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ONTOLOGY REPORT - ANNOTATIONS

Term:nephron tubule morphogenesis
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Accession:GO:0072078 term browser browse the term
Definition:The process in which the anatomical structures of a nephron tubule are generated and organized. A nephron tubule is an epithelial tube that is part of the nephron, the functional part of the kidney.

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nephron tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO (PMID:19543268) MGI PMID:19543268 NCBI chrNW_004955478:10,816,405...10,841,416
Ensembl chrNW_004955478:10,816,405...10,841,416 		JBrowse link
branch elongation involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf1 fibroblast growth factor 1 involved_in ISO (PMID:11731227) UniProt PMID:11731227 NCBI chrNW_004955415:11,151,330...11,245,554
Ensembl chrNW_004955415:11,151,266...11,247,344 		JBrowse link
branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts16 ADAM metallopeptidase with thrombospondin type 1 motif 16 acts_upstream_of_or_within ISO (PMID:23661704) MGI PMID:23661704 NCBI chrNW_004955504:3,167,142...3,320,632
Ensembl chrNW_004955504:3,168,985...3,320,949 		JBrowse link
G Agt angiotensinogen NOT|acts_upstream_of_or_within ISO (PMID:8675666)
(PMID:12657564)		 MGI PMID:8675666 PMID:12657564 NCBI chrNW_004955492:7,863,662...7,874,863
Ensembl chrNW_004955492:7,866,833...7,873,357 		JBrowse link
G Bcl2 BCL2 apoptosis regulator acts_upstream_of_or_within ISO (PMID:16672320)
(PMID:14699151)		 MGI PMID:14699151 PMID:16672320 NCBI chrNW_004955402:46,911,125...47,084,214
Ensembl chrNW_004955402:46,916,266...47,084,485 		JBrowse link
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO (PMID:15925496) MGI PMID:15925496 NCBI chrNW_004955415:17,048,374...17,058,172
Ensembl chrNW_004955415:17,048,030...17,060,181 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 ISO (PMID:12631064)
(PMID:17522159)		 UniProt
MGI		 PMID:12631064 PMID:17522159 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Cd44 CD44 molecule (IN blood group) acts_upstream_of_or_within ISO (PMID:10926769) MGI PMID:10926769 NCBI chrNW_004955422:11,106,061...11,189,951 JBrowse link
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in
NOT|involved_in		 ISO PMID:15843474
(MGI:3717986|PMID:17615577)		 UniProt PMID:15843474 PMID:17615577 MGI:3717986 RGD:8554075 NCBI chrNW_004955475:11,722,514...11,725,067 JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 NOT|involved_in ISO (MGI:3717986|PMID:17615577) UniProt PMID:17615577 MGI:3717986 NCBI chrNW_004955436:20,370,950...20,372,677
Ensembl chrNW_004955436:20,370,950...20,372,677 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (PMID:17537789) MGI PMID:17537789 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G Dchs1 dachsous cadherin-related 1 acts_upstream_of_or_within ISO (PMID:21303848) MGI PMID:21303848 NCBI chrNW_004955414:22,331,590...22,365,761
Ensembl chrNW_004955414:22,332,059...22,351,576 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within ISO (PMID:17435047)
(PMID:17172448)
(PMID:16105026)		 MGI PMID:16105026 PMID:17172448 PMID:17435047 NCBI chrNW_004955420:13,068,289...13,273,805
Ensembl chrNW_004955420:13,068,289...13,273,805 		JBrowse link
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO (PMID:16937369) MGI PMID:16937369 NCBI chrNW_004955474:2,254,842...2,259,303 JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO (PMID:12783782) MGI PMID:12783782 NCBI chrNW_004955444:8,336,071...8,655,041
Ensembl chrNW_004955444:8,495,530...8,655,100 		JBrowse link
G Fat4 FAT atypical cadherin 4 acts_upstream_of_or_within ISO (PMID:21303848) MGI PMID:21303848 NCBI chrNW_004955428:15,621,333...15,812,167
Ensembl chrNW_004955428:15,622,498...15,810,896 		JBrowse link
G Fgf2 fibroblast growth factor 2 involved_in ISO (PMID:12631064) UniProt PMID:12631064 NCBI chrNW_004955428:17,840,554...17,894,779
