5308523|PMID:22007132) MGI PMID:22007132 MGI:5308523 NCBI chr 8:84,699,607...84,723,073
Ensembl chr 8:84,699,622...84,723,072 		JBrowse link
G Prkacb protein kinase, cAMP dependent, catalytic, beta acts_upstream_of_or_within IGI (MGI:5308523|PMID:22007132) MGI PMID:22007132 MGI:5308523 NCBI chr 3:146,435,334...146,518,691
Ensembl chr 3:146,435,329...146,518,745 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within IMP (MGI:1095757|PMID:9262482) MGI PMID:9262482 MGI:1095757 NCBI chr13:63,656,142...63,721,274
Ensembl chr13:63,656,142...63,721,412 		JBrowse link
G Ptk7 PTK7 protein tyrosine kinase 7 acts_upstream_of_or_within IGI
IMP		 (MGI:3046397|PMID:15229603)
(MGI:4830023|PMID:20704721)		 MGI PMID:15229603 PMID:20704721 MGI:3046397 MGI:4830023 NCBI chr17:46,875,377...46,940,975
Ensembl chr17:46,875,397...46,940,430 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in
acts_upstream_of_or_within		 IMP (MGI:69552|PMID:7720556)
(MGI:1267118|PMID:9636176)		 UniProt
MGI		 PMID:7720556 PMID:9636176 MGI:1267118 MGI:69552 NCBI chr 1:33,758,959...33,781,645
Ensembl chr 1:33,758,968...33,781,645 		JBrowse link
G Rala v-ral simian leukemia viral oncogene A (ras related) involved_in IMP (MGI:5504565|PMID:23063435) CACAO PMID:23063435 MGI:5504565 NCBI chr13:18,055,160...18,118,802
Ensembl chr13:18,055,156...18,118,824 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within IGI (MGI:69060|PMID:7607067) MGI PMID:7607067 MGI:69060 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within IGI (MGI:69060|PMID:7607067) MGI PMID:7607067 MGI:69060 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Rgma repulsive guidance molecule family member A acts_upstream_of_or_within IMP (MGI:3027667|PMID:14749425) MGI PMID:14749425 MGI:3027667 NCBI chr 7:73,025,268...73,069,647
Ensembl chr 7:73,025,257...73,069,647 		JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 acts_upstream_of_or_within IGI (MGI:3703464|PMID:17229766) MGI PMID:17229766 MGI:3703464 NCBI chr12:16,944,808...17,038,275
Ensembl chr12:16,944,896...17,037,824 		JBrowse link
G Rps7 ribosomal protein S7 acts_upstream_of_or_within IMP (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chr12:28,680,846...28,685,952
Ensembl chr12:28,680,853...28,685,952 		JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within IGI (MGI:3698636|PMID:16790473) MGI PMID:16790473 MGI:3698636 NCBI chr 8:89,753,867...89,770,790
Ensembl chr 8:89,753,863...89,770,790 		JBrowse link
G Sall4 spalt like transcription factor 4 acts_upstream_of_or_within IMP
IGI		 (MGI:3698636|PMID:16790473) MGI PMID:16790473 MGI:3698636 NCBI chr 2:168,590,252...168,609,121
Ensembl chr 2:168,590,252...168,609,863 		JBrowse link
G Scrib scribbled planar cell polarity acts_upstream_of_or_within
involved_in		 IMP
IGI
ISO		 (MGI:4819429|PMID:20643356)
(MGI:5050793|PMID:21515572)		 MGI PMID:20643356 PMID:21515572 GO_REF:0000096 MGI:4819429 MGI:4834177 MGI:5050793 NCBI chr15:75,919,011...75,941,633
Ensembl chr15:75,919,007...75,941,633 		JBrowse link
G Sdc4 syndecan 4 acts_upstream_of_or_within IGI (MGI:5498591|PMID:23760952) MGI PMID:23760952 MGI:5498591 NCBI chr 2:164,266,167...164,285,512
Ensembl chr 2:164,266,167...164,285,807 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within IGI
IMP		 (MGI:4438817|PMID:19966784)
(MGI:4439427|PMID:20215345)		 MGI PMID:19966784 PMID:20215345 MGI:4438817 MGI:4439427 NCBI chr 3:129,776,408...129,855,248
Ensembl chr 3:129,776,408...129,855,202 		JBrowse link
