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ONTOLOGY REPORT - ANNOTATIONS


Term:nephron epithelium morphogenesis
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Accession:GO:0072088 term browser browse the term
Definition:The process in which the anatomical structures of the nephron epithelium are generated and organized. The nephron epithelium is a tissue that covers the surface of a nephron.


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branch elongation involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf1 fibroblast growth factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:11,590,687...11,684,410 JBrowse link
branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts16 ADAM metallopeptidase with thrombospondin type 1 motif 16 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5504318|PMID:23661704) MGI
Ensembl
PMID:23661704 GO_REF:0000107 MGI:5504318 NCBI chrNW_004936634:1,830,252...1,925,622 JBrowse link
G Agt angiotensinogen NOT|acts_upstream_of_or_within ISO (MGI:77583|PMID:8675666)
(MGI:2655949|PMID:12657564)
MGI PMID:8675666 PMID:12657564 MGI:2655949 MGI:77583 NCBI chrNW_004936484:19,713,299...19,721,144 JBrowse link
G Bcl2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3036971|PMID:14699151)
(MGI:3768986|PMID:16672320)
MGI
Ensembl
PMID:14699151 PMID:16672320 GO_REF:0000107 MGI:3036971 MGI:3768986 NCBI chrNW_004936497:2,209,136...2,373,580 JBrowse link
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3583399|PMID:15925496) MGI
Ensembl
PMID:15925496 GO_REF:0000107 MGI:3583399 NCBI chrNW_004936485:12,428,765...12,439,570 JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3714585|PMID:17522159) MGI
Ensembl
PMID:17522159 GO_REF:0000107 MGI:3714585 NCBI chrNW_004936697:1,054,237...1,061,468 JBrowse link
G Cd44 CD44 molecule (Indian blood group) acts_upstream_of_or_within ISO (MGI:2449954|PMID:10926769) MGI PMID:10926769 MGI:2449954 NCBI chrNW_004936533:2,949,026...3,033,166 JBrowse link
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in
NOT|involved_in
ISO PMID:15843474
(MGI:3717986|PMID:17615577)
UniProt PMID:15843474 PMID:17615577 MGI:3717986 RGD:8554075 NCBI chrNW_004936762:1,387,354...1,392,955 JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 NOT|involved_in ISO (MGI:3717986|PMID:17615577) UniProt PMID:17615577 MGI:3717986 NCBI chrNW_004936560:6,353,901...6,356,749 JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3714576|PMID:17537789) MGI
Ensembl
PMID:17537789 GO_REF:0000107 MGI:3714576 NCBI chrNW_004936473:29,999,542...30,034,610 JBrowse link
G Dchs1 dachsous cadherin-related 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4939936|PMID:21303848) MGI
Ensembl
PMID:21303848 GO_REF:0000107 MGI:4939936 NCBI chrNW_004936842:677,416...697,013 JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3688770|PMID:16105026)
(MGI:3699022|PMID:17172448)
(MGI:3709697|PMID:17435047)
MGI
Ensembl
PMID:16105026 PMID:17172448 PMID:17435047 GO_REF:0000107 MGI:3688770 MGI:3699022 MGI:3709697 NCBI chrNW_004936833:551,989...843,064 JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2662002|PMID:12783782) MGI
Ensembl
PMID:12783782 GO_REF:0000107 MGI:2662002 NCBI chrNW_004936648:395,526...546,705 JBrowse link
G Fat4 FAT atypical cadherin 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4939936|PMID:21303848) MGI
Ensembl
PMID:21303848 GO_REF:0000107 MGI:4939936 NCBI chrNW_004936662:3,537,917...3,704,012 JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3603080|PMID:16049111) MGI
Ensembl
PMID:16049111 GO_REF:0000107 MGI:3603080 NCBI chrNW_004936600:4,004,847...4,010,626 JBrowse link
G Gdnf glial cell derived neurotrophic factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2675756|PMID:13678594), (MGI:4949995|PMID:21281623) MGI
Ensembl
PMID:13678594 PMID:21281623 GO_REF:0000107 MGI:2675756 MGI:4949995 NCBI chrNW_004936518:4,291,391...4,310,752 JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3611729|PMID:16396903) MGI
Ensembl
PMID:16396903 GO_REF:0000107 MGI:3611729 NCBI chrNW_004936478:17,129,922...17,403,630 JBrowse link
G Gpc3 glypican 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3583399|PMID:15925496) MGI
Ensembl
PMID:15925496 GO_REF:0000107 MGI:3583399 NCBI chrNW_004936691:1,060,013...1,459,736 JBrowse link