Ensembl chrNW_004955428:17,840,628...17,894,773 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:16049111) MGI PMID:16049111 NCBI chrNW_004955485:8,517,412...8,521,732
Ensembl chrNW_004955485:8,517,412...8,521,770 		JBrowse link
G Foxd1 forkhead box D1 acts_upstream_of_or_within ISO (PMID:13678594) MGI PMID:13678594 NCBI chrNW_004955425:27,158,601...27,159,447 JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in
acts_upstream_of_or_within		 ISO (MGI:81287|PMID:8657307)
(PMID:13678594), (PMID:21281623)		 UniProt
MGI		 PMID:8657307 PMID:13678594 PMID:21281623 MGI:81287 NCBI chrNW_004955426:22,386,613...22,412,324
Ensembl chrNW_004955426:22,386,450...22,412,324 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:16396903) MGI PMID:16396903 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918 		JBrowse link
G Gpc3 glypican 3 acts_upstream_of_or_within ISO (PMID:15925496) MGI PMID:15925496 NCBI chrNW_004955473:969,627...1,431,706
Ensembl chrNW_004955473:969,800...1,431,483 		JBrowse link
G Greb1l GREB1 like retinoic acid receptor coactivator acts_upstream_of_or_within ISO (PMID:29100091) MGI PMID:29100091 NCBI chrNW_004955402:9,865,934...10,204,990
Ensembl chrNW_004955402:10,104,225...10,201,479 		JBrowse link
G Gzf1 GDNF inducible zinc finger protein 1 acts_upstream_of_or_within ISO (PMID:14522971) MGI PMID:14522971 NCBI chrNW_004955415:30,381,153...30,391,239
Ensembl chrNW_004955415:30,384,130...30,391,298 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO (PMID:11493536) MGI PMID:11493536 NCBI chrNW_004955410:28,875,780...28,879,643
Ensembl chrNW_004955410:28,877,055...28,879,465 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO (PMID:11493536) MGI PMID:11493536 NCBI chrNW_004955403:20,541,870...20,556,574 JBrowse link
G Ilk integrin linked kinase acts_upstream_of_or_within ISO (PMID:15831470) MGI PMID:15831470 NCBI chrNW_004955414:22,316,243...22,322,979
Ensembl chrNW_004955414:22,316,047...22,322,979 		JBrowse link
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within ISO (PMID:14568553) MGI PMID:14568553 NCBI chrNW_004955528:1,713,110...1,753,374
Ensembl chrNW_004955528:1,713,125...1,753,116 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO (MGI:5050079|PMID:7909549) UniProt PMID:7909549 MGI:5050079 NCBI chrNW_004955451:1,037,936...1,048,501
Ensembl chrNW_004955451:1,037,825...1,048,501 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO (MGI:3830398|PMID:19161241) UniProt PMID:19161241 MGI:3830398 NCBI chrNW_004955461:2,714,022...2,718,872
Ensembl chrNW_004955461:2,714,022...2,718,982 		JBrowse link
G Npnt nephronectin acts_upstream_of_or_within ISO (PMID:17537792) MGI PMID:17537792 NCBI chrNW_004955496:3,321,310...3,388,625
Ensembl chrNW_004955496:3,320,946...3,388,694 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:1337742)
(PMID:16672320)		 UniProt
MGI		 PMID:1337742 PMID:16672320 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607 		JBrowse link
G Pax8 paired box 8 involved_in ISO (PMID:1337742) UniProt PMID:1337742 NCBI chrNW_004955470:1,016,226...1,072,643
Ensembl chrNW_004955470:1,016,289...1,073,796 		JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO (PMID:12591246) MGI PMID:12591246 NCBI chrNW_004955462:11,777,168...12,083,068
Ensembl chrNW_004955462:11,812,649...12,082,316 		JBrowse link
G Pgf placental growth factor acts_upstream_of_or_within ISO (PMID:13678594) MGI PMID:13678594 NCBI chrNW_004955523:616,196...627,055
Ensembl chrNW_004955523:616,154...627,713 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:11891195) UniProt PMID:11891195 NCBI chrNW_004955474:1,831,221...1,868,170
Ensembl chrNW_004955474:1,833,701...1,868,817 		JBrowse link
G Pspn persephin acts_upstream_of_or_within ISO (PMID:9491986) MGI PMID:9491986 NCBI chrNW_004955495:3,218,720...3,220,941
Ensembl chrNW_004955495:3,220,239...3,220,800 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (PMID:19809516) MGI PMID:19809516 NCBI chrNW_004955422:22,362,330...22,418,062
