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ONTOLOGY REPORT - ANNOTATIONS


Term:metanephric tubule development
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Accession:GO:0072170 term browser browse the term
Definition:The progression of a metanephric tubule over time, from its initial formation to the mature structure. A metanephric tubule is an epithelial tube that is part of the metanephros.


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metanephric tubule development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MTSS1 MTSS I-BAR domain containing 1 ISO (MGI:MGI:5317250|PMID:21406566) MGI PMID:21406566 MGI:MGI:5317250 NCBI chr 4:14,933,290...15,103,256
Ensembl chr 4:14,933,324...15,105,406
JBrowse link
G SOX9 SRY-box transcription factor 9 ISO (PMID:8787755) UniProtKB PMID:8787755 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315
JBrowse link
G WNT9B Wnt family member 9B ISO (MGI:MGI:3588895|PMID:16054034) MGI PMID:16054034 MGI:MGI:3588895 NCBI chr12:17,709,046...17,733,434
Ensembl chr12:17,709,049...17,733,438
JBrowse link
metanephric ascending thin limb development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PKD1 polycystin 1, transient receptor potential channel interacting IEA Ensembl GO_REF:0000107 NCBI chr 3:39,849,579...39,899,455
Ensembl chr 3:39,849,609...39,899,455
JBrowse link
G PKD2 polycystin 2, transient receptor potential cation channel IEA Ensembl GO_REF:0000107 NCBI chr 8:131,002,973...131,058,932
Ensembl chr 8:131,005,407...131,058,932
JBrowse link
G POU3F1 POU class 3 homeobox 1 ISS UniProt GO_REF:0000024 NCBI chr 6:94,025,133...94,028,053
Ensembl chr 6:94,026,675...94,028,030
JBrowse link
G POU3F3 POU class 3 homeobox 3 IEA Ensembl GO_REF:0000107 NCBI chr 3:49,804,112...49,807,730
Ensembl chr 3:49,806,161...49,807,666
JBrowse link
G UMOD uromodulin IEA Ensembl GO_REF:0000107 NCBI chr 3:25,473,048...25,492,286
Ensembl chr 3:25,473,162...25,492,283
JBrowse link
metanephric connecting tubule development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CALB1 calbindin 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:46,701,276...46,723,548
Ensembl chr 4:46,701,045...46,725,198
JBrowse link
metanephric DCT cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POU3F1 POU class 3 homeobox 1 ISS UniProt GO_REF:0000024 NCBI chr 6:94,025,133...94,028,053
Ensembl chr 6:94,026,675...94,028,030
JBrowse link
G POU3F3 POU class 3 homeobox 3 IEA Ensembl GO_REF:0000107 NCBI chr 3:49,804,112...49,807,730
Ensembl chr 3:49,806,161...49,807,666
JBrowse link
metanephric descending thin limb development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AQP1 aquaporin 1 (Colton blood group) IEA Ensembl GO_REF:0000107 NCBI chr18:42,063,482...42,076,741 JBrowse link
metanephric distal convoluted tubule development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CALB1 calbindin 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:46,701,276...46,723,548
Ensembl chr 4:46,701,045...46,725,198
JBrowse link
G PAX2 paired box 2 ISO (MGI:MGI:3704067|PMID:17314325) UniProtKB PMID:17314325 MGI:MGI:3704067 NCBI chr14:111,822,334...111,914,950
Ensembl chr14:111,834,168...111,914,304
JBrowse link
G UMOD uromodulin IEA Ensembl GO_REF:0000107 NCBI chr 3:25,473,048...25,492,286
Ensembl chr 3:25,473,162...25,492,283
JBrowse link
metanephric distal tubule development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PKD2 polycystin 2, transient receptor potential cation channel IEA Ensembl GO_REF:0000107 NCBI chr 8:131,002,973...131,058,932
Ensembl chr 8:131,005,407...131,058,932
JBrowse link
metanephric distal tubule morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PKD1 polycystin 1, transient receptor potential channel interacting IEA Ensembl GO_REF:0000107 NCBI chr 3:39,849,579...39,899,455
Ensembl chr 3:39,849,609...39,899,455
JBrowse link
metanephric loop of Henle development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POU3F1 POU class 3 homeobox 1 ISS UniProt GO_REF:0000024 NCBI chr 6:94,025,133...94,028,053
Ensembl chr 6:94,026,675...94,028,030
JBrowse link
G POU3F3 POU class 3 homeobox 3 ISO (MGI:MGI:2669573|PMID:12925600) UniProtKB PMID:12925600 MGI:MGI:2669573 NCBI chr 3:49,804,112...49,807,730
Ensembl chr 3:49,806,161...49,807,666
JBrowse link
G WNT7B Wnt family member 7B ISO (MGI:MGI:3821953|PMID:19060336) MGI PMID:19060336 MGI:MGI:3821953 NCBI chr 5:3,521,412...3,572,322
Ensembl chr 5:3,521,695...3,572,314
JBrowse link
metanephric nephron tubule development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,521,296...118,932,446
JBrowse link
metanephric nephron tubule formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX2 paired box 2 ISO (MGI:MGI:3704067|PMID:17314325) UniProtKB PMID:17314325 MGI:MGI:3704067 NCBI chr14:111,822,334...111,914,950
Ensembl chr14:111,834,168...111,914,304
JBrowse link
G SOX8 SRY-box transcription factor 8 IEA Ensembl GO_REF:0000107 NCBI chr 3:40,825,151...40,830,085
Ensembl chr 3:40,710,043...40,830,737
JBrowse link
G SOX9 SRY-box transcription factor 9 ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315
JBrowse link
metanephric nephron tubule morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES1 hes family bHLH transcription factor 1 IEA Ensembl GO_REF:0000107 NCBI chr13:131,135,970...131,137,865
