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ONTOLOGY REPORT - ANNOTATIONS

Term:epithelial tube formation
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Accession:GO:0072175 term browser browse the term
Definition:The developmental process pertaining to the initial formation of an epithelial tube.


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epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PODXL podocalyxin like involved_in ISO (PMID:15814834) UniProt PMID:15814834 NCBI chr 7:123,467,140...123,523,503
Ensembl chr 7:135,984,592...135,992,815 		JBrowse link
anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASP3 caspase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5050793|PMID:21515572) Ensembl
MGI		 PMID:21515572 GO_REF:0000107 MGI:5050793 NCBI chr 4:176,793,190...176,815,023
Ensembl chr 4:189,018,422...189,040,185 		JBrowse link
G GRHL2 grainyhead like transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5050793|PMID:21515572) Ensembl
MGI		 PMID:21515572 GO_REF:0000107 MGI:5050793 NCBI chr 8:98,129,147...98,308,120
Ensembl chr 8:100,308,575...100,471,830 		JBrowse link
G LOC100994139 folate receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:67,268,721...67,275,498
Ensembl chr11:70,492,039...70,498,665 		JBrowse link
G SPECC1L sperm antigen with calponin homology and coiled-coil domains 1 like acts_upstream_of_or_within ISO (MGI:6101898|PMID:26787558) MGI PMID:26787558 MGI:6101898 NCBI chr22:5,078,435...5,224,090
Ensembl chr22:21,943,630...22,089,686 		JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATAD2A GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (MGI:3762244|PMID:17565372) MGI PMID:17565372 MGI:3762244 NCBI chr19:18,824,615...18,947,351
Ensembl chr19:19,873,119...19,942,670 		JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:80520|PMID:8622765) MGI PMID:8622765 MGI:80520 NCBI chr 6:10,237,834...10,260,843 JBrowse link
embryonic epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RET ret proto-oncogene acts_upstream_of_or_within ISO (MGI:3513229|PMID:15569713) MGI PMID:15569713 MGI:3513229 NCBI chr10:40,050,396...40,103,629
Ensembl chr10:43,249,468...43,284,331 		JBrowse link
G SHANK3 SH3 and multiple ankyrin repeat domains 3 acts_upstream_of_or_within ISO (MGI:3513229|PMID:15569713) MGI PMID:15569713 MGI:3513229 NCBI chr22:30,951,866...30,973,608 JBrowse link
G WNT4 Wnt family member 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3624584|PMID:16546160) MGI
Ensembl		 PMID:16546160 GO_REF:0000107 MGI:3624584 NCBI chr 1:21,310,228...21,335,985
Ensembl chr 1:22,255,056...22,268,801 		JBrowse link
embryonic heart tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HAND1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1927045|PMID:11076684) MGI
Ensembl		 PMID:11076684 GO_REF:0000107 MGI:1927045 NCBI chr 5:149,876,970...149,880,269
Ensembl chr 5:155,875,935...155,878,166 		JBrowse link
establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTHRC1 collagen triple helix repeat containing 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3814781|PMID:18606138) MGI
Ensembl		 PMID:18606138 GO_REF:0000107 MGI:3814781 NCBI chr 8:100,027,417...100,038,945
Ensembl chr 8:102,182,944...102,194,445 		JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3814781|PMID:18606138) MGI PMID:18606138 MGI:3814781 NCBI chr 1:135,754,897...135,783,031
Ensembl chr 1:139,683,745...139,704,281 		JBrowse link
initiation of neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KDM2B lysine demethylase 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:119,027,633...119,183,779
Ensembl chr12:122,401,296...122,555,246 		JBrowse link
mesonephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNF1B HNF1 homeobox B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4430439|PMID:20040500) MGI
Ensembl		 PMID:20040500 GO_REF:0000107 MGI:4430439 NCBI chr17:19,333,485...19,392,147
Ensembl chr17:19,633,424...19,691,863 		JBrowse link
G WNT9B Wnt family member 9B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3588895|PMID:16054034) MGI
Ensembl		 PMID:16054034 GO_REF:0000107 MGI:3588895 NCBI chr17:10,616,957...10,651,954 JBrowse link
mesonephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX2 paired box 2 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chr10:97,344,978...97,429,086
Ensembl chr10:100,822,676...100,904,028 		JBrowse link
G SIX1 SIX homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:41,250,512...41,256,567
Ensembl chr14:59,515,324...59,527,494 		JBrowse link
metanephric nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX2 paired box 2 involved_in ISO (MGI:3704067|PMID:17314325) UniProt PMID:17314325 MGI:3704067 NCBI chr10:97,344,978...97,429,086
Ensembl chr10:100,822,676...100,904,028 		JBrowse link
G PAX8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:88,845,877...88,905,266
Ensembl chr2A:114,162,110...114,222,865 		JBrowse link
G SOX8 SRY-box transcription factor 8 acts_upstream_of_or_within ISO (MGI:4939090|PMID:21212101) MGI PMID:21212101 MGI:4939090
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (MGI:4939090|PMID:21212101) MGI PMID:21212101 MGI:4939090 NCBI chr17:66,028,737...66,034,122 JBrowse link
metanephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT4 Wnt family member 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4950307|PMID:21350016) MGI
Ensembl		 PMID:21350016 GO_REF:0000107 MGI:4950307 NCBI chr 1:21,310,228...21,335,985
Ensembl chr 1:22,255,056...22,268,801 		JBrowse link
G WNT9B Wnt family member 9B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4950307|PMID:21350016) MGI
Ensembl		 PMID:21350016 GO_REF:0000107 MGI:4950307 NCBI chr17:10,616,957...10,651,954 JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA3 GATA binding protein 3 involved_in ISO (MGI:3822373|PMID:19112489) UniProt PMID:19112489 MGI:3822373 NCBI chr10:8,075,951...8,105,573
