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ONTOLOGY REPORT - ANNOTATIONS

Term:nephron tubule morphogenesis
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Accession:GO:0072078 term browser browse the term
Definition:The process in which the anatomical structures of a nephron tubule are generated and organized. A nephron tubule is an epithelial tube that is part of the nephron, the functional part of the kidney.

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nephron tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt9b Wnt family member 9B ISO MGI:3526437|MGI:3805020 (MGI:4353952|PMID:19543268) RGD PMID:19543268 MGI:4353952 NCBI chr10:91,785,892...91,808,061
Ensembl chr10:91,785,893...91,807,937 		JBrowse link
branch elongation involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf1 fibroblast growth factor 1 ISO
ISS		 (PMID:11731227)
GO_REF:0000024		 RGD
UniProt		 PMID:11731227 GO_REF:0000024 NCBI chr18:32,273,830...32,359,831
Ensembl chr18:32,273,770...32,359,824 		JBrowse link
branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts16 ADAM metallopeptidase with thrombospondin type 1 motif, 16 ISO (MGI:5504318|PMID:23661704) RGD PMID:23661704 MGI:5504318 NCBI chr 1:35,067,268...35,200,530
Ensembl chr 1:35,067,490...35,198,939 		JBrowse link
G Agt angiotensinogen NOT ISO MGI:2183545 (MGI:77583|PMID:8675666)
(MGI:2655949|PMID:12657564)		 RGD PMID:8675666 PMID:12657564 MGI:2655949 MGI:77583 NCBI chr19:57,321,594...57,333,460
Ensembl chr19:57,321,640...57,333,433 		JBrowse link
G Bcl2 BCL2, apoptosis regulator IEA
ISO		 GO_REF:0000107
MGI:97486 (MGI:3036971|PMID:14699151), (MGI:3768986|PMID:16672320)		 Ensembl
RGD		 PMID:14699151 PMID:16672320 GO_REF:0000107 MGI:3036971 MGI:3768986 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374 		JBrowse link
G Bmp2 bone morphogenetic protein 2 IEA
ISO		 GO_REF:0000107
MGI:104903 (MGI:3583399|PMID:15925496)		 Ensembl
RGD		 PMID:15925496 GO_REF:0000107 MGI:3583399 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318 		JBrowse link
G Bmp4 bone morphogenetic protein 4 IEA
ISO
ISS		 GO_REF:0000107
MGI:1344337 (MGI:3714585|PMID:17522159)
GO_REF:0000024
(PMID:12631064)		 Ensembl
RGD
UniProt		 PMID:12631064 PMID:17522159 GO_REF:0000024 GO_REF:0000107 MGI:3714585 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740 		JBrowse link
G Cd44 CD44 molecule (Indian blood group) ISO (MGI:2449954|PMID:10926769) RGD PMID:10926769 MGI:2449954 NCBI chr 3:92,695,083...92,783,820
Ensembl chr 3:92,696,313...92,783,658 		JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 NOT IMP
ISO		 PMID:15843474
(MGI:3717986|PMID:17615577)		 RGD PMID:17615577, PMID:15843474 MGI:3717986, RGD:8554075 NCBI chr  X:72,128,996...72,133,692
Ensembl chr  X:72,128,994...72,133,692 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 NOT ISO (MGI:3717986|PMID:17615577) RGD PMID:17615577 MGI:3717986 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786 		JBrowse link
G Ctnnb1 catenin beta 1 IEA
ISO		 GO_REF:0000107
MGI:1858008 (MGI:3714576|PMID:17537789)		 Ensembl
RGD		 PMID:17537789 GO_REF:0000107 MGI:3714576 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372 		JBrowse link
G Ctnnbip1 catenin, beta-interacting protein 1 ISO MGI:3045424 (MGI:3757813|PMID:17803964) RGD PMID:17803964 MGI:3757813 NCBI chr 5:166,464,170...166,513,030