Ensembl chrNW_004955422:22,362,221...22,427,622 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in
acts_upstream_of		 ISO (MGI:2447943|PMID:12482961)
(PMID:24550112)		 UniProt
MGI		 PMID:12482961 PMID:24550112 MGI:2447943 NCBI chrNW_004955433:9,146,074...9,161,171
Ensembl chrNW_004955433:9,144,748...9,161,171 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:16396903) MGI PMID:16396903 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO (PMID:12783782) MGI PMID:12783782 NCBI chrNW_004955466:8,961,597...8,966,069
Ensembl chrNW_004955466:8,961,597...8,966,069 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO (PMID:15925496) MGI PMID:15925496 NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO (MGI:83252|PMID:8787755) UniProt PMID:8787755 MGI:83252 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
G Tcf21 transcription factor 21 acts_upstream_of_or_within ISO (PMID:9507058)
(PMID:10572052)		 MGI PMID:9507058 PMID:10572052 NCBI chrNW_004955439:2,617,562...2,620,613
Ensembl chrNW_004955439:2,617,492...2,620,644 		JBrowse link
G Timeless timeless circadian regulator acts_upstream_of_or_within ISO PMID:10963667 RGD
MGI		 PMID:10963667 RGD:2308864 NCBI chrNW_004955458:3,999,143...4,029,523
Ensembl chrNW_004955458:3,997,725...4,029,766 		JBrowse link
G Tmem59l transmembrane protein 59 like involved_in ISO (PMID:32017326) MGI PMID:32017326 NCBI chrNW_004955524:2,983,699...2,988,080
Ensembl chrNW_004955524:2,981,909...2,988,080 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO (PMID:16054034) MGI PMID:16054034 NCBI chrNW_004955500:7,797,063...7,811,142
Ensembl chrNW_004955500:7,797,060...7,811,167 		JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within ISO (PMID:16054034) MGI PMID:16054034 NCBI chrNW_004955452:2,319,446...2,344,740
Ensembl chrNW_004955452:2,319,446...2,344,989 		JBrowse link
G Wnt6 Wnt family member 6 acts_upstream_of_or_within ISO (PMID:11948913) MGI PMID:11948913 NCBI chrNW_004955453:14,547,427...14,560,001
Ensembl chrNW_004955453:14,545,700...14,560,976 		JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO (PMID:16054034) MGI PMID:16054034 NCBI chrNW_004955478:10,816,405...10,841,416
Ensembl chrNW_004955478:10,816,405...10,841,416 		JBrowse link
G Wt1 WT1 transcription factor involved_in ISO (PMID:10101119)
(MGI:1333093|PMID:10101119)		 UniProt PMID:10101119 MGI:1333093 NCBI chrNW_004955476:10,464,688...10,504,473
Ensembl chrNW_004955476:10,464,616...10,504,473 		JBrowse link
dichotomous subdivision of terminal units involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxd1 forkhead box D1 involved_in ISO (MGI:3525902|PMID:15634693) UniProt PMID:15634693 MGI:3525902 NCBI chrNW_004955425:27,158,601...27,159,447 JBrowse link
distal tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Klhl3 kelch like family member 3 involved_in ISO (PMID:22406640), (PMID:23453970), (PMID:23576762) UniProt PMID:22406640 PMID:23453970 PMID:23576762 NCBI chrNW_004955408:32,596,497...32,719,967
Ensembl chrNW_004955408:32,596,497...32,721,059 		JBrowse link
G Wnk4 WNK lysine deficient protein kinase 4 involved_in ISO (PMID:23453970), (PMID:23576762) UniProt PMID:23453970 PMID:23576762 NCBI chrNW_004955451:16,593,840...16,606,817
Ensembl chrNW_004955451:16,594,408...16,606,410 		JBrowse link
mesonephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (PMID:20040500) MGI PMID:20040500 NCBI chrNW_004955451:320,283...371,420
Ensembl chrNW_004955451:320,283...371,420 		JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO (PMID:16054034) MGI PMID:16054034 NCBI chrNW_004955478:10,816,405...10,841,416
Ensembl chrNW_004955478:10,816,405...10,841,416 		JBrowse link
mesonephric duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpc3 glypican 3 acts_upstream_of_or_within ISO (PMID:11180950) MGI PMID:11180950 NCBI chrNW_004955473:969,627...1,431,706