Ensembl chr10:8,064,207...8,086,272 		JBrowse link
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA3 GATA binding protein 3 involved_in ISO (MGI:3822373|PMID:19112489) UniProt PMID:19112489 MGI:3822373 NCBI chr10:8,075,951...8,105,573
Ensembl chr10:8,064,207...8,086,272 		JBrowse link
negative regulation of planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4830282|PMID:19056682) MGI PMID:19056682 MGI:4830282 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
nephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G GATA3 GATA binding protein 3 involved_in ISO (MGI:3611949|PMID:16319112) UniProt PMID:16319112 MGI:3611949 NCBI chr10:8,075,951...8,105,573
Ensembl chr10:8,064,207...8,086,272 		JBrowse link
G HNF1B HNF1 homeobox B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4430449|PMID:19913010) MGI
Ensembl		 PMID:19913010 GO_REF:0000107 MGI:4430449 NCBI chr17:19,333,485...19,392,147
Ensembl chr17:19,633,424...19,691,863 		JBrowse link
G PAX2 paired box 2 involved_in ISO (MGI:2445273|PMID:12435636) UniProt PMID:12435636 MGI:2445273 NCBI chr10:97,344,978...97,429,086
Ensembl chr10:100,822,676...100,904,028 		JBrowse link
nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3714576|PMID:17537789) MGI
Ensembl		 PMID:17537789 GO_REF:0000107 MGI:3714576 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030 		JBrowse link
G WNT6 Wnt family member 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2178881|PMID:11948913) MGI
Ensembl		 PMID:11948913 GO_REF:0000107 MGI:2178881 NCBI chr2B:106,119,740...106,134,317
Ensembl chr2B:224,714,229...224,728,171 		JBrowse link
neural fold bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LUZP1 leucine zipper protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3818102|PMID:18801334) MGI
Ensembl		 PMID:18801334 GO_REF:0000107 MGI:3818102 NCBI chr 1:22,269,918...22,364,564
Ensembl chr 1:23,219,063...23,243,277 		JBrowse link
neural fold elevation formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP5 bone morphogenetic protein 5 involved_in ISO (MGI:1332253|PMID:10079236) BHF-UCL PMID:10079236 MGI:1332253 NCBI chr 6:55,302,721...55,425,248
Ensembl chr 6:56,936,850...57,059,519 		JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:53,509,484...53,606,889
Ensembl chr20:54,788,974...54,885,021 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1337194|PMID:10328919) MGI
Ensembl		 PMID:10328919 GO_REF:0000107 MGI:1337194 NCBI chr14:42,295,691...42,348,478
Ensembl chr14:60,552,374...60,604,885 		JBrowse link
neural fold formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CFL1 cofilin 1 acts_upstream_of_or_within ISO (MGI:3530675|PMID:15649475) MGI PMID:15649475 MGI:3530675 NCBI chr11:61,215,092...61,218,628
Ensembl chr11:64,544,275...64,550,806 		JBrowse link
G GATAD2A GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (MGI:3762244|PMID:17565372) MGI PMID:17565372 MGI:3762244 NCBI chr19:18,824,615...18,947,351
Ensembl chr19:19,873,119...19,942,670 		JBrowse link
G LOC100991444 chromatin remodeling regulator CECR2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4880797|PMID:21246654) MGI
Ensembl		 PMID:21246654 GO_REF:0000107 MGI:4880797 NCBI chr22:795,525...987,645
Ensembl chr22:16,335,754...16,412,640 		JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2155575|PMID:11311163) MGI
Ensembl		 PMID:11311163 GO_REF:0000107 MGI:2155575 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972 		JBrowse link
G OVOL2 ovo like zinc finger 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3618450|PMID:16423343) MGI
Ensembl		 PMID:16423343 GO_REF:0000107 MGI:3618450 NCBI chr20:17,983,277...18,019,441
Ensembl chr20:17,962,123...17,994,486 		JBrowse link
neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1327082|PMID:9883720) MGI
Ensembl		 PMID:9883720 GO_REF:0000107 MGI:1327082 NCBI chr 9:101,834,189...102,005,811
Ensembl chr 9:130,484,333...130,652,941 		JBrowse link
G ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (MGI:1327082|PMID:9883720) MGI PMID:9883720 MGI:1327082 NCBI chr 1:154,586,423...154,711,621
Ensembl chr 1:158,280,994...158,313,915 		JBrowse link
G ADM adrenomedullin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3689296|PMID:16981008) MGI
Ensembl		 PMID:16981008 GO_REF:0000107 MGI:3689296 NCBI chr11:10,437,712...10,440,053
Ensembl chr11:10,165,418...10,167,842 		JBrowse link
G ALX1 ALX homeobox 1 acts_upstream_of_or_within ISO (MGI:81193|PMID:8673125) MGI PMID:8673125 MGI:81193 NCBI chr12:82,800,273...82,822,031
Ensembl chr12:85,902,113...85,923,774 		JBrowse link
G APAF1 apoptotic peptidase activating factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2149166|PMID:11504943), (MGI:893797|PMID:9216040) MGI
Ensembl		 PMID:9216040 PMID:11504943 GO_REF:0000107 MGI:2149166 MGI:893797 NCBI chr12:96,224,515...96,311,246
Ensembl chr12:99,637,622...99,726,939 		JBrowse link
G ARHGAP35 Rho GTPase activating protein 35 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1926242|PMID:11044403) MGI
Ensembl		 PMID:11044403 GO_REF:0000107 MGI:1926242 NCBI chr19:43,850,692...43,994,487
Ensembl chr19:52,435,379...52,521,104 		JBrowse link
G ARID1A AT-rich interaction domain 1A acts_upstream_of_or_within ISO (MGI:5466629|PMID:23129809) MGI PMID:23129809 MGI:5466629 NCBI chr 1:25,960,868...26,047,057
Ensembl chr 1:27,018,616...27,103,239 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3607949|PMID:16170314) MGI
Ensembl		 PMID:16170314 GO_REF:0000107 MGI:3607949 NCBI chr15:51,601,526...51,656,460
Ensembl chr15:70,362,261...70,416,964 		JBrowse link
G BCL10 BCL10 immune signaling adaptor involved_in ISO (MGI:1930354|PMID:11163238) UniProt PMID:11163238 MGI:1930354 NCBI chr 1:117,823,388...117,834,314 JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4429763|PMID:19850029) MGI