G Greb1l GREB1 like retinoic acid receptor coactivator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:6094060|PMID:29100091) MGI
Ensembl
PMID:29100091 GO_REF:0000107 MGI:6094060 NCBI chrNW_004936550:1,110,679...1,240,463 JBrowse link
G Gzf1 GDNF inducible zinc finger protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2683817|PMID:14522971) MGI
Ensembl
PMID:14522971 GO_REF:0000107 MGI:2683817 NCBI chrNW_004936620:2,208,185...2,223,651 JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2135652|PMID:11493536) MGI
Ensembl
PMID:11493536 GO_REF:0000107 MGI:2135652 NCBI chrNW_004936478:3,809,288...3,813,014 JBrowse link
G Hs3st3b1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936724:946,329...987,798 JBrowse link
G Ilk integrin linked kinase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3575981|PMID:15831470) MGI
Ensembl
PMID:15831470 GO_REF:0000107 MGI:3575981 NCBI chrNW_004936842:661,961...667,993 JBrowse link
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2678847|PMID:14568553) MGI
Ensembl
PMID:14568553 GO_REF:0000107 MGI:2678847 NCBI chrNW_004936514:9,928,234...9,973,425 JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:7909549) UniProt
Ensembl
PMID:7909549 GO_REF:0000107 NCBI chrNW_004936490:1,324,378...1,332,177 JBrowse link
G LOC101955952 dentin sialophosphoprotein acts_upstream_of_or_within ISO (MGI:3686561|PMID:16937369) MGI PMID:16937369 MGI:3686561 NCBI chrNW_004936905:458,062...463,359 JBrowse link
G LOC101965661 beta-catenin-interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936623:3,696,686...3,729,017 JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO (MGI:3830398|PMID:19161241) UniProt PMID:19161241 MGI:3830398 NCBI chrNW_004936470:20,480,844...20,485,955 JBrowse link
G Npnt nephronectin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3714574|PMID:17537792) MGI
Ensembl
PMID:17537792 GO_REF:0000107 MGI:3714574 NCBI chrNW_004936814:1,096,604...1,165,755 JBrowse link
G Pax2 paired box 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3768986|PMID:16672320) MGI
Ensembl
PMID:16672320 GO_REF:0000107 MGI:3768986 NCBI chrNW_004936600:4,850,594...4,939,010 JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,523,658...1,553,464 JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2451200|PMID:12591246) MGI
Ensembl
PMID:12591246 GO_REF:0000107 MGI:2451200 NCBI chrNW_004936481:20,200,236...20,440,623 JBrowse link
G Pgf placental growth factor acts_upstream_of_or_within ISO (MGI:2675756|PMID:13678594) MGI PMID:13678594 MGI:2675756 NCBI chrNW_004936488:4,098,187...4,111,108 JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:11891195) UniProt PMID:11891195 NCBI chrNW_004936905:76,781...128,995 JBrowse link
G Pspn persephin acts_upstream_of_or_within ISO (MGI:1196665|PMID:9491986) MGI PMID:9491986 MGI:1196665 NCBI chrNW_004936588:3,734,821...3,735,766 JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4367286|PMID:19809516) MGI
Ensembl
PMID:19809516 GO_REF:0000107 MGI:4367286 NCBI chrNW_004936626:4,241,993...4,301,919 JBrowse link
G Sall1 spalt like transcription factor 1 involved_in
acts_upstream_of
ISO (MGI:2447943|PMID:12482961)
(MGI:5563280|PMID:24550112)
UniProt
MGI
PMID:12482961 PMID:24550112 MGI:2447943 MGI:5563280 NCBI chrNW_004936475:4,106,663...4,121,356 JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3611729|PMID:16396903) MGI
Ensembl
PMID:16396903 GO_REF:0000107 MGI:3611729 NCBI chrNW_004936527:10,033,095...10,042,713 JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2662002|PMID:12783782) MGI
Ensembl
PMID:12783782 GO_REF:0000107 MGI:2662002 NCBI chrNW_004936495:4,839,496...4,842,906 JBrowse link
G Smad4 SMAD family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3583399|PMID:15925496) Ensembl
MGI
PMID:15925496 GO_REF:0000107 MGI:3583399 NCBI chrNW_004936497:12,242,869...12,278,012 JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:8787755) UniProt
Ensembl
PMID:8787755 GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648 JBrowse link
G Spata5 spermatogenesis associated 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936662:1,957,364...2,207,410 JBrowse link
G Tcf21 transcription factor 21 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1347485|PMID:10572052)
(MGI:1202620|PMID:9507058)
MGI
Ensembl