Ensembl chr 5:166,464,252...166,513,027 		JBrowse link
G Dchs1 dachsous cadherin-related 1 ISO MGI:4867020 (MGI:4939936|PMID:21303848) RGD PMID:21303848 MGI:4939936 NCBI chr 1:170,594,981...170,629,062
Ensembl chr 1:170,594,822...170,628,915 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 IEA
ISO		 GO_REF:0000107
MGI:2680670|MGI:3699270|MGI:3710242 (MGI:3688770|PMID:16105026), (MGI:3699022|PMID:17172448), (MGI:3709697|PMID:17435047)		 Ensembl
RGD		 PMID:16105026 PMID:17172448 PMID:17435047 GO_REF:0000107 MGI:3688770 MGI:3699022 MGI:3709697 NCBI chr11:72,164,566...72,378,895
Ensembl chr11:72,163,749...72,378,895 		JBrowse link
G Dspp dentin sialophosphoprotein ISO MGI:2653208 (MGI:3686561|PMID:16937369) RGD PMID:16937369 MGI:3686561 NCBI chr14:6,926,972...6,933,079
Ensembl chr14:6,926,976...6,933,070 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:102780 (MGI:2662002|PMID:12783782) RGD PMID:12783782 MGI:2662002 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142 		JBrowse link
G Fat4 FAT atypical cadherin 4 ISO MGI:3846573 (MGI:4939936|PMID:21303848) RGD PMID:21303848 MGI:4939936 NCBI chr 2:125,751,818...125,879,398
Ensembl chr 2:125,752,130...125,879,387 		JBrowse link
G Fgf2 fibroblast growth factor 2 ISO
ISS		 (PMID:12631064)
GO_REF:0000024		 RGD
UniProt		 PMID:12631064 GO_REF:0000024 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681 		JBrowse link
G Fgf8 fibroblast growth factor 8 ISO MGI:2150348 (MGI:3603080|PMID:16049111) RGD PMID:16049111 MGI:3603080 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831 		JBrowse link
G Foxd1 forkhead box D1 ISO (MGI:2675756|PMID:13678594) RGD PMID:13678594 MGI:2675756 NCBI chr 2:28,460,068...28,462,488
Ensembl chr 2:28,460,068...28,462,488 		JBrowse link
G Gdnf glial cell derived neurotrophic factor IEA
ISO
ISS		 GO_REF:0000107
(MGI:2675756|PMID:13678594), (MGI:4949995|PMID:21281623), (MGI:81287|PMID:8657307)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:8657307 PMID:13678594 PMID:21281623 GO_REF:0000024 GO_REF:0000107 MGI:2675756 MGI:4949995 MGI:81287 NCBI chr 2:56,884,181...56,912,964
Ensembl chr 2:56,887,987...56,910,238 		JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:98297 (MGI:3611729|PMID:16396903) RGD PMID:16396903 MGI:3611729 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036 		JBrowse link
G Gpc3 glypican 3 IEA
ISO		 GO_REF:0000107
MGI:88177|MGI:894293 (MGI:3583399|PMID:15925496)		 Ensembl
RGD		 PMID:15925496 GO_REF:0000107 MGI:3583399 NCBI chr  X:139,579,268...139,947,093
Ensembl chr  X:139,579,268...139,916,883 		JBrowse link
G Greb1l GREB1 like retinoic acid receptor coactivator ISO (MGI:6094060|PMID:29100091) RGD PMID:29100091 MGI:6094060 NCBI chr18:1,537,315...1,784,260
Ensembl chr18:1,723,565...1,784,233 		JBrowse link
G Gzf1 GDNF-inducible zinc finger protein 1 ISO (MGI:2683817|PMID:14522971) RGD PMID:14522971 MGI:2683817 NCBI chr 3:143,003,706...143,015,906
Ensembl chr 3:143,003,796...143,015,904 		JBrowse link
G Hoxa11 homeobox A11 ISO MGI:96203 (MGI:2135652|PMID:11493536) RGD PMID:11493536 MGI:2135652 NCBI chr 4:82,296,888...82,301,419
Ensembl chr 4:82,298,152...82,300,503
Ensembl chr 4:82,298,152...82,300,503 		JBrowse link