G Sema4c sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C involved_in IMP (MGI:4881530|PMID:21122816) UniProt PMID:21122816 MGI:4881530 NCBI chr 1:36,587,720...36,599,780
Ensembl chr 1:36,587,720...36,597,430 		JBrowse link
G Setd2 SET domain containing 2 acts_upstream_of_or_within IMP (MGI:4431136|PMID:20133625) MGI PMID:20133625 MGI:4431136 NCBI chr 9:110,361,368...110,447,703
Ensembl chr 9:110,361,665...110,447,701 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within IGI (MGI:4429763|PMID:19850029) MGI PMID:19850029 MGI:4429763 NCBI chr 8:23,901,401...23,939,648
Ensembl chr 8:23,901,518...23,939,648 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IGI (MGI:4429763|PMID:19850029) MGI PMID:19850029 MGI:4429763 NCBI chr 3:83,673,628...83,681,621
Ensembl chr 3:83,673,628...83,681,623 		JBrowse link
G Shroom3 shroom family member 3 acts_upstream_of_or_within IMP (MGI:3610718|PMID:16249236) MGI PMID:16249236 MGI:3610718 NCBI chr 5:92,831,294...93,113,618
Ensembl chr 5:92,831,294...93,113,177 		JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) acts_upstream_of_or_within IMP (MGI:1095997|PMID:9284043) MGI PMID:9284043 MGI:1095997 NCBI chr 4:155,238,532...155,306,992
Ensembl chr 4:155,238,532...155,307,049 		JBrowse link
G Spint1 serine protease inhibitor, Kunitz type 1 acts_upstream_of_or_within IGI (MGI:4360135|PMID:19592578) MGI PMID:19592578 MGI:4360135 NCBI chr 2:119,067,841...119,079,995
Ensembl chr 2:119,067,843...119,080,008 		JBrowse link
G Spint2 serine protease inhibitor, Kunitz type 2 acts_upstream_of_or_within IMP
IGI		 (MGI:4360135|PMID:19592578) MGI PMID:19592578 MGI:4360135 NCBI chr 7:28,955,755...28,981,484
Ensembl chr 7:28,955,748...28,981,337 		JBrowse link
G St14 suppression of tumorigenicity 14 (colon carcinoma) acts_upstream_of_or_within IGI (MGI:4360135|PMID:19592578) MGI PMID:19592578 MGI:4360135 NCBI chr 9:30,999,886...31,043,138
Ensembl chr 9:31,000,698...31,043,149 		JBrowse link
G Stil Scl/Tal1 interrupting locus acts_upstream_of_or_within IMP (MGI:1339521|PMID:10385121) MGI PMID:10385121 MGI:1339521 NCBI chr 4:114,857,287...114,900,404
Ensembl chr 4:114,857,356...114,900,393 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within IMP (MGI:3604917|PMID:16155214) MGI PMID:16155214 MGI:3604917 NCBI chr19:46,385,335...46,477,243
Ensembl chr19:46,385,335...46,477,243 		JBrowse link
G T brachyury, T-box transcription factor T acts_upstream_of_or_within IMP (MGI:3701028|PMID:16835439) MGI PMID:16835439 MGI:3701028 NCBI chr17:8,653,255...8,661,328
Ensembl chr17:8,653,255...8,661,328 		JBrowse link
G Tead2 TEA domain family member 2 acts_upstream_of_or_within IMP (MGI:3763398|PMID:17868131) MGI PMID:17868131 MGI:3763398 NCBI chr 7:44,865,216...44,882,892
Ensembl chr 7:44,865,177...44,883,068 		JBrowse link
G Tfap2a transcription factor AP-2, alpha acts_upstream_of_or_within IMP (MGI:1313057|PMID:9811866), (MGI:80519|PMID:8622766) MGI PMID:8622766 PMID:9811866 MGI:1313057 MGI:80519 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in IMP (MGI:74339|PMID:7600998) BHF-UCL PMID:7600998 MGI:74339 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in IMP (MGI:894212|PMID:9217007) BHF-UCL PMID:9217007 MGI:894212 NCBI chr 1:186,354,984...186,441,504
Ensembl chr 1:186,354,989...186,438,186 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within IMP (MGI:3697552|PMID:17082251) MGI PMID:17082251 MGI:3697552 NCBI chr17:71,151,200...71,160,527