PMID:9507058 PMID:10572052 GO_REF:0000107 MGI:1202620 MGI:1347485 NCBI chrNW_004936560:1,733,903...1,736,895 JBrowse link
G Timeless timeless circadian regulator acts_upstream_of_or_within ISO PMID:10963667 RGD
MGI
PMID:10963667 RGD:2308864 NCBI chrNW_004936646:780,021...792,856 JBrowse link
G Tmem59l transmembrane protein 59 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:2,679,689...2,685,323 JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3588895|PMID:16054034) MGI
Ensembl
PMID:16054034 GO_REF:0000107 MGI:3588895 NCBI chrNW_004936512:6,781,001...6,785,358 JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3588895|PMID:16054034) MGI
Ensembl
PMID:16054034 GO_REF:0000107 MGI:3588895 NCBI chrNW_004936474:7,623,462...7,635,416 JBrowse link
G Wnt6 Wnt family member 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2178881|PMID:11948913) MGI
Ensembl
PMID:11948913 GO_REF:0000107 MGI:2178881 NCBI chrNW_004936569:1,290,061...1,302,672 JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3588895|PMID:16054034) MGI
Ensembl
PMID:16054034 GO_REF:0000107 MGI:3588895 NCBI chrNW_004936541:1,899,039...1,939,561 JBrowse link
G Wt1 WT1 transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936533:5,411,949...5,459,693 JBrowse link
distal tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Klhl3 kelch like family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:4,592,654...4,696,348 JBrowse link
G Wnk4 WNK lysine deficient protein kinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:17,492,718...17,508,571 JBrowse link
mesenchymal to epithelial transition involved in metanephric renal vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smo smoothened, frizzled class receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936579:5,893,064...5,917,021 JBrowse link
mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936697:1,054,237...1,061,468 JBrowse link
G Gdnf glial cell derived neurotrophic factor acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10322633) UniProt
Ensembl
PMID:10322633 GO_REF:0000107 NCBI chrNW_004936518:4,291,391...4,310,752 JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936673:1,394,743...1,399,726 JBrowse link
G Pax2 paired box 2 acts_upstream_of_or_within ISO (PMID:10322633) UniProt PMID:10322633 NCBI chrNW_004936600:4,850,594...4,939,010 JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,523,658...1,553,464 JBrowse link
G Sall1 spalt like transcription factor 1 involved_in
acts_upstream_of
IEA
ISO
(MGI:5563280|PMID:24550112) Ensembl
MGI
PMID:24550112 GO_REF:0000107 MGI:5563280 NCBI chrNW_004936475:4,106,663...4,121,356 JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10322633) UniProt
Ensembl
PMID:10322633 GO_REF:0000107 NCBI chrNW_004936508:7,047,563...7,051,129 JBrowse link
mesonephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4430439|PMID:20040500) MGI
Ensembl
PMID:20040500 GO_REF:0000107 MGI:4430439 NCBI chrNW_004936490:649,551...702,448 JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3588895|PMID:16054034) MGI
Ensembl
PMID:16054034 GO_REF:0000107 MGI:3588895 NCBI chrNW_004936541:1,899,039...1,939,561 JBrowse link
mesonephric duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpc3 glypican 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1931343|PMID:11180950) MGI
Ensembl
PMID:11180950 GO_REF:0000107 MGI:1931343 NCBI chrNW_004936691:1,060,013...1,459,736 JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:11,888,024...11,895,058 JBrowse link
mesonephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004936600:4,850,594...4,939,010 JBrowse link
G Six1 SIX homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:4,839,496...4,842,906 JBrowse link
metanephric distal tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:1,923,383...1,958,160 JBrowse link
metanephric nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (MGI:3704067|PMID:17314325) UniProt PMID:17314325 MGI:3704067 NCBI chrNW_004936600:4,850,594...4,939,010 JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,523,658...1,553,464 JBrowse link
G Sox8 SRY-box transcription factor 8 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4939090|PMID:21212101) MGI
Ensembl
PMID:21212101 GO_REF:0000107 MGI:4939090 NCBI chrNW_004936501:128,386...132,648 JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4939090|PMID:21212101) MGI