Ensembl		 PMID:19850029 GO_REF:0000107 MGI:4429763 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G BRD2 bromodomain containing 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6120662|PMID:19362612) MGI
Ensembl		 PMID:19362612 GO_REF:0000107 MGI:6120662 NCBI chr 6:32,538,130...32,550,823
Ensembl chr 6:33,657,648...33,666,031 		JBrowse link
G CC2D2A coiled-coil and C2 domain containing 2A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5696765|PMID:24947469) MGI
Ensembl		 PMID:24947469 GO_REF:0000107 MGI:5696765 NCBI chr 4:9,904,237...10,047,440
Ensembl chr 4:15,204,326...15,349,281 		JBrowse link
G CDK20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr 9:59,114,640...59,146,438
Ensembl chr 9:87,186,151...87,216,537 		JBrowse link
G CELSR1 cadherin EGF LAG seven-pass G-type receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3703464|PMID:17229766) Ensembl
MGI		 PMID:17229766 GO_REF:0000107 MGI:3703464 Ensembl chr22:45,428,159...45,604,453 JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (MGI:2384266|PMID:12149478) MGI PMID:12149478 MGI:2384266 NCBI chr 6:137,134,142...137,136,550 JBrowse link
G CLUAP1 clusterin associated protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5509110|PMID:23742838) MGI
Ensembl		 PMID:23742838 GO_REF:0000107 MGI:5509110 NCBI chr16:2,423,563...2,461,486
Ensembl chr16:3,600,370...3,637,622 		JBrowse link
G COBL cordon-bleu WH2 repeat protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2676511|PMID:14512015) MGI
Ensembl		 PMID:14512015 GO_REF:0000107 MGI:2676511 NCBI chr 7:51,652,318...51,952,256
Ensembl chr 7:51,895,807...52,097,841 		JBrowse link
G DEAF1 DEAF1 transcription factor involved_in ISO (MGI:3029622|PMID:14966286) UniProt PMID:14966286 MGI:3029622 NCBI chr11:652,337...709,854 JBrowse link
G DLC1 DLC1 Rho GTPase activating protein acts_upstream_of_or_within ISO (MGI:3529660|PMID:15710412) MGI PMID:15710412 MGI:3529660 NCBI chr 8:12,282,190...12,809,770
Ensembl chr 8:9,037,742...9,460,233 		JBrowse link
G DVL2 dishevelled segment polarity protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2389015|PMID:12421720) MGI
Ensembl		 PMID:12421720 GO_REF:0000107 MGI:2389015 NCBI chr17:7,255,241...7,264,452
Ensembl chr17:7,242,493...7,251,571 		JBrowse link
G ENAH ENAH actin regulator acts_upstream_of_or_within ISO (MGI:3054149|PMID:15371503)
(MGI:1331576|PMID:10069337)		 MGI PMID:10069337 PMID:15371503 MGI:1331576 MGI:3054149 NCBI chr 1:200,956,988...201,113,242
Ensembl chr 1:205,963,247...206,115,672 		JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4367921|PMID:19877275) MGI
Ensembl		 PMID:19877275 GO_REF:0000107 MGI:4367921 NCBI chr19:46,819,833...46,826,235
Ensembl chr19:55,736,325...55,742,589 		JBrowse link
G FZD3 frizzled class receptor 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3616416|PMID:16495441) MGI
Ensembl		 PMID:16495441 GO_REF:0000107 MGI:3616416 NCBI chr 8:27,773,699...27,853,980
Ensembl chr 8:24,973,644...25,042,115 		JBrowse link
G FZD6 frizzled class receptor 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3616416|PMID:16495441) MGI
Ensembl		 PMID:16495441 GO_REF:0000107 MGI:3616416 NCBI chr 8:99,954,523...99,989,153
Ensembl chr 8:102,110,317...102,144,363 		JBrowse link
G GLMN glomulin, FKBP associated protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5320488|PMID:22405651) MGI
Ensembl		 PMID:22405651 GO_REF:0000107 MGI:5320488 NCBI chr 1:94,907,342...94,963,052
Ensembl chr 1:93,646,499...93,701,430 		JBrowse link
G GRHL2 grainyhead like transcription factor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4947318|PMID:21262862) MGI
Ensembl		 PMID:21262862 GO_REF:0000107 MGI:4947318 NCBI chr 8:98,129,147...98,308,120
Ensembl chr 8:100,308,575...100,471,830 		JBrowse link
G GRHL3 grainyhead like transcription factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:23,519,911...23,558,105
Ensembl chr 1:24,502,294...24,547,152 		JBrowse link
G HECTD1 HECT domain E3 ubiquitin protein ligase 1 acts_upstream_of_or_within
involved_in		 ISO (MGI:1267118|PMID:9636176), (MGI:3577662|PMID:15755804)
(MGI:3714713|PMID:17442300)		 MGI
UniProt		 PMID:9636176 PMID:15755804 PMID:17442300 MGI:1267118 MGI:3577662 MGI:3714713 NCBI chr14:11,871,973...11,979,548
Ensembl chr14:30,070,567...30,176,915 		JBrowse link
G IFT122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chr 3:126,498,018...126,578,211
Ensembl chr 3:133,851,433...133,930,117 		JBrowse link
G IFT172 intraflagellar transport 172 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3828200|PMID:18930042) MGI
Ensembl		 PMID:18930042 GO_REF:0000107 MGI:3828200 NCBI chr2A:27,448,139...27,492,302
Ensembl chr2A:27,536,534...27,580,406 		JBrowse link
G IFT57 intraflagellar transport 57 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3703110|PMID:17027958) MGI
Ensembl		 PMID:17027958 GO_REF:0000107 MGI:3703110 NCBI chr 3:105,287,086...105,348,872
Ensembl chr 3:112,222,128...112,282,069 		JBrowse link
G KAT2A lysine acetyltransferase 2A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3709911|PMID:17325035) MGI
Ensembl		 PMID:17325035 GO_REF:0000107 MGI:3709911 NCBI chr17:15,194,414...15,202,818
Ensembl chr17:15,416,075...15,424,197 		JBrowse link
G KDM2A lysine demethylase 2A acts_upstream_of_or_within ISO (MGI:5615026|PMID:25463925) MGI PMID:25463925 MGI:5615026 NCBI chr11:62,470,549...62,616,135
Ensembl chr11:65,793,464...65,930,498 		JBrowse link
G KDM6A lysine demethylase 6A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5448135|PMID:22949634) MGI
Ensembl		 PMID:22949634 GO_REF:0000107 MGI:5448135 NCBI chr  X:37,313,000...37,548,630
Ensembl chr  X:45,127,382...45,362,029 		JBrowse link
G KIF20B kinesin family member 20B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3577662|PMID:15755804) MGI