Ensembl chr17:71,151,200...71,160,541 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within IMP (MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:4453264 NCBI chr 5:124,678,835...124,688,566
Ensembl chr 5:124,678,758...124,688,569 		JBrowse link
G Traf6 TNF receptor-associated factor 6 involved_in IMP (MGI:2181331|PMID:11007897) UniProt PMID:11007897 MGI:2181331 NCBI chr 2:101,508,765...101,532,013
Ensembl chr 2:101,508,774...101,532,014 		JBrowse link
G Trim71 tripartite motif-containing 71 acts_upstream_of_or_within IMP (MGI:4356244|PMID:19098426) MGI PMID:19098426 MGI:4356244 NCBI chr 9:114,340,336...114,393,437
Ensembl chr 9:114,336,201...114,393,437 		JBrowse link
G Tsc1 TSC complex subunit 1 acts_upstream_of_or_within IMP (MGI:2137425|PMID:11438694) MGI PMID:11438694 MGI:2137425 NCBI chr 2:28,531,005...28,581,183
Ensembl chr 2:28,531,240...28,581,179 		JBrowse link
G Tsc2 TSC complex subunit 2 acts_upstream_of_or_within IMP (MGI:1333508|PMID:10096549) MGI PMID:10096549 MGI:1333508 NCBI chr17:24,814,788...24,851,607
Ensembl chr17:24,814,790...24,851,604 		JBrowse link
G Tulp3 tubby-like protein 3 acts_upstream_of_or_within IMP (MGI:3841513|PMID:19223390) MGI PMID:19223390 MGI:3841513 NCBI chr 6:128,298,103...128,332,833
Ensembl chr 6:128,298,124...128,332,814 		JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 acts_upstream_of_or_within IMP (MGI:72096|PMID:7729687) MGI PMID:7729687 MGI:72096 NCBI chr12:34,007,670...34,009,830
Ensembl chr12:34,007,670...34,009,828 		JBrowse link
G Vangl2 VANGL planar cell polarity 2 acts_upstream_of_or_within IGI
IMP		 (MGI:4880797|PMID:21246654)
(MGI:4438817|PMID:19966784)
(MGI:2676511|PMID:14512015)
(MGI:2153976|PMID:11709546), (MGI:2449213|PMID:12499390)
(MGI:5498591|PMID:23760952)
(MGI:3714704|PMID:17433286)
(MGI:3046397|PMID:15229603)
(MGI:3703464|PMID:17229766)		 MGI PMID:11709546 PMID:12499390 PMID:14512015 PMID:15229603 PMID:17229766 More... MGI:2153976 MGI:2449213 MGI:2676511 MGI:3046397 MGI:3703464 MGI:3714704 MGI:4438817 MGI:4880797 MGI:5498591 NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011 		JBrowse link
G Vasp vasodilator-stimulated phosphoprotein acts_upstream_of_or_within
involved_in		 IGI
IBA		 (MGI:3054149|PMID:15371503)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:15371503 PMID:21873635 MGI:3054149 MGI:6201960 NCBI chr 7:18,990,854...19,005,779
Ensembl chr 7:18,990,854...19,005,742 		JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IGI (MGI:3714704|PMID:17433286)
(MGI:4413372|PMID:19795512)		 MGI PMID:17433286 PMID:19795512 MGI:3714704 MGI:4413372 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within IMP (MGI:3624924|PMID:16598713) MGI PMID:16598713 MGI:3624924 NCBI chr 2:44,873,523...45,007,378
Ensembl chr 2:44,873,644...45,007,407 		JBrowse link
G Zic2 zinc finger protein of the cerebellum 2 acts_upstream_of_or_within IMP (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chr14:122,712,796...122,717,740
Ensembl chr14:122,712,847...122,717,264 		JBrowse link
G Zic5 zinc finger protein of the cerebellum 5 acts_upstream_of_or_within IMP (MGI:3051968|PMID:15136147) MGI PMID:15136147 MGI:3051968 NCBI chr14:122,696,572...122,703,127
Ensembl chr14:122,694,207...122,703,089 		JBrowse link
neural tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brpf1 bromodomain and PHD finger containing, 1 acts_upstream_of_or_within IMP (MGI:5806011|PMID:27528195) MGI PMID:27528195 MGI:5806011 NCBI chr 6:113,283,824...113,301,823
Ensembl chr 6:113,284,098...113,301,821 		JBrowse link
