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ONTOLOGY REPORT - ANNOTATIONS

Term:renal vesicle development
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Accession:GO:0072087 term browser browse the term
Definition:The process whose specific outcome is the progression of the renal vesicle over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells.


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renal vesicle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO (PMID:15821257) RGD PMID:15821257 NCBI chr 2:93,096,706...93,100,316
Ensembl chr 2:93,095,498...93,100,312 		JBrowse link
mesenchymal to epithelial transition involved in metanephric renal vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smo smoothened, frizzled class receptor involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(MGI:3611729|PMID:16396903)		 Ensembl
UniProt
RGD		 PMID:16396903 GO_REF:0000024 GO_REF:0000107 MGI:3611729 NCBI chr 4:58,344,101...58,372,828
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:10706139)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:10706139 GO_REF:0000024 GO_REF:0000107 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in
acts_upstream_of_or_within		 IEA
ISO
IDA		 GO_REF:0000107
(PMID:10322633)
PMID:17522159		 Ensembl
RGD		 PMID:10322633 PMID:17522159 GO_REF:0000107, RGD:8656002 NCBI chr 2:56,893,992...56,919,935
Ensembl chr 2:56,895,010...56,917,209 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (MGI:3714585|PMID:17522159) RGD PMID:17522159 MGI:3714585 NCBI chr 3:100,512,317...100,524,001
Ensembl chr 3:100,512,313...100,524,082 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(PMID:10322633)		 UniProt
RGD		 PMID:10322633 GO_REF:0000024 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Pax8 paired box 8 involved_in ISO (PMID:8861958) RGD PMID:8861958 NCBI chr 3:7,185,721...7,242,363
Ensembl chr 3:7,185,723...7,242,363 		JBrowse link
G Sall1 spalt-like transcription factor 1 involved_in ISO (PMID:11511981)
(MGI:2149437|PMID:11688560)		 RGD PMID:11511981 PMID:11688560 MGI:2149437 NCBI chr19:18,005,782...18,022,705
Ensembl chr19:18,007,503...18,022,705 		JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within ISO (PMID:10322633) RGD PMID:10322633 NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193 		JBrowse link
metanephric renal vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:7909549) RGD PMID:7909549 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in IMP PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chr  X:67,350,376...67,355,072
Ensembl chr  X:67,350,373...67,355,162 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:3714576|PMID:17537789)		 Ensembl
RGD		 PMID:17537789 GO_REF:0000107 MGI:3714576 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Sall1 spalt-like transcription factor 1 acts_upstream_of_or_within ISO MGI:3603818 (MGI:5563280|PMID:24550112) RGD PMID:24550112 MGI:5563280 NCBI chr19:18,005,782...18,022,705
Ensembl chr19:18,007,503...18,022,705 		JBrowse link
positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdnf glial cell derived neurotrophic factor involved_in IEA
ISO		 GO_REF:0000107
(MGI:81286|PMID:8657306)		 Ensembl
RGD		 PMID:8657306 GO_REF:0000107 MGI:81286 NCBI chr 2:56,893,992...56,919,935
Ensembl chr 2:56,895,010...56,917,209 		JBrowse link
G Lif LIF, interleukin 6 family cytokine involved_in ISO
IEA		 (PMID:20624457)
GO_REF:0000107		 RGD
Ensembl		 PMID:20624457 GO_REF:0000107 NCBI chr14:79,131,049...79,140,486
Ensembl chr14:79,134,574...79,140,482 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
UniProtKB:Q00288 (MGI:2445273|PMID:12435636)		 UniProt
RGD		 PMID:12435636 GO_REF:0000024 MGI:2445273 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Pax8 paired box 8 involved_in ISS
ISO		 GO_REF:0000024
(MGI:2445273|PMID:12435636)		 UniProt
RGD		 PMID:12435636 GO_REF:0000024 MGI:2445273 NCBI chr 3:7,185,721...7,242,363
Ensembl chr 3:7,185,723...7,242,363 		JBrowse link
regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO MGI:3526437 (MGI:3588895|PMID:16054034) RGD PMID:16054034 MGI:3588895 NCBI chr10:88,635,330...88,657,035
Ensembl chr10:88,635,331...88,657,035 		JBrowse link
renal vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1858008 (MGI:3714576|PMID:17537789)		 Ensembl
RGD		 PMID:17537789 GO_REF:0000107 MGI:3714576 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Wnt4 Wnt family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:3588895|PMID:16054034)		 Ensembl
RGD		 PMID:16054034 GO_REF:0000107 MGI:3588895 NCBI chr 5:149,513,573...149,535,415
Ensembl chr 5:149,514,018...149,532,859 		JBrowse link
renal vesicle induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox8 SRY-box transcription factor 8 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4939090|PMID:21212101)		 UniProt
RGD		 PMID:21212101 GO_REF:0000024 MGI:4939090 NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4939090|PMID:21212101)		 UniProt
RGD		 PMID:21212101 GO_REF:0000024 MGI:4939090 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Wnt4 Wnt family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:2150217|PMID:11507767)		 Ensembl
RGD		 PMID:11507767 GO_REF:0000107 MGI:2150217 NCBI chr 5:149,513,573...149,535,415
Ensembl chr 5:149,514,018...149,532,859 		JBrowse link
renal vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5009392|PMID:17610272)		 UniProt
RGD		 PMID:17610272 GO_REF:0000024 MGI:5009392 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
renal vesicle progenitor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3826342|PMID:18835385)		 UniProt
RGD		 PMID:18835385 GO_REF:0000024 MGI:3826342 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
ureteric bud invasion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmn1 formin 1 acts_upstream_of_or_within ISO (MGI:65439|PMID:7517224) RGD PMID:7517224 MGI:65439 NCBI chr 3:100,101,103...100,485,652
Ensembl chr 3:100,134,549...100,479,220 		JBrowse link
G Kif26b kinesin family member 26B acts_upstream_of_or_within ISO MGI:4459557 (MGI:4454194|PMID:20439720) RGD PMID:20439720 MGI:4454194 NCBI chr13:90,282,821...90,689,058
Ensembl chr13:90,283,404...90,682,811 		JBrowse link
G Sall1 spalt-like transcription factor 1 acts_upstream_of_or_within
involved_in		 ISO MGI:2388379 (MGI:3665498|PMID:16839447)
(MGI:2149437|PMID:11688560)		 RGD PMID:11688560 PMID:16839447 MGI:2149437 MGI:3665498 NCBI chr19:18,005,782...18,022,705
Ensembl chr19:18,007,503...18,022,705 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    developmental process 6965
      anatomical structure development 6376
        nephron development 172
          nephron epithelium development 129
            renal vesicle development 20
              renal vesicle morphogenesis + 18
              renal vesicle progenitor cell differentiation 1
Path 2
Term Annotations click to browse term
  biological_process 19834
    developmental process 6965
      anatomical structure development 6376
        multicellular organism development 5800
          system development 5439
            urogenital system development 445
              renal system development 397
                kidney development 383
                  kidney epithelium development 165
                    nephron epithelium development 129
                      renal vesicle development 20
                        renal vesicle morphogenesis + 18
                        renal vesicle progenitor cell differentiation 1
paths to the root