Ensembl		 PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chr10:86,428,814...86,501,384
Ensembl chr10:89,968,651...90,041,998 		JBrowse link
G LHX2 LIM homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2154554|PMID:11719201) MGI
Ensembl		 PMID:11719201 GO_REF:0000107 MGI:2154554 NCBI chr 9:95,132,445...95,154,130
Ensembl chr 9:123,655,845...123,676,796 		JBrowse link
G LIAS lipoic acid synthetase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3577662|PMID:15755804) MGI
Ensembl		 PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chr 4:33,787,804...33,806,289
Ensembl chr 4:39,639,960...39,657,805 		JBrowse link
G LMO4 LIM domain only 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3029621|PMID:14966285)
(MGI:3573996|PMID:15691703)		 MGI
Ensembl		 PMID:14966285 PMID:15691703 GO_REF:0000107 MGI:3029621 MGI:3573996 NCBI chr 1:119,848,323...119,867,007
Ensembl chr 1:88,698,962...88,718,760 		JBrowse link
G LOC100991444 chromatin remodeling regulator CECR2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4880797|PMID:21246654)
(MGI:3530173|PMID:15640247)
(MGI:4822542|PMID:20589882)		 MGI
Ensembl		 PMID:15640247 PMID:20589882 PMID:21246654 GO_REF:0000107 MGI:3530173 MGI:4822542 MGI:4880797 NCBI chr22:795,525...987,645
Ensembl chr22:16,335,754...16,412,640 		JBrowse link
G LRP2 LDL receptor related protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:56,407,871...56,640,471
Ensembl chr2B:173,873,767...174,103,697 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4413372|PMID:19795512)
(MGI:3055483|PMID:15469977)
(MGI:4413396|PMID:19653321)
(MGI:1347661|PMID:10545599)		 MGI PMID:10545599 PMID:15469977 PMID:19653321 PMID:19795512 MGI:1347661 MGI:3055483 MGI:4413372 MGI:4413396 MGI:61254 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G MED12 mediator complex subunit 12 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4839483|PMID:20630950) MGI
Ensembl		 PMID:20630950 GO_REF:0000107 MGI:4839483 NCBI chr  X:60,386,820...60,410,730
Ensembl chr  X:70,443,667...70,466,942 		JBrowse link
G MKS1 MKS transition zone complex subunit 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4367169|PMID:19776033)
(MGI:5487695|PMID:23454480)		 MGI
Ensembl		 PMID:19776033 PMID:23454480 GO_REF:0000107 MGI:4367169 MGI:5487695 NCBI chr17:52,281,443...52,295,919
Ensembl chr17:57,137,254...57,151,328 		JBrowse link
G MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (MGI:5503248|PMID:23704330) BHF-UCL PMID:23704330 MGI:5503248 NCBI chr14:44,969,573...45,041,296
Ensembl chr14:63,223,484...63,293,881 		JBrowse link
G MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:148,679,587...148,919,002
Ensembl chr 6:153,390,498...153,619,884 		JBrowse link
G MTHFR methylenetetrahydrofolate reductase acts_upstream_of
involved_in		 ISO
IEA		 (PMID:25855017), (PMID:29222906) BHF-UCL
Ensembl		 PMID:25855017 PMID:29222906 GO_REF:0000107 NCBI chr 1:10,548,196...10,568,174
Ensembl chr 1:11,766,334...11,785,419 		JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr2B:70,193,950...70,308,442
Ensembl chr2B:188,003,235...188,116,710 		JBrowse link
G NOG noggin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3640733|PMID:16712836) Ensembl
MGI		 PMID:16712836 GO_REF:0000107 MGI:3640733 NCBI chr17:50,669,186...50,671,081
Ensembl chr17:55,532,394...55,533,092 		JBrowse link
G OPA1 OPA1 mitochondrial dynamin like GTPase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3577662|PMID:15755804) MGI
Ensembl		 PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chr 3:190,890,242...190,995,133
Ensembl chr 3:201,207,607...201,312,358 		JBrowse link
G PAX2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chr10:97,344,978...97,429,086
Ensembl chr10:100,822,676...100,904,028 		JBrowse link
G PAX3 paired box 3 acts_upstream_of_or_within ISO (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chr2B:109,441,938...109,541,449
Ensembl chr2B:228,022,453...228,121,874 		JBrowse link
G PFN1 profilin 1 acts_upstream_of_or_within ISO (MGI:1331576|PMID:10069337) MGI PMID:10069337 MGI:1331576 NCBI chr17:4,993,853...4,996,811
Ensembl chr17:4,981,765...4,985,022 		JBrowse link
G PHACTR4 phosphatase and actin regulator 4 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr 1:27,634,440...27,768,139
Ensembl chr 1:28,741,081...28,794,870 		JBrowse link
G PLXNB2 plexin B2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:30,503,884...30,537,082
Ensembl chr22:49,502,489...49,517,613 		JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:46,127,673...46,262,333
Ensembl chr12:47,100,393...47,126,102 		JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5308523|PMID:22007132) MGI
Ensembl		 PMID:22007132 GO_REF:0000107 MGI:5308523 NCBI chr19:13,657,344...13,683,864
Ensembl chr19:14,385,191...14,406,205 		JBrowse link
G PRKACB protein kinase cAMP-activated catalytic subunit beta acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5308523|PMID:22007132) MGI
Ensembl		 PMID:22007132 GO_REF:0000107 MGI:5308523 NCBI chr 1:116,625,640...116,786,396
Ensembl chr 1:85,487,681...85,644,253 		JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1095757|PMID:9262482) MGI
Ensembl		 PMID:9262482 GO_REF:0000107 MGI:1095757 NCBI chr 9:66,542,675...66,616,820
Ensembl chr 9:94,668,365...94,741,453 		JBrowse link
G PTK7 protein tyrosine kinase 7 (inactive) acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4830023|PMID:20704721)
(MGI:3046397|PMID:15229603)		 MGI
Ensembl		 PMID:15229603 PMID:20704721 GO_REF:0000107 MGI:3046397 MGI:4830023 NCBI chr 6:42,668,077...42,753,547
Ensembl chr 6:43,962,560...44,051,146 		JBrowse link
G RAB23 RAB23, member RAS oncogene family acts_upstream_of_or_within
involved_in		 ISO (MGI:1267118|PMID:9636176)
(MGI:69552|PMID:7720556)		 MGI
UniProt		 PMID:7720556 PMID:9636176 MGI:1267118 MGI:69552 NCBI chr 6:56,744,948...56,780,187