G Casp8 caspase 8 acts_upstream_of_or_within IMP (MGI:3609631|PMID:12404118) MGI PMID:12404118 MGI:3609631 NCBI chr 1:58,834,398...58,886,662
Ensembl chr 1:58,834,533...58,886,662 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within IMP (MGI:2179743|PMID:11694877) MGI PMID:11694877 MGI:2179743 NCBI chr10:17,598,452...17,601,422
Ensembl chr10:17,598,966...17,601,422 		JBrowse link
G Coq7 demethyl-Q 7 acts_upstream_of_or_within IMP (MGI:2154585|PMID:11716496) MGI PMID:11716496 MGI:2154585 NCBI chr 7:118,108,881...118,132,529
Ensembl chr 7:118,108,882...118,132,579 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within IMP (MGI:2679893|PMID:14603322) MGI PMID:14603322 MGI:2679893 NCBI chr 5:31,410,623...31,448,458
Ensembl chr 5:31,410,621...31,448,460 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within IMP (MGI:3579954|PMID:15930098) MGI PMID:15930098 MGI:3579954 NCBI chr 2:162,859,200...162,888,075
Ensembl chr 2:162,859,274...162,888,061 		JBrowse link
G Ipmk inositol polyphosphate multikinase acts_upstream_of_or_within IMP (MGI:3583505|PMID:15939867) MGI PMID:15939867 MGI:3583505 NCBI chr10:71,183,574...71,221,715
Ensembl chr10:71,183,593...71,269,157 		JBrowse link
G Map3k7 mitogen-activated protein kinase kinase kinase 7 acts_upstream_of_or_within IMP (MGI:3607973|PMID:16260493) MGI PMID:16260493 MGI:3607973 NCBI chr 4:31,963,659...32,023,470
Ensembl chr 4:31,964,097...32,023,467 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within IMP (MGI:3603078|PMID:16000382) MGI PMID:16000382 MGI:3603078 NCBI chr18:10,725,523...10,822,969
Ensembl chr18:10,725,548...10,818,704 		JBrowse link
G Nup50 nucleoporin 50 acts_upstream_of_or_within IMP (MGI:1860670|PMID:10891500) MGI PMID:10891500 MGI:1860670 NCBI chr15:84,800,100...84,827,164
Ensembl chr15:84,807,612...84,827,164 		JBrowse link
G Ptch1 patched 1 involved_in IDA (MGI:3687672|PMID:10500113) Roslin_Institute PMID:10500113 MGI:3687672 NCBI chr13:63,656,142...63,721,274
Ensembl chr13:63,656,142...63,721,412 		JBrowse link
G Shh sonic hedgehog involved_in ISO RGD
MGI		 PMID:8124714 GO_REF:0000096 MGI:4417868 RGD:69996 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Stk3 serine/threonine kinase 3 acts_upstream_of_or_within IGI (MGI:4412133|PMID:19786569) MGI PMID:19786569 MGI:4412133 NCBI chr15:34,875,645...35,155,990
Ensembl chr15:34,875,642...35,179,067 		JBrowse link
G Stk4 serine/threonine kinase 4 acts_upstream_of_or_within IGI (MGI:4412133|PMID:19786569) MGI PMID:19786569 MGI:4412133 NCBI chr 2:163,916,033...163,997,444
Ensembl chr 2:163,912,242...163,997,444 		JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within IMP (MGI:3610767|PMID:16357211) MGI PMID:16357211 MGI:3610767 NCBI chr 5:122,377,558...122,402,557
Ensembl chr 5:122,375,911...122,402,523 		JBrowse link
G Tulp3 tubby-like protein 3 acts_upstream_of_or_within IMP (MGI:2136130|PMID:11406614) MGI PMID:11406614 MGI:2136130 NCBI chr 6:128,298,103...128,332,833
Ensembl chr 6:128,298,124...128,332,814 		JBrowse link
otic vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 TAS
IGI		 (MGI:5424107|PMID:22235191)
(MGI:2683889|PMID:14623822)		 ParkinsonsUK-UCL
MGI		 PMID:14623822 PMID:22235191 MGI:2683889 MGI:5424107 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Fgf3 fibroblast growth factor 3 involved_in
acts_upstream_of_or_within		 TAS
IGI		 (MGI:5424107|PMID:22235191)
(MGI:3720541|PMID:17601531)		 ParkinsonsUK-UCL
MGI		 PMID:17601531 PMID:22235191 MGI:3720541 MGI:5424107 NCBI chr 7:144,392,349...144,397,085
Ensembl chr 7:144,391,820...144,398,173 		JBrowse link