Ensembl chr13:131,135,724...131,138,236
JBrowse link
G HES5 hes family bHLH transcription factor 5 IEA Ensembl GO_REF:0000107 NCBI chr 6:64,409,110...64,410,541
Ensembl chr 6:64,409,115...64,411,006
JBrowse link
G LGR4 leucine rich repeat containing G protein-coupled receptor 4 IEA Ensembl GO_REF:0000107 NCBI chr 2:32,871,837...32,979,150
Ensembl chr 2:32,871,871...32,979,148
JBrowse link
metanephric proximal convoluted tubule development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAT1 acetyl-CoA acetyltransferase 1 ISO RGD PMID:7733320 RGD:2326090 NCBI chr 9:36,525,266...36,545,634
Ensembl chr 9:36,525,261...36,545,633
JBrowse link
metanephric proximal convoluted tubule segment 2 development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AQP1 aquaporin 1 (Colton blood group) IEA Ensembl GO_REF:0000107 NCBI chr18:42,063,482...42,076,741 JBrowse link
metanephric proximal straight tubule development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AQP1 aquaporin 1 (Colton blood group) IEA Ensembl GO_REF:0000107 NCBI chr18:42,063,482...42,076,741 JBrowse link
metanephric proximal tubule development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PKD1 polycystin 1, transient receptor potential channel interacting IEA Ensembl GO_REF:0000107 NCBI chr 3:39,849,579...39,899,455
Ensembl chr 3:39,849,609...39,899,455
JBrowse link
metanephric thick ascending limb development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POU3F1 POU class 3 homeobox 1 ISS UniProt GO_REF:0000024 NCBI chr 6:94,025,133...94,028,053
Ensembl chr 6:94,026,675...94,028,030
JBrowse link
G POU3F3 POU class 3 homeobox 3 IEA Ensembl GO_REF:0000107 NCBI chr 3:49,804,112...49,807,730
Ensembl chr 3:49,806,161...49,807,666
JBrowse link
G UMOD uromodulin IEA Ensembl GO_REF:0000107 NCBI chr 3:25,473,048...25,492,286
Ensembl chr 3:25,473,162...25,492,283
JBrowse link
metanephric tubule formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT4 Wnt family member 4 ISO (MGI:MGI:4950307|PMID:21350016) MGI PMID:21350016 MGI:MGI:4950307 NCBI chr 6:80,110,238...80,138,165 JBrowse link
G WNT9B Wnt family member 9B IEA Ensembl GO_REF:0000107 NCBI chr12:17,709,046...17,733,434
Ensembl chr12:17,709,049...17,733,438
JBrowse link
metanephric tubule morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CXCR2 C-X-C motif chemokine receptor 2 ISO RGD PMID:17634442 RGD:7257700 NCBI chr15:120,219,657...120,230,203 JBrowse link
negative regulation of apoptotic process involved in metanephric nephron tubule development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX2 paired box 2 ISO (MGI:MGI:3704067|PMID:17314325) UniProtKB PMID:17314325 MGI:MGI:3704067 NCBI chr14:111,822,334...111,914,950
Ensembl chr14:111,834,168...111,914,304
JBrowse link
negative regulation of metanephric nephron tubule epithelial cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STAT1 signal transducer and activator of transcription 1 ISS UniProt GO_REF:0000024 NCBI chr15:95,593,201...95,646,324
Ensembl chr15:95,593,211...95,646,260
JBrowse link
positive regulation of metanephric DCT cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX2 paired box 2 ISO (MGI:MGI:3704067|PMID:17314325) UniProtKB PMID:17314325 MGI:MGI:3704067 NCBI chr14:111,822,334...111,914,950
Ensembl chr14:111,834,168...111,914,304
JBrowse link
regulation of metanephric nephron tubule epithelial cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAT4 FAT atypical cadherin 4 ISO (MGI:MGI:5514437|PMID:23974041) MGI PMID:23974041 MGI:MGI:5514437 NCBI chr 8:99,141,967...99,312,131 JBrowse link
G LIF LIF interleukin 6 family cytokine IEA Ensembl GO_REF:0000107 NCBI chr14:47,221,540...47,239,513
Ensembl chr14:47,221,560...47,238,749
JBrowse link
G PAX2 paired box 2 ISO (MGI:MGI:3704067|PMID:17314325) UniProtKB PMID:17314325 MGI:MGI:3704067 NCBI chr14:111,822,334...111,914,950
Ensembl chr14:111,834,168...111,914,304
JBrowse link
G WWTR1 WW domain containing transcription regulator 1 IEA Ensembl GO_REF:0000107 NCBI chr13:89,742,980...89,889,547
Ensembl chr13:89,742,893...89,889,187
JBrowse link
G YAP1 Yes1 associated transcriptional regulator IEA Ensembl GO_REF:0000107 NCBI chr 9:32,811,629...32,924,926
Ensembl chr 9:32,811,416...32,925,603
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16545
    developmental process 6302
      anatomical structure development 5842
        tube development 1175
          metanephric tubule development 25
            metanephric nephron tubule development + 21
            metanephric tubule morphogenesis + 10
Path 2
Term Annotations click to browse term
  biological_process 16545
    developmental process 6302
      anatomical structure development 5842
        multicellular organism development 5340
          system development 4963
            urogenital system development 423
              renal system development 373
                kidney development 360
                  metanephros development 99
                    metanephric epithelium development 30
                      metanephric tubule development 25
                        metanephric nephron tubule development + 21
                        metanephric tubule morphogenesis + 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.