G Hoxd11 homeobox D11 ISO MGI:96172 (MGI:2135652|PMID:11493536) RGD PMID:11493536 MGI:2135652 NCBI chr 3:61,604,256...61,606,874
Ensembl chr 3:61,604,672...61,606,400 		JBrowse link
G Ilk integrin-linked kinase ISO (MGI:3575981|PMID:15831470) RGD PMID:15831470 MGI:3575981 NCBI chr 1:170,578,941...170,585,192
Ensembl chr 1:170,578,889...170,585,189 		JBrowse link
G Lama5 laminin subunit alpha 5 ISO (MGI:2678847|PMID:14568553) RGD PMID:14568553 MGI:2678847 NCBI chr 3:175,553,042...175,601,112
Ensembl chr 3:175,553,045...175,601,127 		JBrowse link
G Lhx1 LIM homeobox 1 ISO (PMID:7909549) RGD PMID:7909549 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISS
ISO		 GO_REF:0000024
(MGI:3830398|PMID:19161241)		 UniProt
RGD		 PMID:19161241 GO_REF:0000024 MGI:3830398 NCBI chr 7:102,586,313...102,591,240
Ensembl chr 7:102,586,313...102,591,240 		JBrowse link
G Npnt nephronectin ISO MGI:3715213 (MGI:3714574|PMID:17537792) RGD PMID:17537792 MGI:3714574 NCBI chr 2:238,001,767...238,068,886
Ensembl chr 2:238,002,990...238,068,694 		JBrowse link
G Pax2 paired box 2 ISO
ISS		 (PMID:1337742)
MGI:1857114|MGI:88138 (MGI:3768986|PMID:16672320)
GO_REF:0000024		 RGD
UniProt		 PMID:1337742 PMID:16672320 GO_REF:0000024 MGI:3768986 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329 		JBrowse link
G Pax8 paired box 8 ISO (PMID:1337742) RGD PMID:1337742 NCBI chr 3:1,527,316...1,586,019
Ensembl chr 3:1,527,279...1,584,946 		JBrowse link
G Pbx1 PBX homeobox 1 ISO (MGI:2451200|PMID:12591246) RGD PMID:12591246 MGI:2451200 NCBI chr13:86,390,741...86,671,460
Ensembl chr13:86,390,741...86,451,002 		JBrowse link
G Pgf placental growth factor ISO (MGI:2675756|PMID:13678594) RGD PMID:13678594 MGI:2675756 NCBI chr 6:108,994,016...109,004,598
Ensembl chr 6:108,994,018...109,004,598 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel ISO (PMID:11891195) RGD PMID:11891195 NCBI chr14:6,602,004...6,645,257
Ensembl chr14:6,602,004...6,645,257 		JBrowse link
G Pspn persephin ISO (MGI:1196665|PMID:9491986) RGD PMID:9491986 MGI:1196665 NCBI chr 9:10,044,756...10,045,314
Ensembl chr 9:10,044,756...10,045,314 		JBrowse link
G Ptch1 patched 1 ISO MGI:1857447 (MGI:4367286|PMID:19809516) RGD PMID:19809516 MGI:4367286 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873 		JBrowse link
G Sall1 spalt-like transcription factor 1 ISO (MGI:2447943|PMID:12482961) RGD PMID:12482961 MGI:2447943 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039 		JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
ISS		 GO_REF:0000107
MGI:1857796 (MGI:3611729|PMID:16396903)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:16396903 GO_REF:0000024 GO_REF:0000107 MGI:3611729 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691 		JBrowse link
G Six1 SIX homeobox 1 ISO MGI:109344 (MGI:2662002|PMID:12783782) RGD PMID:12783782 MGI:2662002 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296 		JBrowse link
G Smad4 SMAD family member 4 IEA
ISO		 GO_REF:0000107
MGI:104903|MGI:88177 (MGI:3583399|PMID:15925496)		 Ensembl
RGD		 PMID:15925496 GO_REF:0000107 MGI:3583399 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199 		JBrowse link
G Sox9 SRY-box transcription factor 9 ISO (PMID:8787755) RGD PMID:8787755 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379 		JBrowse link