G Fgf8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 TAS
IGI		 (MGI:5424107|PMID:22235191)
(MGI:3720541|PMID:17601531)		 ParkinsonsUK-UCL
MGI		 PMID:17601531 PMID:22235191 MGI:3720541 MGI:5424107 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within
involved_in		 IMP
TAS		 (MGI:1197797|PMID:9435295)
(MGI:5424107|PMID:22235191)		 MGI
ParkinsonsUK-UCL		 PMID:9435295 PMID:22235191 MGI:1197797 MGI:5424107 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Hesx1 homeobox gene expressed in ES cells acts_upstream_of_or_within IMP (MGI:1206234|PMID:9620767) MGI PMID:9620767 MGI:1206234 NCBI chr14:26,716,375...26,724,286
Ensembl chr14:26,716,373...26,724,286 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 acts_upstream_of_or_within IMP (MGI:3795349|PMID:18377888) MGI PMID:18377888 MGI:3795349 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
G Tcap titin-cap involved_in IEP (MGI:1314551|PMID:9817758) BHF-UCL PMID:9817758 MGI:1314551 NCBI chr11:98,274,637...98,275,779
Ensembl chr11:98,274,637...98,275,779 		JBrowse link
planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within IGI (MGI:4830023|PMID:20704721) MGI PMID:20704721 MGI:4830023 NCBI chr15:85,782,959...85,918,424
Ensembl chr15:85,783,130...85,918,404 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within
involved_in		 IGI
IBA		 (MGI:3624185|PMID:16571627)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:16571627 PMID:21873635 MGI:3624185 MGI:6201960 NCBI chr 4:155,931,829...155,943,760
Ensembl chr 4:155,931,859...155,943,760 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within
involved_in		 IMP
IBA
IGI		 (MGI:3624185|PMID:16571627)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:16571627 PMID:21873635 MGI:3624185 MGI:6201960 NCBI chr11:69,891,418...69,900,935
Ensembl chr11:69,891,421...69,903,127 		JBrowse link
G Dvl3 dishevelled segment polarity protein 3 acts_upstream_of_or_within
involved_in		 IGI
IBA		 (MGI:3821448|PMID:19008950)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:19008950 PMID:21873635 MGI:3821448 MGI:6201960 NCBI chr16:20,335,694...20,352,763
Ensembl chr16:20,335,732...20,352,760 		JBrowse link
G Fzd1 frizzled class receptor 1 acts_upstream_of_or_within IGI (MGI:4837757|PMID:20940229) MGI PMID:20940229 MGI:4837757 NCBI chr 5:4,803,839...4,808,216
Ensembl chr 5:4,803,839...4,808,035 		JBrowse link
G Fzd2 frizzled class receptor 2 acts_upstream_of_or_within IGI (MGI:4837757|PMID:20940229) MGI PMID:20940229 MGI:4837757 NCBI chr11:102,495,257...102,498,884
Ensembl chr11:102,495,222...102,498,884 		JBrowse link
G Grhl3 grainyhead like transcription factor 3 acts_upstream_of_or_within IGI (MGI:4819429|PMID:20643356) MGI PMID:20643356 MGI:4819429 NCBI chr 4:135,269,199...135,300,943
Ensembl chr 4:135,269,199...135,300,941 		JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of IGI (MGI:4830282|PMID:19056682) MGI PMID:19056682 MGI:4830282 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
G Ptk7 PTK7 protein tyrosine kinase 7 acts_upstream_of_or_within IGI (MGI:4830023|PMID:20704721) MGI PMID:20704721 MGI:4830023 NCBI chr17:46,875,377...46,940,975
Ensembl chr17:46,875,397...46,940,430 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within IGI (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr 8:23,901,401...23,939,648
Ensembl chr 8:23,901,518...23,939,648 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IGI (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr 3:83,673,628...83,681,621