Ensembl chr 6:58,375,559...58,411,107 		JBrowse link
G RALA RAS like proto-oncogene A involved_in ISO (MGI:5504565|PMID:23063435) CACAO PMID:23063435 MGI:5504565 NCBI chr 7:44,528,146...44,611,431
Ensembl chr 7:44,559,380...44,580,495 		JBrowse link
G RARA retinoic acid receptor alpha acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:69060|PMID:7607067) MGI
Ensembl		 PMID:7607067 GO_REF:0000107 MGI:69060 NCBI chr17:16,932,485...16,980,958 JBrowse link
G RARG retinoic acid receptor gamma acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:69060|PMID:7607067) MGI
Ensembl		 PMID:7607067 GO_REF:0000107 MGI:69060 NCBI chr12:35,521,276...35,542,814
Ensembl chr12:36,303,359...36,325,111 		JBrowse link
G RGMA repulsive guidance molecule BMP co-receptor a acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3027667|PMID:14749425) MGI
Ensembl		 PMID:14749425 GO_REF:0000107 MGI:3027667 NCBI chr15:71,728,669...71,774,447
Ensembl chr15:90,922,199...90,956,179 		JBrowse link
G ROCK2 Rho associated coiled-coil containing protein kinase 2 acts_upstream_of_or_within ISO (MGI:3703464|PMID:17229766) MGI PMID:17229766 MGI:3703464 NCBI chr2A:11,167,353...11,331,339
Ensembl chr2A:11,318,370...11,478,986 		JBrowse link
G RPS7 ribosomal protein S7 acts_upstream_of_or_within ISO (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chr2A:3,593,350...3,599,106
Ensembl chr2A:3,512,079...3,517,785 		JBrowse link
G SALL1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (MGI:3698636|PMID:16790473) MGI PMID:16790473 MGI:3698636 NCBI chr16:31,396,399...31,412,753
Ensembl chr16:50,274,090...50,284,819 		JBrowse link
G SALL4 spalt like transcription factor 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3698636|PMID:16790473) MGI
Ensembl		 PMID:16790473 GO_REF:0000107 MGI:3698636 NCBI chr20:48,130,387...48,150,569
Ensembl chr20:49,254,039...49,273,589 		JBrowse link
G SCRIB scribble planar cell polarity protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5050793|PMID:21515572)
(MGI:4819429|PMID:20643356)		 MGI
Ensembl		 PMID:20643356 PMID:21515572 GO_REF:0000107 MGI:4819429 MGI:5050793 NCBI chr 8:140,544,797...140,571,078
Ensembl chr 8:143,557,722...143,582,353 		JBrowse link
G SDC4 syndecan 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5498591|PMID:23760952) MGI
Ensembl		 PMID:23760952 GO_REF:0000107 MGI:5498591 NCBI chr20:41,656,406...41,679,549
Ensembl chr20:42,746,281...42,769,737 		JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4439427|PMID:20215345)
(MGI:4438817|PMID:19966784)		 MGI
Ensembl		 PMID:19966784 PMID:20215345 GO_REF:0000107 MGI:4438817 MGI:4439427 NCBI chr 4:101,937,119...102,043,038
Ensembl chr 4:112,534,779...112,628,065 		JBrowse link
G SEMA4C semaphorin 4C involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:102,443,333...102,455,176
Ensembl chr2A:97,780,242...97,787,341 		JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4431136|PMID:20133625) MGI
Ensembl		 PMID:20133625 GO_REF:0000107 MGI:4431136 NCBI chr 3:46,916,615...47,064,046
Ensembl chr 3:48,018,517...48,163,999 		JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:4429763|PMID:19850029) MGI PMID:19850029 MGI:4429763 NCBI chr 8:40,507,027...40,555,053 JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4429763|PMID:19850029) MGI
Ensembl		 PMID:19850029 GO_REF:0000107 MGI:4429763 NCBI chr 4:146,123,075...146,131,543
Ensembl chr 4:157,944,733...157,953,258 		JBrowse link
G SHROOM3 shroom family member 3 acts_upstream_of_or_within ISO (MGI:3610718|PMID:16249236) MGI PMID:16249236 MGI:3610718 NCBI chr 4:47,420,351...47,767,325
Ensembl chr 4:53,260,739...53,606,976 		JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (MGI:1095997|PMID:9284043) MGI PMID:9284043 MGI:1095997 NCBI chr 1:944,428...1,029,695
Ensembl chr 1:2,091,620...2,174,080 		JBrowse link
G SPINT1 serine peptidase inhibitor, Kunitz type 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4360135|PMID:19592578) MGI
Ensembl		 PMID:19592578 GO_REF:0000107 MGI:4360135 NCBI chr15:19,786,621...19,800,297
Ensembl chr15:38,036,638...38,050,303 		JBrowse link
G SPINT2 serine peptidase inhibitor, Kunitz type 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4360135|PMID:19592578) MGI
Ensembl		 PMID:19592578 GO_REF:0000107 MGI:4360135 NCBI chr19:35,354,043...35,384,063
Ensembl chr19:43,928,847...43,958,886 		JBrowse link
G ST14 ST14 transmembrane serine protease matriptase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4360135|PMID:19592578) MGI
Ensembl		 PMID:19592578 GO_REF:0000107 MGI:4360135 NCBI chr11:125,001,771...125,021,371
Ensembl chr11:128,888,124...128,913,559 		JBrowse link
G STIL STIL centriolar assembly protein acts_upstream_of_or_within ISO (MGI:1339521|PMID:10385121) MGI PMID:10385121 MGI:1339521 NCBI chr 1:46,551,592...46,639,668
Ensembl chr 1:48,072,728...48,137,071 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3604917|PMID:16155214) MGI
Ensembl		 PMID:16155214 GO_REF:0000107 MGI:3604917 NCBI chr10:99,107,516...99,231,761
Ensembl chr10:102,571,886...102,696,472 		JBrowse link
G TBXT T-box transcription factor T acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3701028|PMID:16835439) MGI
Ensembl		 PMID:16835439 GO_REF:0000107 MGI:3701028 NCBI chr 6:164,112,117...164,122,253
Ensembl chr 6:169,095,723...169,106,595 		JBrowse link
G TEAD2 TEA domain transcription factor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3763398|PMID:17868131) MGI
Ensembl		 PMID:17868131 GO_REF:0000107 MGI:3763398 NCBI chr19:46,355,283...46,377,224
Ensembl chr19:55,280,287...55,299,341 		JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:1313057|PMID:9811866), (MGI:80519|PMID:8622766) MGI PMID:8622766 PMID:9811866 MGI:1313057 MGI:80519 NCBI chr 6:10,237,834...10,260,843 JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:38,324,009...38,347,003