G Tcf21 transcription factor 21 ISS
ISO		 GO_REF:0000024
MGI:2148207 (MGI:1202620|PMID:9507058), (MGI:1347485|PMID:10572052)		 UniProt
RGD		 PMID:9507058 PMID:10572052 GO_REF:0000024 MGI:1202620 MGI:1347485 NCBI chr 1:23,906,717...23,909,576
Ensembl chr 1:23,906,717...23,909,566 		JBrowse link
G Timeless timeless circadian regulator IMP RGD PMID:10963667 RGD:2308864 NCBI chr 7:2,643,288...2,667,329
Ensembl chr 7:2,643,288...2,667,628 		JBrowse link
G Wnt1 Wnt family member 1 ISO MGI:1197020 (MGI:3588895|PMID:16054034) RGD PMID:16054034 MGI:3588895 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046 		JBrowse link
G Wnt4 Wnt family member 4 IEA
ISO		 GO_REF:0000107
(MGI:3588895|PMID:16054034)		 Ensembl
RGD		 PMID:16054034 GO_REF:0000107 MGI:3588895 NCBI chr 5:155,649,238...155,668,065
Ensembl chr 5:155,649,217...155,672,579 		JBrowse link
G Wnt6 Wnt family member 6 ISO UniProtKB:P22724 (MGI:2178881|PMID:11948913) RGD PMID:11948913 MGI:2178881 NCBI chr 9:82,033,543...82,047,172
Ensembl chr 9:82,033,543...82,047,166 		JBrowse link
G Wnt9b Wnt family member 9B ISO MGI:3526437|MGI:98953 (MGI:3588895|PMID:16054034) RGD PMID:16054034 MGI:3588895 NCBI chr10:91,785,892...91,808,061
Ensembl chr10:91,785,893...91,807,937 		JBrowse link
G Wt1 WT1 transcription factor ISO
ISS		 UniProtKB:P22561 (PMID:10101119)
(MGI:1333093|PMID:10101119)
GO_REF:0000024		 RGD
UniProt		 PMID:10101119 GO_REF:0000024 MGI:1333093 NCBI chr 3:95,133,221...95,180,574
Ensembl chr 3:95,133,713...95,180,564 		JBrowse link
dichotomous subdivision of terminal units involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxd1 forkhead box D1 IEA
ISO
ISS		 GO_REF:0000107
(MGI:3525902|PMID:15634693)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:15634693 GO_REF:0000024 GO_REF:0000107 MGI:3525902 NCBI chr 2:28,460,068...28,462,488
Ensembl chr 2:28,460,068...28,462,488 		JBrowse link
distal tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Klhl3 kelch-like family member 3 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:22406640), (PMID:23453970), (PMID:23576762)		 UniProt
Ensembl
RGD		 PMID:22406640 PMID:23453970 PMID:23576762 GO_REF:0000024 GO_REF:0000107 NCBI chr17:6,924,423...7,029,374
Ensembl chr17:6,935,860...7,029,240 		JBrowse link
G Wnk4 WNK lysine deficient protein kinase 4 ISS
ISO		 GO_REF:0000024
(PMID:23453970), (PMID:23576762)		 UniProt
RGD		 PMID:23453970 PMID:23576762 GO_REF:0000024 NCBI chr10:89,181,139...89,198,213
Ensembl chr10:89,181,165...89,198,213 		JBrowse link
mesonephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B ISO MGI:1857856 (MGI:4430439|PMID:20040500) RGD PMID:20040500 MGI:4430439 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902 		JBrowse link
G Wnt9b Wnt family member 9B ISO MGI:3526437 (MGI:3588895|PMID:16054034) RGD PMID:16054034 MGI:3588895 NCBI chr10:91,785,892...91,808,061
Ensembl chr10:91,785,893...91,807,937 		JBrowse link
mesonephric duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpc3 glypican 3 IEA
ISO
ISS		 GO_REF:0000107
MGI:2159356 (MGI:1931343|PMID:11180950)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:11180950 GO_REF:0000024 GO_REF:0000107 MGI:1931343 NCBI chr  X:139,579,268...139,947,093
Ensembl chr  X:139,579,268...139,916,883 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISS
ISO		 GO_REF:0000024
(MGI:3697513|PMID:16790474)		 UniProt
RGD		 PMID:16790474 GO_REF:0000024 MGI:3697513 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667 		JBrowse link
mesonephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 ISO (MGI:5009396|PMID:17300925) RGD PMID:17300925 MGI:5009396 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329 		JBrowse link
G Six1 SIX homeobox 1 ISO (MGI:5009396|PMID:17300925) RGD PMID:17300925 MGI:5009396 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296 		JBrowse link
metanephric distal tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pkd1 polycystin 1, transient receptor potential channel interacting ISO (PMID:11891195) RGD PMID:11891195 NCBI chr10:13,914,057...13,962,008
Ensembl chr10:13,915,214...13,962,008 		JBrowse link
metanephric nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 ISS
ISO		 GO_REF:0000024
(MGI:3704067|PMID:17314325)		 UniProt
RGD		 PMID:17314325 GO_REF:0000024 MGI:3704067 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329 		JBrowse link
G Pax8 paired box 8 ISS
ISO		 GO_REF:0000024
(MGI:3704067|PMID:17314325)		 UniProt
RGD		 PMID:17314325 GO_REF:0000024 MGI:3704067 NCBI chr 3:1,527,316...1,586,019
Ensembl chr 3:1,527,279...1,584,946 		JBrowse link
G Sox8 SRY-box transcription factor 8 ISS
ISO		 GO_REF:0000024
MGI:98371 (MGI:4939090|PMID:21212101)		 UniProt
RGD		 PMID:21212101 GO_REF:0000024 MGI:4939090 NCBI chr10:14,932,348...14,937,336
Ensembl chr10:14,932,348...14,937,336 		JBrowse link
G Sox9 SRY-box transcription factor 9 ISS
ISO		 GO_REF:0000024
MGI:98370 (MGI:4939090|PMID:21212101)		 UniProt
RGD		 PMID:21212101 GO_REF:0000024 MGI:4939090 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379 		JBrowse link
metanephric nephron tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 IEA
ISO		 GO_REF:0000107
(PMID:15465493)		 Ensembl
RGD		 PMID:15465493 GO_REF:0000107 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 ISO (PMID:15465493) RGD PMID:15465493 NCBI chr 5:172,364,421...172,365,188
Ensembl chr 5:172,364,421...172,365,188 		JBrowse link
G Lgr4 leucine-rich repeat-containing G protein-coupled receptor 4 ISO (MGI:5006869|PMID:21523854) RGD PMID:21523854 MGI:5006869 NCBI chr 3:101,051,960...101,152,119
Ensembl chr 3:101,051,955...101,152,119 		JBrowse link
negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 IEA
ISO
ISS		 GO_REF:0000107
(PMID:10706139), (PMID:17118062)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:10706139 PMID:17118062 GO_REF:0000024 GO_REF:0000107 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740 		JBrowse link
negative regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:102780 (MGI:3525902|PMID:15634693), (MGI:4949995|PMID:21281623)
(PMID:12141440), (PMID:17118062)		 UniProt
Ensembl
RGD		 PMID:12141440 PMID:15634693 PMID:17118062 PMID:21281623 GO_REF:0000024 GO_REF:0000107 MGI:3525902 MGI:4949995 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740 		JBrowse link
G Tacstd2 tumor-associated calcium signal transducer 2 IEA
ISO
ISS		 GO_REF:0000107
(MGI:5315060|PMID:22194864)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:22194864 GO_REF:0000024 GO_REF:0000107 MGI:5315060 NCBI chr 4:98,341,187...98,342,887
Ensembl chr 4:98,341,188...98,342,887 		JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 ISS