Ensembl
PMID:21212101 GO_REF:0000107 MGI:4939090 NCBI chrNW_004936655:1,849,044...1,852,648 JBrowse link
metanephric nephron tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15465493) UniProt
Ensembl
PMID:15465493 GO_REF:0000107 NCBI chrNW_004936711:640,002...642,580 JBrowse link
G Hes5 hes family bHLH transcription factor 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15465493) UniProt
Ensembl
PMID:15465493 GO_REF:0000107 NCBI chrNW_004936737:1,045,496...1,047,865 JBrowse link
G Lgr4 leucine rich repeat containing G protein-coupled receptor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936540:5,752,319...5,846,074 JBrowse link
metanephric renal vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:7909549) UniProt
Ensembl
PMID:7909549 GO_REF:0000107 NCBI chrNW_004936490:1,324,378...1,332,177 JBrowse link
negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936697:1,054,237...1,061,468 JBrowse link
negative regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4949995|PMID:21281623) MGI
Ensembl
PMID:21281623 GO_REF:0000107 MGI:4949995 NCBI chrNW_004936697:1,054,237...1,061,468 JBrowse link
G Tacstd2 tumor associated calcium signal transducer 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:3,206,826...3,208,675 JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883 JBrowse link
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883 JBrowse link
negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in ISO PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chrNW_004936762:1,387,354...1,392,955 JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3714576|PMID:17537789) MGI
Ensembl
PMID:17537789 GO_REF:0000107 MGI:3714576 NCBI chrNW_004936473:29,999,542...30,034,610 JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (MGI:5563280|PMID:24550112) MGI PMID:24550112 MGI:5563280 NCBI chrNW_004936475:4,106,663...4,121,356 JBrowse link
nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3714576|PMID:17537789) MGI
Ensembl
PMID:17537789 GO_REF:0000107 MGI:3714576 NCBI chrNW_004936473:29,999,542...30,034,610 JBrowse link
G Wnt6 Wnt family member 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2178881|PMID:11948913) MGI
Ensembl
PMID:11948913 GO_REF:0000107 MGI:2178881 NCBI chrNW_004936569:1,290,061...1,302,672 JBrowse link
nephron tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt9b Wnt family member 9B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4353952|PMID:19543268) Ensembl
MGI
PMID:19543268 GO_REF:0000107 MGI:4353952 NCBI chrNW_004936541:1,899,039...1,939,561 JBrowse link
positive regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:19,713,299...19,721,144 JBrowse link
G Agtr1 angiotensin II receptor type 1 involved_in ISO PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chrNW_004936519:6,831,096...6,873,977 JBrowse link
G Agtr2 angiotensin II receptor type 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:13,252,678...13,255,570 JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in ISO PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chrNW_004936697:1,054,237...1,061,468 JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:4,291,391...4,310,752 JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3714585|PMID:17522159)
(MGI:4949995|PMID:21281623)
MGI
Ensembl
PMID:17522159 PMID:21281623 GO_REF:0000107 MGI:3714585 MGI:4949995 NCBI chrNW_004936673:1,394,743...1,399,726 JBrowse link
G Hoxb7 homeobox B7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:12,777,005...12,780,515 JBrowse link
G Lgr4 leucine rich repeat containing G protein-coupled receptor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936540:5,752,319...5,846,074 JBrowse link
G Lhx1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:1,324,378...1,332,177 JBrowse link
G Maged1 MAGE family member D1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936909:493,998...592,649 JBrowse link
G Nog noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:6,262,651...6,264,069 JBrowse link
G Pax2 paired box 2 involved_in ISO (MGI:3704067|PMID:17314325), (MGI:3833510|PMID:17881463), (MGI:5009394|PMID:17538188) UniProt PMID:17314325 PMID:17538188 PMID:17881463 MGI:3704067 MGI:3833510 MGI:5009394 NCBI chrNW_004936600:4,850,594...4,939,010 JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,523,658...1,553,464 JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (MGI:5563280|PMID:24550112) MGI PMID:24550112 MGI:5563280 NCBI chrNW_004936475:4,106,663...4,121,356 JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4949995|PMID:21281623) MGI