Ensembl chr 3:83,673,628...83,681,623 		JBrowse link
G Sfrp5 secreted frizzled-related sequence protein 5 acts_upstream_of_or_within IGI (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr19:42,186,410...42,190,691
Ensembl chr19:42,186,410...42,190,691 		JBrowse link
G Vangl2 VANGL planar cell polarity 2 acts_upstream_of_or_within IGI
IMP		 (MGI:4819429|PMID:20643356)
(MGI:4830023|PMID:20704721)
(MGI:3624185|PMID:16571627)
(MGI:3821448|PMID:19008950)
(MGI:4837757|PMID:20940229)
(MGI:3793375|PMID:18257070)		 MGI PMID:16571627 PMID:18257070 PMID:19008950 PMID:20643356 PMID:20704721 More... MGI:3624185 MGI:3793375 MGI:3821448 MGI:4819429 MGI:4830023 MGI:4837757 NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011 		JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IMP (MGI:4830282|PMID:19056682) MGI PMID:19056682 MGI:4830282 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405 		JBrowse link
positive regulation of epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egf epidermal growth factor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:129,471,223...129,548,971
Ensembl chr 3:129,471,214...129,548,965 		JBrowse link
G Fgf2 fibroblast growth factor 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:37,402,616...37,464,255
Ensembl chr 3:37,402,495...37,464,257 		JBrowse link
G Mmrn2 multimerin 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:34,097,461...34,126,244
Ensembl chr14:34,097,422...34,126,244 		JBrowse link
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:149,733,625...149,787,023
Ensembl chr 4:149,733,625...149,787,028 		JBrowse link
G Vegfa vascular endothelial growth factor A involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295 		JBrowse link
positive regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IMP (MGI:3822373|PMID:19112489) UniProt PMID:19112489 MGI:3822373 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Gdnf glial cell line derived neurotrophic factor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:7,839,529...7,867,061
Ensembl chr15:7,840,327...7,867,056 		JBrowse link
G Six1 sine oculis-related homeobox 1 involved_in IMP (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661 		JBrowse link
G Six4 sine oculis-related homeobox 4 involved_in IMP (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chr12:73,146,383...73,160,201
Ensembl chr12:73,146,383...73,160,230 		JBrowse link
regulation of establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within IMP (MGI:4438817|PMID:19966784) MGI PMID:19966784 MGI:4438817 NCBI chr 3:129,776,408...129,855,248
Ensembl chr 3:129,776,408...129,855,202 		JBrowse link
regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdnf glial cell line derived neurotrophic factor involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr15:7,839,529...7,867,061
Ensembl chr15:7,840,327...7,867,056 		JBrowse link
roof plate formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf7 growth differentiation factor 7 acts_upstream_of_or_within IMP (MGI:1353705|PMID:10693795) MGI PMID:10693795 MGI:1353705 NCBI chr12:8,347,918...8,351,954
Ensembl chr12:8,347,918...8,351,954 		JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IMP (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chr12:9,624,442...9,631,500
Ensembl chr12:9,620,116...9,631,500 		JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 involved_in IEP (MGI:3576186|PMID:15821257) UniProt PMID:15821257 MGI:3576186 NCBI chr 4:155,042,358...155,046,829