ISO		 GO_REF:0000024
(MGI:3822373|PMID:19112489)		 UniProt
RGD		 PMID:19112489 GO_REF:0000024 MGI:3822373 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681 		JBrowse link
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 ISS
ISO		 GO_REF:0000024
(MGI:3822373|PMID:19112489)		 UniProt
RGD		 PMID:19112489 GO_REF:0000024 MGI:3822373 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681 		JBrowse link
nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 IEA
ISO		 GO_REF:0000107
MGI:1858008 (MGI:3714576|PMID:17537789)		 Ensembl
RGD		 PMID:17537789 GO_REF:0000107 MGI:3714576 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372 		JBrowse link
G Wnt6 Wnt family member 6 ISO (MGI:2178881|PMID:11948913) RGD PMID:11948913 MGI:2178881 NCBI chr 9:82,033,543...82,047,172
Ensembl chr 9:82,033,543...82,047,166 		JBrowse link
positive regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO (PMID:18607644) RGD PMID:18607644 NCBI chr19:57,321,594...57,333,460
Ensembl chr19:57,321,640...57,333,433 		JBrowse link
G Agtr1a angiotensin II receptor, type 1a IMP PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chr17:35,907,102...35,958,136
Ensembl chr17:35,907,108...35,958,077 		JBrowse link
G Agtr1b angiotensin II receptor, type 1b IMP PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chr 2:105,149,020...105,224,335
Ensembl chr 2:105,149,020...105,224,295 		JBrowse link
G Agtr2 angiotensin II receptor, type 2 IMP
ISO		 PMID:17537984
(MGI:3808848|PMID:18607644)		 RGD PMID:18607644, PMID:17537984 MGI:3808848, RGD:1643596 NCBI chr  X:119,389,480...119,393,845
Ensembl chr  X:119,390,013...119,393,842 		JBrowse link
G Bmp4 bone morphogenetic protein 4 IMP PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740 		JBrowse link
G Gdnf glial cell derived neurotrophic factor IMP
IBA
ISO
IEA
IDA		 PMID:17537984
PMID:21873635
(MGI:5284782|PMID:17229286)
(PMID:17229286), (PMID:8657307)
GO_REF:0000107
PMID:17522159		 RGD
Ensembl		 PMID:8657307 PMID:17229286, PMID:17537984, PMID:21873635, PMID:17522159 GO_REF:0000107 MGI:5284782, RGD:1643596, RGD:13792537, RGD:8656002 NCBI chr 2:56,884,181...56,912,964
Ensembl chr 2:56,887,987...56,910,238 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist ISO MGI:88180 (MGI:3714585|PMID:17522159), (MGI:4949995|PMID:21281623) RGD PMID:17522159 PMID:21281623 MGI:3714585 MGI:4949995 NCBI chr 3:105,203,309...105,214,989
Ensembl chr 3:105,203,309...105,214,989 		JBrowse link
G Hoxb7 homeo box B7 ISO (MGI:3833510|PMID:17881463) RGD PMID:17881463 MGI:3833510 NCBI chr10:84,135,224...84,138,642
Ensembl chr10:84,135,116...84,138,637 		JBrowse link
G Lgr4 leucine-rich repeat-containing G protein-coupled receptor 4 ISO (MGI:5006869|PMID:21523854) RGD PMID:21523854 MGI:5006869 NCBI chr 3:101,051,960...101,152,119
Ensembl chr 3:101,051,955...101,152,119 		JBrowse link
G Lhx1 LIM homeobox 1 ISS
ISO		 GO_REF:0000024
(MGI:3613206|PMID:16216236)		 UniProt
RGD		 PMID:16216236 GO_REF:0000024 MGI:3613206 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293 		JBrowse link
G Maged1 MAGE family member D1 ISO (MGI:3848096|PMID:19268530) RGD PMID:19268530 MGI:3848096 NCBI chr  X:63,803,194...63,809,715
Ensembl chr  X:63,803,189...63,809,861 		JBrowse link