Ensembl chr19:46,831,659...46,852,973 		JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in ISO (MGI:894212|PMID:9217007) BHF-UCL PMID:9217007 MGI:894212 NCBI chr 1:193,907,398...194,005,800
Ensembl chr 1:198,758,751...198,859,041 		JBrowse link
G TGIF1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (MGI:3697552|PMID:17082251) MGI PMID:17082251 MGI:3697552 NCBI chr18:10,819,015...10,830,282
Ensembl chr18:13,128,359...13,139,145 		JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4453264|PMID:20178780) MGI
Ensembl		 PMID:20178780 GO_REF:0000107 MGI:4453264 NCBI chr12:121,169,915...121,183,524
Ensembl chr12:125,397,391...125,410,794 		JBrowse link
G TRAF6 TNF receptor associated factor 6 involved_in ISO (MGI:2181331|PMID:11007897) UniProt PMID:11007897 MGI:2181331 NCBI chr11:36,457,633...36,483,616
Ensembl chr11:36,335,609...36,356,334 		JBrowse link
G TRIM71 tripartite motif containing 71 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4356244|PMID:19098426) MGI
Ensembl		 PMID:19098426 GO_REF:0000107 MGI:4356244 NCBI chr 3:32,745,217...32,824,985
Ensembl chr 3:33,050,997...33,123,910 		JBrowse link
G TSC1 TSC complex subunit 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2137425|PMID:11438694) MGI
Ensembl		 PMID:11438694 GO_REF:0000107 MGI:2137425 NCBI chr 9:104,007,708...104,060,938
Ensembl chr 9:132,638,003...132,675,759 		JBrowse link
G TSC2 TSC complex subunit 2 acts_upstream_of_or_within ISO (MGI:1333508|PMID:10096549) MGI PMID:10096549 MGI:1333508 NCBI chr16:615,776...655,411
Ensembl chr16:2,135,696...2,175,569 		JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3841513|PMID:19223390) MGI
Ensembl		 PMID:19223390 GO_REF:0000107 MGI:3841513 NCBI chr12:3,012,890...3,061,831
Ensembl chr12:2,944,769...2,993,278 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (MGI:72096|PMID:7729687) MGI PMID:7729687 MGI:72096 NCBI chr 7:19,761,041...19,765,665 JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:4880797|PMID:21246654)
(MGI:5498591|PMID:23760952)
(MGI:3703464|PMID:17229766)
(MGI:2676511|PMID:14512015)
(MGI:3714704|PMID:17433286)
(MGI:4438817|PMID:19966784)
(MGI:3046397|PMID:15229603)
(MGI:2153976|PMID:11709546), (MGI:2449213|PMID:12499390)		 MGI PMID:11709546 PMID:12499390 PMID:14512015 PMID:15229603 PMID:17229766 More... MGI:2153976 MGI:2449213 MGI:2676511 MGI:3046397 MGI:3703464 MGI:3714704 MGI:4438817 MGI:4880797 MGI:5498591 NCBI chr 1:135,754,897...135,783,031
Ensembl chr 1:139,683,745...139,704,281 		JBrowse link
G VASP vasodilator stimulated phosphoprotein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3054149|PMID:15371503) MGI
Ensembl		 PMID:15371503 GO_REF:0000107 MGI:3054149 NCBI chr19:42,457,222...42,476,688
Ensembl chr19:51,053,567...51,072,553 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4413372|PMID:19795512)
(MGI:3714704|PMID:17433286)		 MGI
Ensembl		 PMID:17433286 PMID:19795512 GO_REF:0000107 MGI:3714704 MGI:4413372 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051 		JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (MGI:3624924|PMID:16598713) MGI PMID:16598713 MGI:3624924 NCBI chr2B:15,325,094...15,460,908
Ensembl chr2B:148,460,904...148,596,500 		JBrowse link
G ZIC2 Zic family member 2 acts_upstream_of_or_within ISO (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chr13:81,151,669...81,156,648 JBrowse link
G ZIC5 Zic family member 5 acts_upstream_of_or_within ISO (MGI:3051968|PMID:15136147) MGI PMID:15136147 MGI:3051968 NCBI chr13:81,132,841...81,149,539 JBrowse link
neural tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRPF1 bromodomain and PHD finger containing 1 acts_upstream_of_or_within ISO (MGI:5806011|PMID:27528195) MGI PMID:27528195 MGI:5806011 NCBI chr 3:9,684,091...9,700,376
Ensembl chr 3:9,922,769...9,939,016 		JBrowse link
G CASP8 caspase 8 acts_upstream_of_or_within ISO (MGI:3609631|PMID:12404118) MGI PMID:12404118 MGI:3609631 NCBI chr2B:88,490,611...88,542,132
Ensembl chr2B:206,669,544...206,696,468 		JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (MGI:2179743|PMID:11694877) MGI PMID:11694877 MGI:2179743 NCBI chr 6:137,134,142...137,136,550 JBrowse link
G COQ7 coenzyme Q7, hydroxylase acts_upstream_of_or_within ISO (MGI:2154585|PMID:11716496) MGI PMID:11716496 MGI:2154585 NCBI chr16:19,229,649...19,242,131
Ensembl chr16:19,172,135...19,184,158 		JBrowse link
G IFT172 intraflagellar transport 172 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2679893|PMID:14603322) MGI
Ensembl		 PMID:14603322 GO_REF:0000107 MGI:2679893 NCBI chr2A:27,448,139...27,492,302
Ensembl chr2A:27,536,534...27,580,406 		JBrowse link
G IFT52 intraflagellar transport 52 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3579954|PMID:15930098) MGI
Ensembl		 PMID:15930098 GO_REF:0000107 MGI:3579954 NCBI chr20:39,929,523...39,986,072
Ensembl chr20:41,023,517...41,080,500 		JBrowse link
G IPMK inositol polyphosphate multikinase acts_upstream_of_or_within ISO (MGI:3583505|PMID:15939867) MGI PMID:15939867 MGI:3583505 NCBI chr10:54,718,987...54,799,264
Ensembl chr10:56,939,012...57,019,101 		JBrowse link
G MAP3K7 mitogen-activated protein kinase kinase kinase 7 acts_upstream_of_or_within ISO (MGI:3607973|PMID:16260493) MGI PMID:16260493 MGI:3607973 NCBI chr 6:88,398,329...88,470,926
Ensembl chr 6:91,664,263...91,737,468 		JBrowse link
G MIB1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3603078|PMID:16000382) MGI
Ensembl		 PMID:16000382 GO_REF:0000107 MGI:3603078 NCBI chr18:14,944,432...15,113,313
Ensembl chr18:18,641,135...18,740,813 		JBrowse link
G NUP50 nucleoporin 50 acts_upstream_of_or_within ISO (MGI:1860670|PMID:10891500) MGI PMID:10891500 MGI:1860670 NCBI chr22:26,049,671...26,073,847
Ensembl chr22:44,232,743...44,254,913 		JBrowse link
G PTCH1 patched 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:66,542,675...66,616,820
