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ONTOLOGY REPORT - ANNOTATIONS


Term:mesenchyme morphogenesis
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Accession:GO:0072132 term browser browse the term
Definition:The process in which the anatomical structures of a mesenchymal tissue are generated and organized. A mesenchymal tissue is made up of loosely packed stellate cells.



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mesenchyme morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin (cadherin associated protein), beta 1 involved_in TAS (MGI:4943617|PMID:20299672) DFLAT PMID:20299672 MGI:4943617 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
apoptotic process involved in endocardial cushion morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 NOT|involved_in IMP (MGI:3814273|PMID:18924235) BHF-UCL PMID:18924235 MGI:3814273 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
cell migration involved in endocardial cushion formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dchs1 dachsous cadherin related 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:105,752,989...105,788,355
Ensembl chr 7:105,752,990...105,787,654
JBrowse link
G Eng endoglin acts_upstream_of_or_within IMP (MGI:4368063|PMID:19703439) MGI PMID:19703439 MGI:4368063 NCBI chr 2:32,646,595...32,682,669
Ensembl chr 2:32,646,595...32,682,669
JBrowse link
G Notch1 notch 1 involved_in IMP (MGI:4837019|PMID:20890042) BHF-UCL PMID:20890042 MGI:4837019 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
G Snai2 snail family zinc finger 2 involved_in IMP (MGI:3808643|PMID:18663143) BHF-UCL PMID:18663143 MGI:3808643 NCBI chr16:14,705,852...14,709,395
Ensembl chr16:14,705,852...14,709,385
JBrowse link
cell proliferation involved in endocardial cushion morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgfbr2 transforming growth factor, beta receptor II NOT|involved_in IMP (MGI:4821522|PMID:20652948) BHF-UCL PMID:20652948 MGI:4821522 NCBI chr 9:116,087,695...116,175,363
Ensembl chr 9:116,084,293...116,175,360
JBrowse link
endocardial cushion formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplnr apelin receptor involved_in IMP (MGI:5584055|PMID:23603510) BHF-UCL PMID:23603510 MGI:5584055 NCBI chr 2:85,136,360...85,139,923
Ensembl chr 2:85,136,225...85,139,923
JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in IMP (MGI:3640731|PMID:16730346) BHF-UCL PMID:16730346 MGI:3640731 NCBI chr 2:133,552,159...133,562,896
Ensembl chr 2:133,552,159...133,562,885
JBrowse link
G Bmp5 bone morphogenetic protein 5 involved_in IGI (MGI:1332253|PMID:10079236) BHF-UCL PMID:10079236 MGI:1332253 NCBI chr 9:75,775,365...75,900,316
Ensembl chr 9:75,775,364...75,900,310
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in IGI (MGI:1332253|PMID:10079236) BHF-UCL PMID:10079236 MGI:1332253 NCBI chr 2:172,868,012...172,940,321
Ensembl chr 2:172,868,012...172,940,321
JBrowse link
G Bmpr1a bone morphogenetic protein receptor, type 1A acts_upstream_of_or_within IMP (MGI:3611958|PMID:16314491) MGI PMID:16314491 MGI:3611958 NCBI chr14:34,411,061...34,503,336
Ensembl chr14:34,410,734...34,503,341
JBrowse link
G Robo1 roundabout guidance receptor 1 involved_in IGI (MGI:5913048|PMID:25691540) BHF-UCL PMID:25691540 MGI:5913048 NCBI chr16:72,027,518...73,047,491
Ensembl chr16:72,308,306...73,046,095
JBrowse link
G Robo2 roundabout guidance receptor 2 involved_in IGI (MGI:5913048|PMID:25691540) BHF-UCL PMID:25691540 MGI:5913048 NCBI chr16:73,891,976...75,447,443
Ensembl chr16:73,891,839...74,411,825
JBrowse link