Ensembl chrNW_004955473:969,800...1,431,483 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chrNW_004955469:1,954,470...1,961,344
Ensembl chrNW_004955469:1,953,370...1,961,390 		JBrowse link
mesonephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607 		JBrowse link
G Six1 SIX homeobox 1 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004955466:8,961,597...8,966,069
Ensembl chrNW_004955466:8,961,597...8,966,069 		JBrowse link
metanephric distal tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in ISO (PMID:11891195) UniProt PMID:11891195 NCBI chrNW_004955442:15,132,555...15,178,377
Ensembl chrNW_004955442:15,145,640...15,178,377 		JBrowse link
metanephric nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (MGI:3704067|PMID:17314325) UniProt PMID:17314325 MGI:3704067 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607 		JBrowse link
G Pax8 paired box 8 involved_in ISO (MGI:3704067|PMID:17314325) UniProt PMID:17314325 MGI:3704067 NCBI chrNW_004955470:1,016,226...1,072,643
Ensembl chrNW_004955470:1,016,289...1,073,796 		JBrowse link
G Sox8 SRY-box transcription factor 8 acts_upstream_of_or_within ISO (PMID:21212101) MGI PMID:21212101 NCBI chrNW_004955442:16,236,286...16,241,093
Ensembl chrNW_004955442:16,236,232...16,241,152 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:21212101) MGI PMID:21212101 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
metanephric nephron tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 involved_in ISO (MGI:3056024|PMID:15465493) UniProt PMID:15465493 MGI:3056024 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISO (MGI:3056024|PMID:15465493) UniProt PMID:15465493 MGI:3056024 NCBI chrNW_004955486:8,700,212...8,701,581
Ensembl chrNW_004955486:8,700,162...8,701,748 		JBrowse link
G Lgr4 leucine rich repeat containing G protein-coupled receptor 4 involved_in ISO (MGI:5006869|PMID:21523854) UniProt PMID:21523854 MGI:5006869 NCBI chrNW_004955476:6,611,102...6,629,294
Ensembl chrNW_004955476:6,610,103...6,629,264 		JBrowse link
negative regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 ISO (MGI:3525902|PMID:15634693)
(PMID:21281623)
(PMID:12141440)		 UniProt
MGI		 PMID:12141440 PMID:15634693 PMID:21281623 MGI:3525902 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Tacstd2 tumor associated calcium signal transducer 2 involved_in ISO (MGI:5315060|PMID:22194864) UniProt PMID:22194864 MGI:5315060 NCBI chrNW_004955464:1,282,989...1,284,785 JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISO (MGI:3822373|PMID:19112489) UniProt PMID:19112489 MGI:3822373 NCBI chrNW_004955421:24,448,446...24,477,885
Ensembl chrNW_004955421:24,457,496...24,478,744 		JBrowse link
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISO (MGI:3822373|PMID:19112489) UniProt PMID:19112489 MGI:3822373 NCBI chrNW_004955421:24,448,446...24,477,885
Ensembl chrNW_004955421:24,457,496...24,478,744 		JBrowse link
nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (PMID:17537789) MGI PMID:17537789 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G Wnt6 Wnt family member 6 acts_upstream_of_or_within ISO (PMID:11948913) MGI PMID:11948913 NCBI chrNW_004955453:14,547,427...14,560,001
Ensembl chrNW_004955453:14,545,700...14,560,976 		JBrowse link
positive regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in ISO (PMID:18607644) UniProt PMID:18607644 NCBI chrNW_004955492:7,863,662...7,874,863
Ensembl chrNW_004955492:7,866,833...7,873,357 		JBrowse link
G Agtr1 angiotensin II receptor type 1 involved_in ISO PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chrNW_004955474:8,733,942...8,781,305
Ensembl chrNW_004955474:8,733,942...8,781,255 		JBrowse link
G Agtr2 angiotensin II receptor type 2 involved_in ISO PMID:17537984
(MGI:3808848|PMID:18607644)		 UniProt PMID:17537984 PMID:18607644 MGI:3808848 RGD:1643596 NCBI chrNW_004955534:3,653,112...3,654,248