Ensembl
PMID:21281623 GO_REF:0000107 MGI:4949995 NCBI chrNW_004936495:4,839,496...4,842,906 JBrowse link
G Six4 SIX homeobox 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:4,887,718...4,900,198 JBrowse link
G Smo smoothened, frizzled class receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936579:5,893,064...5,917,021 JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:128,386...132,648 JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648 JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chrNW_004936661:3,742,080...3,758,266 JBrowse link
G Vegfa vascular endothelial growth factor A involved_in ISO (MGI:3611700|PMID:16291795) UniProt PMID:16291795 MGI:3611700 NCBI chrNW_004936476:16,245,134...16,261,180 JBrowse link
G Wnt2b Wnt family member 2B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2150217|PMID:11507767) MGI
Ensembl
PMID:11507767 GO_REF:0000107 MGI:2150217 NCBI chrNW_004936690:1,077,538...1,094,005 JBrowse link
positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdnf glial cell derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:4,291,391...4,310,752 JBrowse link
G Lif LIF interleukin 6 family cytokine involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936904:410,043...413,256 JBrowse link
G Pax2 paired box 2 involved_in ISO (MGI:2445273|PMID:12435636) UniProt PMID:12435636 MGI:2445273 NCBI chrNW_004936600:4,850,594...4,939,010 JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,523,658...1,553,464 JBrowse link
positive regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883 JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:4,291,391...4,310,752 JBrowse link
G Six1 SIX homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:4,839,496...4,842,906 JBrowse link
G Six4 SIX homeobox 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:4,887,718...4,900,198 JBrowse link
primary ureteric bud growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lzts2 leucine zipper tumor suppressor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5297624|PMID:21949185) MGI
Ensembl
PMID:21949185 GO_REF:0000107 MGI:5297624 NCBI chrNW_004936600:4,678,788...4,688,825 JBrowse link
pronephric nephron tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (MGI:5306539|PMID:21959375) UniProt PMID:21959375 MGI:5306539 NCBI chrNW_004936560:2,881,631...3,057,256 JBrowse link
proximal tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Commd5 COMM domain containing 5 involved_in ISO PMID:24515317 UniProt PMID:24515317 RGD:10047245 NCBI chrNW_004936470:7,591,783...7,593,904 JBrowse link
regulation of branch elongation involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4430439|PMID:20040500) MGI
Ensembl
PMID:20040500 GO_REF:0000107 MGI:4430439 NCBI chrNW_004936490:649,551...702,448 JBrowse link
G Six1 SIX homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:4,839,496...4,842,906 JBrowse link
G Six4 SIX homeobox 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:4,887,718...4,900,198 JBrowse link
regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936508:7,047,563...7,051,129 JBrowse link
regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt9b Wnt family member 9B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3588895|PMID:16054034) MGI
Ensembl
PMID:16054034 GO_REF:0000107 MGI:3588895 NCBI chrNW_004936541:1,899,039...1,939,561 JBrowse link
regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdnf glial cell derived neurotrophic factor involved_in ISO PMID:19112489 UniProt PMID:19112489 RGD:8656008 NCBI chrNW_004936518:4,291,391...4,310,752 JBrowse link
renal vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3714576|PMID:17537789) MGI
Ensembl
PMID:17537789 GO_REF:0000107 MGI:3714576 NCBI chrNW_004936473:29,999,542...30,034,610 JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3588895|PMID:16054034) MGI
Ensembl
PMID:16054034 GO_REF:0000107 MGI:3588895 NCBI chrNW_004936474:7,623,462...7,635,416 JBrowse link