G Tbx2 T-box 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:85,832,615...85,841,948
Ensembl chr11:85,832,551...85,841,948
JBrowse link
G Tbx20 T-box 20 involved_in IMP (MGI:3604925|PMID:15843409), (MGI:5299248|PMID:21983003) BHF-UCL PMID:15843409 PMID:21983003 MGI:3604925 MGI:5299248 NCBI chr 9:24,720,812...24,774,303
Ensembl chr 9:24,718,138...24,774,303
JBrowse link
G Tbx3 T-box 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:119,670,534...119,684,724
Ensembl chr 5:119,670,669...119,684,724
JBrowse link
endocardial cushion fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor, type 1 involved_in IMP (MGI:3610266|PMID:16140292) BHF-UCL PMID:16140292 MGI:3610266 NCBI chr 2:58,446,438...58,566,828
Ensembl chr 2:58,388,644...58,567,157
JBrowse link
G Gata5 GATA binding protein 5 involved_in IMP (MGI:5286818|PMID:21633169) BHF-UCL PMID:21633169 MGI:5286818 NCBI chr 2:180,325,088...180,335,503
Ensembl chr 2:180,325,133...180,334,699
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in IMP (MGI:3609313|PMID:11390347) BHF-UCL PMID:11390347 MGI:3609313 NCBI chr 1:186,622,787...186,709,697
Ensembl chr 1:186,622,792...186,705,989
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II involved_in IMP (MGI:4821522|PMID:20652948) BHF-UCL PMID:20652948 MGI:4821522 NCBI chr 9:116,087,695...116,175,363
Ensembl chr 9:116,084,293...116,175,360
JBrowse link
endocardial cushion morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor, type 1 involved_in IMP (MGI:3610266|PMID:16140292) BHF-UCL PMID:16140292 MGI:3610266 NCBI chr 2:58,446,438...58,566,828
Ensembl chr 2:58,388,644...58,567,157
JBrowse link
G Acvrl1 activin A receptor, type II-like 1 involved_in IMP (MGI:2674189|PMID:12941632) BHF-UCL PMID:12941632 MGI:2674189 NCBI chr15:101,128,522...101,145,336
Ensembl chr15:101,128,522...101,145,336
JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within
IMP (MGI:4837019|PMID:20890042)
(MGI:3611958|PMID:16314491)
BHF-UCL
MGI
PMID:16314491 PMID:20890042 MGI:3611958 MGI:4837019 NCBI chr 2:133,552,159...133,562,896
Ensembl chr 2:133,552,159...133,562,885
JBrowse link
G Bmpr1a bone morphogenetic protein receptor, type 1A involved_in IMP (MGI:2175930|PMID:11854453), (MGI:3040576|PMID:15073157) BHF-UCL PMID:11854453 PMID:15073157 MGI:2175930 MGI:3040576 NCBI chr14:34,411,061...34,503,336
Ensembl chr14:34,410,734...34,503,341
JBrowse link
G Eng endoglin involved_in IMP (MGI:2674189|PMID:12941632), (MGI:4368063|PMID:19703439) BHF-UCL PMID:12941632 PMID:19703439 MGI:2674189 MGI:4368063 NCBI chr 2:32,646,595...32,682,669
Ensembl chr 2:32,646,595...32,682,669
JBrowse link
G Hey1 hairy/enhancer-of-split related with YRPW motif 1 involved_in IGI (MGI:3783952|PMID:17303760) BHF-UCL PMID:17303760 MGI:3783952 NCBI chr 3:8,663,359...8,667,038
Ensembl chr 3:8,663,359...8,667,256
JBrowse link
G Heyl hairy/enhancer-of-split related with YRPW motif-like involved_in IGI (MGI:3783952|PMID:17303760) BHF-UCL PMID:17303760 MGI:3783952 NCBI chr 4:123,233,556...123,249,870
Ensembl chr 4:123,233,556...123,249,875
JBrowse link
G Isl1 ISL1 transcription factor, LIM/homeodomain involved_in IGI (MGI:3829137|PMID:17519333) BHF-UCL PMID:17519333 MGI:3829137 NCBI chr13:116,298,270...116,309,688
Ensembl chr13:116,298,281...116,309,689
JBrowse link
G Mdm2 transformed mouse 3T3 cell double minute 2 acts_upstream_of_or_within IMP
IGI
(MGI:5440773|PMID:22821713) MGI PMID:22821713 MGI:5440773 NCBI chr10:117,688,875...117,710,758
Ensembl chr10:117,688,875...117,710,758
JBrowse link