Ensembl chrNW_004955534:3,653,157...3,654,248 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in ISO PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in ISO (PMID:17229286), (PMID:8657307)
(MGI:5284782|PMID:17229286)
PMID:17522159
PMID:17537984		 UniProt PMID:8657307 PMID:17229286 PMID:17522159 PMID:17537984 MGI:5284782 RGD:1643596 RGD:8656002 NCBI chrNW_004955426:22,386,613...22,412,324
Ensembl chrNW_004955426:22,386,450...22,412,324 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in
acts_upstream_of_or_within		 ISO (MGI:3714585|PMID:17522159)
(PMID:17522159)
(PMID:21281623)		 UniProt
MGI		 PMID:17522159 PMID:21281623 MGI:3714585 NCBI chrNW_004955416:1,812,725...1,825,528
Ensembl chrNW_004955416:1,812,676...1,826,271 		JBrowse link
G Hoxb7 homeobox B7 involved_in ISO (MGI:3833510|PMID:17881463) UniProt PMID:17881463 MGI:3833510 NCBI chrNW_004955451:12,630,276...12,634,641
Ensembl chrNW_004955451:12,630,276...12,634,634 		JBrowse link
G Lgr4 leucine rich repeat containing G protein-coupled receptor 4 involved_in ISO (MGI:5006869|PMID:21523854) UniProt PMID:21523854 MGI:5006869 NCBI chrNW_004955476:6,611,102...6,629,294
Ensembl chrNW_004955476:6,610,103...6,629,264 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO (MGI:3613206|PMID:16216236) UniProt PMID:16216236 MGI:3613206 NCBI chrNW_004955451:1,037,936...1,048,501
Ensembl chrNW_004955451:1,037,825...1,048,501 		JBrowse link
G Maged1 MAGE family member D1 involved_in ISO (MGI:3848096|PMID:19268530) UniProt PMID:19268530 MGI:3848096 NCBI chrNW_004955543:2,939,960...3,052,442
Ensembl chrNW_004955543:2,975,259...3,052,504 		JBrowse link
G Nog noggin involved_in ISO (MGI:2446986|PMID:12141440), (MGI:3714585|PMID:17522159) UniProt PMID:12141440 PMID:17522159 MGI:2446986 MGI:3714585 NCBI chrNW_004955451:6,192,368...6,193,766
Ensembl chrNW_004955451:6,193,042...6,193,740 		JBrowse link
G Pax2 paired box 2 involved_in ISO (MGI:3704067|PMID:17314325), (MGI:3833510|PMID:17881463), (MGI:5009394|PMID:17538188) UniProt PMID:17314325 PMID:17538188 PMID:17881463 MGI:3704067 MGI:3833510 MGI:5009394 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607 		JBrowse link
G Pax8 paired box 8 involved_in ISO (MGI:3704067|PMID:17314325) UniProt PMID:17314325 MGI:3704067 NCBI chrNW_004955470:1,016,226...1,072,643
Ensembl chrNW_004955470:1,016,289...1,073,796 		JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (PMID:24550112) MGI PMID:24550112 NCBI chrNW_004955433:9,146,074...9,161,171
Ensembl chrNW_004955433:9,144,748...9,161,171 		JBrowse link
G Six1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:5009396|PMID:17300925)
(PMID:21281623)		 UniProt
MGI		 PMID:17300925 PMID:21281623 MGI:5009396 NCBI chrNW_004955466:8,961,597...8,966,069
Ensembl chrNW_004955466:8,961,597...8,966,069 		JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004955466:8,902,728...8,915,685
Ensembl chrNW_004955466:8,902,517...8,915,723 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in ISO (MGI:3611729|PMID:16396903) UniProt PMID:16396903 MGI:3611729 NCBI chrNW_004955479:9,963,377...9,991,670
Ensembl chrNW_004955479:9,964,170...9,993,165 		JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in ISO (MGI:4939090|PMID:21212101) UniProt PMID:21212101 MGI:4939090 NCBI chrNW_004955442:16,236,286...16,241,093
Ensembl chrNW_004955442:16,236,232...16,241,152 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO (MGI:4939090|PMID:21212101) UniProt PMID:21212101 MGI:4939090 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
G Vegfa vascular endothelial growth factor A involved_in ISO (MGI:3611700|PMID:16291795) UniProt PMID:16291795 MGI:3611700 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
G Wnt2b Wnt family member 2B acts_upstream_of_or_within ISO (PMID:11507767) MGI PMID:11507767 NCBI chrNW_004955435:15,948,262...15,962,958
Ensembl chrNW_004955435:15,948,262...15,962,958 		JBrowse link
positive regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISO (MGI:3822373|PMID:19112489) UniProt PMID:19112489 MGI:3822373 NCBI chrNW_004955421:24,448,446...24,477,885