renal vesicle induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox8 SRY-box transcription factor 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:128,386...132,648 JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648 JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2150217|PMID:11507767) MGI
Ensembl
PMID:11507767 GO_REF:0000107 MGI:2150217 NCBI chrNW_004936474:7,623,462...7,635,416 JBrowse link
renal vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:1,324,378...1,332,177 JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:11,888,024...11,895,058 JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15821257) UniProt
Ensembl
PMID:15821257 GO_REF:0000107 NCBI chrNW_004936737:1,045,496...1,047,865 JBrowse link
G Irx1 iroquois homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:17875669) UniProt
Ensembl
PMID:17875669 GO_REF:0000107 NCBI chrNW_004936634:3,130,197...3,135,273 JBrowse link
G Irx2 iroquois homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:17875669) UniProt
Ensembl
PMID:17875669 GO_REF:0000107 NCBI chrNW_004936634:3,830,617...3,834,494 JBrowse link
G Irx3 iroquois homeobox 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:17875669) UniProt
Ensembl
PMID:17875669 GO_REF:0000107 NCBI chrNW_004936475:6,810,678...6,813,186 JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:11,888,024...11,895,058 JBrowse link
ureteric bud elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4430439|PMID:20040500) MGI
Ensembl
PMID:20040500 GO_REF:0000107 MGI:4430439 NCBI chrNW_004936490:649,551...702,448 JBrowse link
ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883 JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:4,291,391...4,310,752 JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936673:1,394,743...1,399,726 JBrowse link
G Hs2st1 heparan sulfate 2-O-sulfotransferase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1270048|PMID:9637690) MGI
Ensembl
PMID:9637690 GO_REF:0000107 MGI:1270048 NCBI chrNW_004936732:1,773,043...1,947,081 JBrowse link
G Nog noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:6,262,651...6,264,069 JBrowse link
ureteric bud invasion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmn1 formin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:65439|PMID:7517224) MGI
Ensembl
PMID:7517224 GO_REF:0000107 MGI:65439 NCBI chrNW_004936673:1,424,513...1,838,277 JBrowse link
G Kif26b kinesin family member 26B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4454194|PMID:20439720) MGI
Ensembl
PMID:20439720 GO_REF:0000107 MGI:4454194 NCBI chrNW_004936526:5,250,154...5,434,699 JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within
involved_in
ISO (MGI:3665498|PMID:16839447)
(MGI:2149437|PMID:11688560)
MGI
UniProt
PMID:11688560 PMID:16839447 MGI:2149437 MGI:3665498 NCBI chrNW_004936475:4,106,663...4,121,356 JBrowse link
ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15821257) UniProt
Ensembl
PMID:15821257 GO_REF:0000107 NCBI chrNW_004936711:640,002...642,580 JBrowse link
G Hey1 hes related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO (PMID:15821257) UniProt PMID:15821257 NCBI chrNW_004936871:666,961...670,910 JBrowse link
G Tacstd2 tumor associated calcium signal transducer 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:22194864) UniProt
Ensembl
PMID:22194864 GO_REF:0000107 NCBI chrNW_004936522:3,206,826...3,208,675 JBrowse link
G Wnt11 Wnt family member 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:4,909,041...4,927,482 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14984
    developmental process 6002
      anatomical structure morphogenesis 2647
        nephron morphogenesis 88
          nephron epithelium morphogenesis 85
            nephron tubule morphogenesis + 84
            renal vesicle morphogenesis + 18
Path 2
Term Annotations click to browse term
  biological_process 14984
    developmental process 6002
      anatomical structure development 5620
        multicellular organism development 4621
          system development 3986
            renal system development 374
              kidney development 360
                nephron development 166
                  nephron epithelium development 123
                    nephron epithelium morphogenesis 85
                      nephron tubule morphogenesis + 84
                      renal vesicle morphogenesis + 18
paths to the root