G Mdm4 transformed mouse 3T3 cell double minute 4 acts_upstream_of_or_within IGI (MGI:5440773|PMID:22821713) MGI PMID:22821713 MGI:5440773 NCBI chr 1:132,986,105...133,030,587
Ensembl chr 1:132,959,484...133,030,561
JBrowse link
G Nog noggin involved_in IMP (MGI:3783944|PMID:17218603) BHF-UCL PMID:17218603 MGI:3783944 NCBI chr11:89,300,638...89,302,559
Ensembl chr11:89,300,638...89,302,332
JBrowse link
G Nos3 nitric oxide synthase 3, endothelial cell involved_in IGI (MGI:6158784|PMID:27107132) BHF-UCL PMID:27107132 MGI:6158784 NCBI chr 5:24,364,816...24,384,474
Ensembl chr 5:24,364,810...24,384,474
JBrowse link
G Notch1 notch 1 involved_in IGI
IMP
(MGI:6158784|PMID:27107132)
(MGI:3027664|PMID:14701881)
BHF-UCL PMID:14701881 PMID:27107132 MGI:3027664 MGI:6158784 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 acts_upstream_of_or_within IMP (MGI:3709802|PMID:11951052) MGI PMID:11951052 MGI:3709802 NCBI chr11:112,782,210...112,787,757
Ensembl chr11:112,782,224...112,787,760
JBrowse link
G Tbx2 T-box 2 involved_in IMP (MGI:3487212|PMID:15459098) BHF-UCL PMID:15459098 MGI:3487212 NCBI chr11:85,832,615...85,841,948
Ensembl chr11:85,832,551...85,841,948
JBrowse link
G Tbx20 T-box 20 involved_in IMP (MGI:3579960|PMID:15901664) BHF-UCL PMID:15901664 MGI:3579960 NCBI chr 9:24,720,812...24,774,303
Ensembl chr 9:24,718,138...24,774,303
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in IMP (MGI:3609313|PMID:11390347), (MGI:3830400|PMID:19161227) BHF-UCL PMID:11390347 PMID:19161227 MGI:3609313 MGI:3830400 NCBI chr 1:186,622,787...186,709,697
Ensembl chr 1:186,622,792...186,705,989
JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 acts_upstream_of_or_within IMP (MGI:3805126|PMID:18539270) MGI PMID:18539270 MGI:3805126 NCBI chr12:33,957,671...33,959,831
Ensembl chr12:33,957,671...33,959,829
JBrowse link
epithelial to mesenchymal transition involved in endocardial cushion formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 NOT|involved_in IMP (MGI:3814273|PMID:18924235) BHF-UCL PMID:18924235 MGI:3814273 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
G Eng endoglin involved_in IMP (MGI:4368063|PMID:19703439) BHF-UCL PMID:19703439 MGI:4368063 NCBI chr 2:32,646,595...32,682,669
Ensembl chr 2:32,646,595...32,682,669
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within
involved_in
IDA
IMP
(MGI:5002778|PMID:21364285)
(MGI:4359139|PMID:19509466)
MGI
BHF-UCL
PMID:19509466 PMID:21364285 MGI:4359139 MGI:5002778 NCBI chr19:45,736,491...45,742,941
Ensembl chr19:45,736,798...45,742,915
JBrowse link
G Hey1 hairy/enhancer-of-split related with YRPW motif 1 acts_upstream_of_or_within IGI (MGI:3783952|PMID:17303760) MGI PMID:17303760 MGI:3783952 NCBI chr 3:8,663,359...8,667,038
Ensembl chr 3:8,663,359...8,667,256
JBrowse link
G Heyl hairy/enhancer-of-split related with YRPW motif-like acts_upstream_of_or_within IGI (MGI:3783952|PMID:17303760) MGI PMID:17303760 MGI:3783952 NCBI chr 4:123,233,556...123,249,870
Ensembl chr 4:123,233,556...123,249,875
JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within IGI (MGI:3810851|PMID:18667074) MGI PMID:18667074 MGI:3810851 NCBI chr 5:37,820,491...37,824,585
Ensembl chr 5:37,820,485...37,824,583
JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within IGI (MGI:3810851|PMID:18667074) MGI PMID:18667074 MGI:3810851 NCBI chr13:53,466,881...53,472,780
Ensembl chr13:53,466,884...53,473,074
JBrowse link
G Notch1 notch 1 involved_in IMP (MGI:3027664|PMID:14701881) BHF-UCL PMID:14701881 MGI:3027664 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region involved_in IMP (MGI:3027664|PMID:14701881) BHF-UCL PMID:14701881 MGI:3027664 NCBI chr 5:53,555,779...53,657,445