Ensembl chrNW_004955421:24,457,496...24,478,744 		JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in ISO (PMID:8657307) UniProt PMID:8657307 NCBI chrNW_004955426:22,386,613...22,412,324
Ensembl chrNW_004955426:22,386,450...22,412,324 		JBrowse link
G Six1 SIX homeobox 1 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004955466:8,961,597...8,966,069
Ensembl chrNW_004955466:8,961,597...8,966,069 		JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004955466:8,902,728...8,915,685
Ensembl chrNW_004955466:8,902,517...8,915,723 		JBrowse link
primary ureteric bud growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lzts2 leucine zipper tumor suppressor 2 acts_upstream_of_or_within ISO (PMID:21949185) MGI PMID:21949185 NCBI chrNW_004955485:9,182,984...9,187,144
Ensembl chrNW_004955485:9,181,014...9,191,651 		JBrowse link
proximal tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Commd5 COMM domain containing 5 involved_in ISO PMID:24515317 UniProt PMID:24515317 RGD:10047245 NCBI chrNW_004955454:3,322,253...3,324,313
Ensembl chrNW_004955454:3,322,253...3,324,313 		JBrowse link
G Ctns cystinosin, lysosomal cystine transporter ISO RGD PMID:35695380 RGD:155630629 NCBI chrNW_004955467:13,151,663...13,169,005
Ensembl chrNW_004955467:13,151,957...13,168,696 		JBrowse link
regulation of branch elongation involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (PMID:20040500) MGI PMID:20040500 NCBI chrNW_004955451:320,283...371,420
Ensembl chrNW_004955451:320,283...371,420 		JBrowse link
G Six1 SIX homeobox 1 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004955466:8,961,597...8,966,069
Ensembl chrNW_004955466:8,961,597...8,966,069 		JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004955466:8,902,728...8,915,685
Ensembl chrNW_004955466:8,902,517...8,915,723 		JBrowse link
regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six2 SIX homeobox 2 involved_in ISO (MGI:3691408|PMID:17036046) UniProt PMID:17036046 MGI:3691408 NCBI chrNW_004955441:12,029,530...12,033,214
Ensembl chrNW_004955441:12,029,480...12,033,214 		JBrowse link
regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdnf glial cell derived neurotrophic factor involved_in ISO PMID:19112489 UniProt PMID:19112489 RGD:8656008 NCBI chrNW_004955426:22,386,613...22,412,324
Ensembl chrNW_004955426:22,386,450...22,412,324 		JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chrNW_004955469:1,954,470...1,961,344
Ensembl chrNW_004955469:1,953,370...1,961,390 		JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 involved_in ISO (MGI:3576186|PMID:15821257) UniProt PMID:15821257 MGI:3576186 NCBI chrNW_004955486:8,700,212...8,701,581
Ensembl chrNW_004955486:8,700,162...8,701,748 		JBrowse link
G Irx1 iroquois homeobox 1 involved_in ISO (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chrNW_004955504:2,072,540...2,099,781 JBrowse link
G Irx2 iroquois homeobox 2 involved_in ISO (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chrNW_004955504:1,456,433...1,460,996
Ensembl chrNW_004955504:1,455,664...1,460,996 		JBrowse link
G Irx3 iroquois homeobox 3 involved_in ISO (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chrNW_004955433:11,944,890...11,948,372
Ensembl chrNW_004955433:11,944,890...11,948,369 		JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chrNW_004955469:1,954,470...1,961,344
Ensembl chrNW_004955469:1,953,370...1,961,390 		JBrowse link
ureteric bud elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (PMID:20040500) MGI PMID:20040500 NCBI chrNW_004955451:320,283...371,420
Ensembl chrNW_004955451:320,283...371,420 		JBrowse link
ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISO (MGI:3611949|PMID:16319112) UniProt PMID:16319112 MGI:3611949 NCBI chrNW_004955421:24,448,446...24,477,885