Ensembl chr 4:155,045,380...155,046,828 		JBrowse link
G Irx1 Iroquois homeobox 1 involved_in IEP (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chr13:72,106,351...72,111,842
Ensembl chr13:72,106,040...72,111,842 		JBrowse link
G Irx2 Iroquois homeobox 2 involved_in IEP (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chr13:72,771,463...72,782,315
Ensembl chr13:72,776,939...72,782,317 		JBrowse link
G Irx3 Iroquois related homeobox 3 involved_in IEP (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chr 8:92,525,139...92,528,282
Ensembl chr 8:92,525,153...92,528,695 		JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IMP (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chr12:9,624,442...9,631,500
Ensembl chr12:9,620,116...9,631,500 		JBrowse link
ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IMP (MGI:3611949|PMID:16319112) UniProt PMID:16319112 MGI:3611949 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Gdnf glial cell line derived neurotrophic factor involved_in IMP (MGI:81287|PMID:8657307) UniProt PMID:8657307 MGI:81287 NCBI chr15:7,839,529...7,867,061
Ensembl chr15:7,840,327...7,867,056 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in IDA (MGI:3714585|PMID:17522159) UniProt PMID:17522159 MGI:3714585 NCBI chr 2:113,579,020...113,588,993
Ensembl chr 2:113,576,509...113,588,991 		JBrowse link
G Hs2st1 heparan sulfate 2-O-sulfotransferase 1 acts_upstream_of_or_within IMP (MGI:1270048|PMID:9637690) MGI PMID:9637690 MGI:1270048 NCBI chr 3:144,135,462...144,275,977
Ensembl chr 3:144,135,467...144,275,942 		JBrowse link
G Nog noggin involved_in IDA (MGI:3714585|PMID:17522159) UniProt PMID:17522159 MGI:3714585 NCBI chr11:89,191,464...89,193,385
Ensembl chr11:89,191,464...89,193,158 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28664
    developmental process 7327
      anatomical structure formation involved in morphogenesis 1408
        tube formation 184
          epithelial tube formation 169
            Malpighian tubule bud morphogenesis 0
            embryonic epithelial tube formation + 157
            endothelial tube formation 0
            mammary gland cord formation 0
            metanephric tubule formation + 6
            negative regulation of epithelial tube formation 0
            nephric duct formation + 8
            otic vesicle formation + 7
            pancreatic bud formation + 0
            positive regulation of epithelial tube formation + 9
            regulation of epithelial tube formation + 9
Path 2
Term Annotations click to browse term
  biological_process 28664
    developmental process 7327
      anatomical structure development 6804
        anatomical structure morphogenesis 3036
          tissue morphogenesis 728
            morphogenesis of an epithelium 606
              epithelial tube morphogenesis 407
                epithelial tube formation 169
                  Malpighian tubule bud morphogenesis 0
                  embryonic epithelial tube formation + 157
                  endothelial tube formation 0
                  mammary gland cord formation 0
                  metanephric tubule formation + 6
                  negative regulation of epithelial tube formation 0
                  nephric duct formation + 8
                  otic vesicle formation + 7
                  pancreatic bud formation + 0
                  positive regulation of epithelial tube formation + 9
                  regulation of epithelial tube formation + 9
paths to the root