Ensembl chr 5:53,466,152...53,657,362
JBrowse link
G Smad4 SMAD family member 4 involved_in IMP (MGI:4946551|PMID:21330551) BHF-UCL PMID:21330551 MGI:4946551 NCBI chr18:73,634,790...73,703,791
Ensembl chr18:73,639,009...73,703,780
JBrowse link
G Snai1 snail family zinc finger 1 involved_in IGI (MGI:3808643|PMID:18663143) BHF-UCL PMID:18663143 MGI:3808643 NCBI chr 2:167,538,195...167,542,814
Ensembl chr 2:167,538,195...167,542,814
JBrowse link
G Snai2 snail family zinc finger 2 acts_upstream_of_or_within IMP (MGI:3808643|PMID:18663143) MGI PMID:18663143 MGI:3808643 NCBI chr16:14,705,852...14,709,395
Ensembl chr16:14,705,852...14,709,385
JBrowse link
G Tmem100 transmembrane protein 100 acts_upstream_of_or_within IMP (MGI:5613881|PMID:25318679) MGI PMID:25318679 MGI:5613881 NCBI chr11:90,030,348...90,036,508
Ensembl chr11:90,030,348...90,036,508
JBrowse link
inferior endocardial cushion morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgfbr2 transforming growth factor, beta receptor II involved_in IMP (MGI:3801267|PMID:17050629) BHF-UCL PMID:17050629 MGI:3801267 NCBI chr 9:116,087,695...116,175,363
Ensembl chr 9:116,084,293...116,175,360
JBrowse link
lateral mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 acts_upstream_of_or_within IMP (MGI:1928688|PMID:11124112) MGI PMID:11124112 MGI:1928688 NCBI chr 8:121,084,386...121,088,154
Ensembl chr 8:121,084,386...121,088,144
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in IMP (MGI:5918349|PMID:28893950) MGI PMID:28893950 MGI:5918349 NCBI chr 7:105,742,894...105,744,375
Ensembl chr 7:105,739,393...105,744,361
JBrowse link
mesenchyme migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 acts_upstream_of_or_within IMP (MGI:3709924|PMID:17261592) MGI PMID:17261592 MGI:3709924 NCBI chr 8:121,084,386...121,088,154
Ensembl chr 8:121,084,386...121,088,144
JBrowse link
metanephric cap mesenchymal cell proliferation involved in metanephros development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IMP (MGI:3826342|PMID:18835385) UniProt PMID:18835385 MGI:3826342 NCBI chr12:9,574,442...9,581,500
Ensembl chr12:9,570,116...9,581,500
JBrowse link
metanephric mesenchyme morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 involved_in IGI (MGI:3623046|PMID:15342483) UniProt PMID:15342483 MGI:3623046 NCBI chr 2:172,868,012...172,940,321
Ensembl chr 2:172,868,012...172,940,321
JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in IMP (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chr12:9,574,442...9,581,500
Ensembl chr12:9,570,116...9,581,500
JBrowse link
G Smad4 SMAD family member 4 involved_in IMP (MGI:3623046|PMID:15342483) UniProt PMID:15342483 MGI:3623046 NCBI chr18:73,634,790...73,703,791
Ensembl chr18:73,639,009...73,703,780
JBrowse link
negative regulation of epithelial to mesenchymal transition involved in endocardial cushion formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nog noggin involved_in IMP (MGI:3783944|PMID:17218603) BHF-UCL PMID:17218603 MGI:3783944 NCBI chr11:89,300,638...89,302,559
Ensembl chr11:89,300,638...89,302,332
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in IMP (MGI:3830400|PMID:19161227) BHF-UCL PMID:19161227 MGI:3830400 NCBI chr 1:186,622,787...186,709,697
Ensembl chr 1:186,622,792...186,705,989
JBrowse link
nephrogenic mesenchyme morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 involved_in IGI (MGI:3623046|PMID:15342483) UniProt PMID:15342483 MGI:3623046 NCBI chr 2:172,868,012...172,940,321
Ensembl chr 2:172,868,012...172,940,321