Ensembl chr 9:94,668,365...94,741,453 		JBrowse link
G SHH sonic hedgehog signaling molecule ISO RGD PMID:8124714 RGD:69996 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G STK3 serine/threonine kinase 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4412133|PMID:19786569) MGI
Ensembl		 PMID:19786569 GO_REF:0000107 MGI:4412133 NCBI chr 8:95,098,185...95,465,324
Ensembl chr 8:97,355,173...97,708,437 		JBrowse link
G STK4 serine/threonine kinase 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4412133|PMID:19786569) MGI
Ensembl		 PMID:19786569 GO_REF:0000107 MGI:4412133 NCBI chr20:41,297,157...41,410,487
Ensembl chr20:42,389,615...42,503,014 		JBrowse link
G TCTN1 tectonic family member 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3610767|PMID:16357211) MGI
Ensembl		 PMID:16357211 GO_REF:0000107 MGI:3610767 NCBI chr12:108,182,496...108,232,202
Ensembl chr12:111,577,755...111,610,754 		JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2136130|PMID:11406614) MGI
Ensembl		 PMID:11406614 GO_REF:0000107 MGI:2136130 NCBI chr12:3,012,890...3,061,831
Ensembl chr12:2,944,769...2,993,278 		JBrowse link
otic vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2683889|PMID:14623822) MGI
Ensembl		 PMID:14623822 GO_REF:0000107 MGI:2683889 NCBI chr 5:65,979,443...66,069,314
Ensembl chr 5:71,028,187...71,111,706 		JBrowse link
G FGF3 fibroblast growth factor 3 acts_upstream_of_or_within ISO (MGI:3720541|PMID:17601531) MGI PMID:17601531 MGI:3720541 NCBI chr11:64,905,658...64,915,175
Ensembl chr11:68,197,962...68,207,042 		JBrowse link
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3720541|PMID:17601531) MGI
Ensembl		 PMID:17601531 GO_REF:0000107 MGI:3720541 NCBI chr10:98,372,251...98,378,811
Ensembl chr10:101,844,792...101,853,916 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (MGI:1197797|PMID:9435295) MGI PMID:9435295 MGI:1197797 NCBI chr10:118,055,854...118,175,440
Ensembl chr10:121,469,735...121,588,815 		JBrowse link
G HESX1 HESX homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1206234|PMID:9620767) MGI
Ensembl		 PMID:9620767 GO_REF:0000107 MGI:1206234 NCBI chr 3:57,131,419...57,161,205
Ensembl chr 3:58,341,965...58,370,347 		JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (MGI:3795349|PMID:18377888) MGI PMID:18377888 MGI:3795349 NCBI chr17:66,028,737...66,034,122 JBrowse link
G TCAP titin-cap involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:17,622,318...17,625,252
Ensembl chr17:17,839,139...17,842,727 		JBrowse link
planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELSR1 cadherin EGF LAG seven-pass G-type receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4830023|PMID:20704721) Ensembl
MGI		 PMID:20704721 GO_REF:0000107 MGI:4830023 Ensembl chr22:45,428,159...45,604,453 JBrowse link
G DVL1 dishevelled segment polarity protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3624185|PMID:16571627) MGI
Ensembl		 PMID:16571627 GO_REF:0000107 MGI:3624185 NCBI chr 1:92,469...106,748
Ensembl chr 1:1,292,052...1,301,008 		JBrowse link
G DVL2 dishevelled segment polarity protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3624185|PMID:16571627) MGI
Ensembl		 PMID:16571627 GO_REF:0000107 MGI:3624185 NCBI chr17:7,255,241...7,264,452
Ensembl chr17:7,242,493...7,251,571 		JBrowse link
G DVL3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO (MGI:3821448|PMID:19008950) MGI PMID:19008950 MGI:3821448 NCBI chr 3:181,190,961...181,207,831
Ensembl chr 3:189,674,399...189,693,130 		JBrowse link
G FZD1 frizzled class receptor 1 acts_upstream_of_or_within ISO (MGI:4837757|PMID:20940229) MGI PMID:20940229 MGI:4837757 NCBI chr 7:83,269,906...83,277,608 JBrowse link
G FZD2 frizzled class receptor 2 acts_upstream_of_or_within ISO (MGI:4837757|PMID:20940229) MGI PMID:20940229 MGI:4837757 NCBI chr17:12,839,362...12,843,803 JBrowse link
G GRHL3 grainyhead like transcription factor 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4819429|PMID:20643356) MGI
Ensembl		 PMID:20643356 GO_REF:0000107 MGI:4819429 NCBI chr 1:23,519,911...23,558,105
Ensembl chr 1:24,502,294...24,547,152 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of ISO (MGI:4830282|PMID:19056682) MGI PMID:19056682 MGI:4830282 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G PTK7 protein tyrosine kinase 7 (inactive) acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4830023|PMID:20704721) MGI
Ensembl		 PMID:20704721 GO_REF:0000107 MGI:4830023 NCBI chr 6:42,668,077...42,753,547
Ensembl chr 6:43,962,560...44,051,146 		JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr 8:40,507,027...40,555,053 JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3793375|PMID:18257070) Ensembl
MGI		 PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr 4:146,123,075...146,131,543
Ensembl chr 4:157,944,733...157,953,258 		JBrowse link
G SFRP5 secreted frizzled related protein 5 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr10:94,383,269...94,389,053
Ensembl chr10:97,877,790...97,882,850 		JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3624185|PMID:16571627)
(MGI:4830023|PMID:20704721)
(MGI:3821448|PMID:19008950)
(MGI:4837757|PMID:20940229)
(MGI:4819429|PMID:20643356)
(MGI:3793375|PMID:18257070)		 MGI PMID:16571627 PMID:18257070 PMID:19008950 PMID:20643356 PMID:20704721 More... MGI:3624185 MGI:3793375 MGI:3821448 MGI:4819429 MGI:4830023 MGI:4837757 NCBI chr 1:135,754,897...135,783,031
Ensembl chr 1:139,683,745...139,704,281 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4830282|PMID:19056682) MGI
Ensembl		 PMID:19056682 GO_REF:0000107 MGI:4830282 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051 		JBrowse link
positive regulation of epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGF epidermal growth factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:102,410,724...102,509,691