Ensembl chrNW_004955421:24,457,496...24,478,744 		JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in ISO (MGI:81287|PMID:8657307) UniProt PMID:8657307 MGI:81287 NCBI chrNW_004955426:22,386,613...22,412,324
Ensembl chrNW_004955426:22,386,450...22,412,324 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (MGI:3714585|PMID:17522159) UniProt PMID:17522159 MGI:3714585 NCBI chrNW_004955416:1,812,725...1,825,528
Ensembl chrNW_004955416:1,812,676...1,826,271 		JBrowse link
G Hs2st1 heparan sulfate 2-O-sulfotransferase 1 acts_upstream_of_or_within ISO (PMID:9637690) MGI PMID:9637690 NCBI chrNW_004955423:7,090,246...7,253,608
Ensembl chrNW_004955423:7,091,765...7,253,339 		JBrowse link
G Nog noggin involved_in ISO (MGI:3714585|PMID:17522159) UniProt PMID:17522159 MGI:3714585 NCBI chrNW_004955451:6,192,368...6,193,766
Ensembl chrNW_004955451:6,193,042...6,193,740 		JBrowse link
ureteric bud invasion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmn1 formin 1 acts_upstream_of_or_within ISO (PMID:7517224) MGI PMID:7517224 NCBI chrNW_004955416:1,365,797...1,774,025
Ensembl chrNW_004955416:1,365,765...1,774,027 		JBrowse link
G Kif26b kinesin family member 26B acts_upstream_of_or_within ISO (PMID:20439720) MGI PMID:20439720 NCBI chrNW_004955406:8,289,774...8,738,131
Ensembl chrNW_004955406:8,290,046...8,731,226 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:2149437|PMID:11688560)
(PMID:16839447)		 UniProt
MGI		 PMID:11688560 PMID:16839447 MGI:2149437 NCBI chrNW_004955433:9,146,074...9,161,171
Ensembl chrNW_004955433:9,144,748...9,161,171 		JBrowse link
ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 involved_in ISO (MGI:3576186|PMID:15821257) UniProt PMID:15821257 MGI:3576186 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447 		JBrowse link
G Hey1 hes related family bHLH transcription factor with YRPW motif 1 involved_in ISO (MGI:3576186|PMID:15821257) UniProt PMID:15821257 MGI:3576186 NCBI chrNW_004955444:1,498,444...1,502,099
Ensembl chrNW_004955444:1,498,675...1,500,945 		JBrowse link
G Tacstd2 tumor associated calcium signal transducer 2 involved_in ISO (MGI:5315060|PMID:22194864) UniProt PMID:22194864 MGI:5315060 NCBI chrNW_004955464:1,282,989...1,284,785 JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO (PMID:9757009) UniProt PMID:9757009 NCBI chrNW_004955414:15,674,478...15,694,758
Ensembl chrNW_004955414:15,674,940...15,694,883 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12346
    developmental process 5853
      anatomical structure morphogenesis 2558
        nephron morphogenesis 88
          nephron epithelium morphogenesis 85
            nephron tubule morphogenesis 84
              distal tubule morphogenesis + 3
              epithelial cell migration involved in nephron tubule morphogenesis + 0
              mesonephric tubule morphogenesis + 75
              metanephric nephron tubule morphogenesis + 8
              nephron tubule formation + 20
              pronephric nephron tubule morphogenesis + 0
              proximal tubule morphogenesis + 2
Path 2
Term Annotations click to browse term
  biological_process 12346
    developmental process 5853
      anatomical structure development 5540
        multicellular organism development 4550
          system development 3953
            renal system development 380
              kidney development 367
                nephron development 173
                  nephron morphogenesis 88
                    nephron epithelium morphogenesis 85
                      nephron tubule morphogenesis 84
                        distal tubule morphogenesis + 3
                        epithelial cell migration involved in nephron tubule morphogenesis + 0
                        mesonephric tubule morphogenesis + 75
                        metanephric nephron tubule morphogenesis + 8
                        nephron tubule formation + 20
                        pronephric nephron tubule morphogenesis + 0
                        proximal tubule morphogenesis + 2
paths to the root