JBrowse link
G Smad4 SMAD family member 4 involved_in IMP (MGI:3623046|PMID:15342483) UniProt PMID:15342483 MGI:3623046 NCBI chr18:73,634,790...73,703,791
Ensembl chr18:73,639,009...73,703,780
JBrowse link
paraxial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exoc4 exocyst complex component 4 acts_upstream_of_or_within IMP (MGI:1195048|PMID:9441674) MGI PMID:9441674 MGI:1195048 NCBI chr 6:33,249,090...33,973,979
Ensembl chr 6:33,249,085...33,973,979
JBrowse link
G Foxc1 forkhead box C1 involved_in
acts_upstream_of_or_within
IMP
IGI
(MGI:3047050|PMID:15196959)
(MGI:2150572|PMID:11562355)
UniProt
MGI
PMID:11562355 PMID:15196959 MGI:2150572 MGI:3047050 NCBI chr13:31,806,646...31,810,635
Ensembl chr13:31,806,633...31,812,476
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within IGI (MGI:2150572|PMID:11562355) MGI PMID:11562355 MGI:2150572 NCBI chr 8:121,116,171...121,118,895
Ensembl chr 8:121,116,171...121,118,895
JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within IGI (MGI:1334099|PMID:10090727) MGI PMID:10090727 MGI:1334099 NCBI chr 5:114,948,980...114,971,062
Ensembl chr 5:114,948,980...114,971,094
JBrowse link
G Htt huntingtin acts_upstream_of_or_within IMP (MGI:3609520|PMID:16109169) MGI PMID:16109169 MGI:3609520 NCBI chr 5:34,761,721...34,912,534
Ensembl chr 5:34,761,740...34,912,534
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within IGI (MGI:1334099|PMID:10090727) MGI PMID:10090727 MGI:1334099 NCBI chr 3:131,110,297...131,224,357
Ensembl chr 3:131,110,471...131,224,356
JBrowse link
G Wnt11 wingless-type MMTV integration site family, member 11 acts_upstream_of_or_within IGI (MGI:5634837|PMID:25813538) MGI PMID:25813538 MGI:5634837 NCBI chr 7:98,835,084...98,854,747
Ensembl chr 7:98,835,112...98,855,195
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IGI (MGI:5634837|PMID:25813538) MGI PMID:25813538 MGI:5634837 NCBI chr14:28,504,543...28,527,448
Ensembl chr14:28,504,750...28,527,448
JBrowse link
paraxial mesoderm morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within IMP (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr 2:80,500,512...80,581,182
Ensembl chr 2:80,500,512...80,581,380
JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within IMP (MGI:3039049|PMID:15084457) MGI PMID:15084457 MGI:3039049 NCBI chr18:76,241,090...76,311,748
Ensembl chr18:76,241,580...76,310,963
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within IMP (MGI:3039049|PMID:15084457) MGI PMID:15084457 MGI:3039049 NCBI chr 9:63,646,766...63,757,994
Ensembl chr 9:63,646,767...63,757,994
JBrowse link
paraxial mesoderm structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor, type 1A acts_upstream_of_or_within IMP (MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:3702797 NCBI chr14:34,411,061...34,503,336
Ensembl chr14:34,410,734...34,503,341
JBrowse link
paraxial mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc2 forkhead box C2 acts_upstream_of_or_within IMP (MGI:86990|PMID:9106663) MGI PMID:9106663 MGI:86990 NCBI chr 8:121,116,171...121,118,895
Ensembl chr 8:121,116,171...121,118,895
JBrowse link
G Wnt3a wingless-type MMTV integration site family, member 3A acts_upstream_of_or_within IMP (MGI:86727|PMID:9126297) MGI PMID:9126297 MGI:86727 NCBI chr11:59,248,036...59,290,751
Ensembl chr11:59,248,033...59,290,752
JBrowse link
positive regulation of epithelial to mesenchymal transition involved in endocardial cushion formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor, type 1 involved_in IMP (MGI:3610266|PMID:16140292) BHF-UCL PMID:16140292 MGI:3610266 NCBI chr 2:58,446,438...58,566,828