Ensembl chr 4:112,977,565...113,076,460 		JBrowse link
G FGF2 fibroblast growth factor 2 involved_in ISO (PMID:31915155) BHF-UCL PMID:31915155 NCBI chr 4:115,005,136...115,076,369
Ensembl chr 4:126,149,813...126,214,942 		JBrowse link
G MMRN2 multimerin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:83,363,696...83,396,966
Ensembl chr10:86,920,521...86,942,777 		JBrowse link
G PIK3CD phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:8,418,570...8,495,435
Ensembl chr 1:9,686,208...9,724,633 		JBrowse link
G VEGFA vascular endothelial growth factor A involved_in ISO (PMID:31915155) BHF-UCL PMID:31915155 NCBI chr 6:43,361,053...43,377,366
Ensembl chr 6:44,650,365...44,666,353 		JBrowse link
positive regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA3 GATA binding protein 3 involved_in ISO (MGI:3822373|PMID:19112489) UniProt PMID:19112489 MGI:3822373 NCBI chr10:8,075,951...8,105,573
Ensembl chr10:8,064,207...8,086,272 		JBrowse link
G GDNF glial cell derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:72,539,374...72,566,918
Ensembl chr 5:77,577,313...77,601,362 		JBrowse link
G SIX1 SIX homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:41,250,512...41,256,567
Ensembl chr14:59,515,324...59,527,494 		JBrowse link
G SIX4 SIX homeobox 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:41,316,169...41,332,160
Ensembl chr14:59,580,587...59,594,014 		JBrowse link
regulation of establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SEC24B SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4438817|PMID:19966784) Ensembl
MGI		 PMID:19966784 GO_REF:0000107 MGI:4438817 NCBI chr 4:101,937,119...102,043,038
Ensembl chr 4:112,534,779...112,628,065 		JBrowse link
regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GDNF glial cell derived neurotrophic factor involved_in ISO PMID:19112489 UniProt PMID:19112489 RGD:8656008 NCBI chr 5:72,539,374...72,566,918
Ensembl chr 5:77,577,313...77,601,362 		JBrowse link
roof plate formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GDF7 growth differentiation factor 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1353705|PMID:10693795) MGI
Ensembl		 PMID:10693795 GO_REF:0000107 MGI:1353705 NCBI chr2A:20,651,617...20,664,586 JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:19,333,101...19,340,267
Ensembl chr2A:19,451,067...19,458,229 		JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES5 hes family bHLH transcription factor 5 involved_in ISO (MGI:3576186|PMID:15821257) UniProt PMID:15821257 MGI:3576186 NCBI chr 1:1,261,260...1,263,128 JBrowse link
G IRX1 iroquois homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:3,922,252...3,927,836
Ensembl chr 5:3,610,225...3,615,279 		JBrowse link
G IRX2 iroquois homeobox 2 involved_in ISO (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chr 5:3,081,361...3,087,014 JBrowse link
G IRX3 iroquois homeobox 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:34,514,107...34,517,576
Ensembl chr16:53,622,409...53,624,653 		JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:19,333,101...19,340,267
Ensembl chr2A:19,451,067...19,458,229 		JBrowse link
ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA3 GATA binding protein 3 involved_in ISO (MGI:3611949|PMID:16319112) UniProt PMID:16319112 MGI:3611949 NCBI chr10:8,075,951...8,105,573
Ensembl chr10:8,064,207...8,086,272 		JBrowse link
G GDNF glial cell derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:72,539,374...72,566,918
Ensembl chr 5:77,577,313...77,601,362 		JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in ISO (MGI:3714585|PMID:17522159) UniProt PMID:17522159 MGI:3714585 NCBI chr15:11,213,870...11,230,619 JBrowse link
G HS2ST1 heparan sulfate 2-O-sulfotransferase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1270048|PMID:9637690) MGI
Ensembl		 PMID:9637690 GO_REF:0000107 MGI:1270048 NCBI chr 1:119,432,583...119,630,472
Ensembl chr 1:88,283,872...88,475,198 		JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:50,669,186...50,671,081
Ensembl chr17:55,532,394...55,533,092 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15670
    developmental process 6225
      anatomical structure formation involved in morphogenesis 1210
        tube formation 179
          epithelial tube formation 166
            Malpighian tubule bud morphogenesis 0
            embryonic epithelial tube formation + 154
            endothelial tube formation 0
            mammary gland cord formation 0
            metanephric tubule formation + 6
            negative regulation of epithelial tube formation 0
            nephric duct formation + 5
            otic vesicle formation + 7
            pancreatic bud formation + 0
            positive regulation of epithelial tube formation + 9
            regulation of epithelial tube formation + 9
Path 2
Term Annotations click to browse term
  biological_process 15670
    developmental process 6225
      anatomical structure development 5862
        anatomical structure morphogenesis 2697
          tissue morphogenesis 701
            morphogenesis of an epithelium 591
              epithelial tube morphogenesis 397
                epithelial tube formation 166
                  Malpighian tubule bud morphogenesis 0
                  embryonic epithelial tube formation + 154
                  endothelial tube formation 0
                  mammary gland cord formation 0
                  metanephric tubule formation + 6
                  negative regulation of epithelial tube formation 0
                  nephric duct formation + 5
                  otic vesicle formation + 7
                  pancreatic bud formation + 0
                  positive regulation of epithelial tube formation + 9
                  regulation of epithelial tube formation + 9
paths to the root