Ensembl chr 2:58,388,644...58,567,157
JBrowse link
G Eng endoglin involved_in IMP (MGI:4368063|PMID:19703439) BHF-UCL PMID:19703439 MGI:4368063 NCBI chr 2:32,646,595...32,682,669
Ensembl chr 2:32,646,595...32,682,669
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in IMP (MGI:3830400|PMID:19161227) BHF-UCL PMID:19161227 MGI:3830400 NCBI chr 1:186,622,787...186,709,697
Ensembl chr 1:186,622,792...186,705,989
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor I involved_in IMP (MGI:3820811|PMID:18718461) BHF-UCL PMID:18718461 MGI:3820811 NCBI chr 4:47,353,222...47,414,926
Ensembl chr 4:47,353,222...47,414,931
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II involved_in IMP (MGI:3801267|PMID:17050629) BHF-UCL PMID:17050629 MGI:3801267 NCBI chr 9:116,087,695...116,175,363
Ensembl chr 9:116,084,293...116,175,360
JBrowse link
positive regulation of metanephric cap mesenchymal cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myc myelocytomatosis oncogene involved_in IMP (MGI:3830398|PMID:19161241) UniProt PMID:19161241 MGI:3830398 NCBI chr15:61,985,341...61,990,361
Ensembl chr15:61,985,391...61,990,374
JBrowse link
regulation of epithelial to mesenchymal transition involved in endocardial cushion formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgfb1 transforming growth factor, beta 1 NOT|involved_in IMP (MGI:3830400|PMID:19161227) BHF-UCL PMID:19161227 MGI:3830400 NCBI chr 7:25,687,002...25,705,077
Ensembl chr 7:25,687,002...25,705,077
JBrowse link
G Tgfb3 transforming growth factor, beta 3 NOT|involved_in IMP (MGI:3830400|PMID:19161227) BHF-UCL PMID:19161227 MGI:3830400 NCBI chr12:86,056,743...86,079,041
Ensembl chr12:86,056,745...86,079,041
JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor, type 1A acts_upstream_of_or_within IGI (MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:3702797 NCBI chr14:34,411,061...34,503,336
Ensembl chr14:34,410,734...34,503,341
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within IGI (MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:3702797 NCBI chr 8:25,518,759...25,575,718
Ensembl chr 8:25,513,654...25,575,718
JBrowse link
superior endocardial cushion morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgfbr2 transforming growth factor, beta receptor II NOT|involved_in IMP (MGI:3801267|PMID:17050629) BHF-UCL PMID:17050629 MGI:3801267 NCBI chr 9:116,087,695...116,175,363
Ensembl chr 9:116,084,293...116,175,360
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28615
    developmental process 7145
      anatomical structure morphogenesis 2962
        animal organ morphogenesis 1178
          mesenchyme morphogenesis 57
            endocardial cushion morphogenesis + 39
            kidney mesenchyme morphogenesis + 4
            lateral mesoderm morphogenesis + 4
            mesenchyme migration + 1
            paraxial mesoderm morphogenesis + 13
Path 2
Term Annotations click to browse term
  biological_process 28615
    developmental process 7145
      anatomical structure development 6528
        multicellular organism development 5880
          system development 5508
            animal organ development 4243
              animal organ morphogenesis 1178
                mesenchyme morphogenesis 57
                  endocardial cushion morphogenesis + 39
                  kidney mesenchyme morphogenesis + 4
                  lateral mesoderm morphogenesis + 4
                  mesenchyme migration + 1
                  paraxial mesoderm morphogenesis + 13
paths to the root