G Nog noggin IEA
ISO
ISS		 GO_REF:0000107
(MGI:2446986|PMID:12141440), (MGI:3714585|PMID:17522159)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:12141440 PMID:17522159 GO_REF:0000024 GO_REF:0000107 MGI:2446986 MGI:3714585 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386 		JBrowse link
G Pax2 paired box 2 ISS
ISO		 GO_REF:0000024
(MGI:3704067|PMID:17314325), (MGI:3833510|PMID:17881463), (MGI:5009394|PMID:17538188)		 UniProt
RGD		 PMID:17314325 PMID:17538188 PMID:17881463 GO_REF:0000024 MGI:3704067 MGI:3833510 MGI:5009394 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329 		JBrowse link
G Pax8 paired box 8 ISS
ISO		 GO_REF:0000024
(MGI:3704067|PMID:17314325)		 UniProt
RGD		 PMID:17314325 GO_REF:0000024 MGI:3704067 NCBI chr 3:1,527,316...1,586,019
Ensembl chr 3:1,527,279...1,584,946 		JBrowse link
G Sall1 spalt-like transcription factor 1 ISO MGI:3603818 (MGI:5563280|PMID:24550112) RGD PMID:24550112 MGI:5563280 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039 		JBrowse link
G Six1 SIX homeobox 1 ISO MGI:88180 (MGI:4949995|PMID:21281623), (MGI:5009396|PMID:17300925) RGD PMID:17300925 PMID:21281623 MGI:4949995 MGI:5009396 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296 		JBrowse link
G Six4 SIX homeobox 4 ISO (MGI:5009396|PMID:17300925) RGD PMID:17300925 MGI:5009396 NCBI chr 6:95,984,868...95,999,709
Ensembl chr 6:95,984,868...95,998,529 		JBrowse link
G Smo smoothened, frizzled class receptor IEA
ISO
ISS		 GO_REF:0000107
(MGI:3611729|PMID:16396903)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:16396903 GO_REF:0000024 GO_REF:0000107 MGI:3611729 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770 		JBrowse link
G Sox8 SRY-box transcription factor 8 ISS
ISO		 GO_REF:0000024
(MGI:4939090|PMID:21212101)		 UniProt
RGD		 PMID:21212101 GO_REF:0000024 MGI:4939090 NCBI chr10:14,932,348...14,937,336
Ensembl chr10:14,932,348...14,937,336 		JBrowse link
G Sox9 SRY-box transcription factor 9 ISS
ISO		 GO_REF:0000024
(MGI:4939090|PMID:21212101)		 UniProt
RGD		 PMID:21212101 GO_REF:0000024 MGI:4939090 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 IMP PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199 		JBrowse link
G Vegfa vascular endothelial growth factor A ISO (MGI:3611700|PMID:16291795) RGD PMID:16291795 MGI:3611700 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681 		JBrowse link
G Wnt2b Wnt family member 2B ISO (MGI:2150217|PMID:11507767) RGD PMID:11507767 MGI:2150217 NCBI chr 2:207,433,771...207,457,094
Ensembl chr 2:207,440,886...207,455,258 		JBrowse link
positive regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 ISS
ISO		 GO_REF:0000024
(MGI:3822373|PMID:19112489)		 UniProt
RGD		 PMID:19112489 GO_REF:0000024 MGI:3822373 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681 		JBrowse link
G Gdnf glial cell derived neurotrophic factor IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:8657307)		 Ensembl
UniProt
RGD		 PMID:8657307 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:56,884,181...56,912,964
Ensembl chr 2:56,887,987...56,910,238 		JBrowse link
G Six1 SIX homeobox 1 ISO (MGI:5009396|PMID:17300925) RGD PMID:17300925 MGI:5009396 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296 		JBrowse link
G Six4 SIX homeobox 4 ISO (MGI:5009396|PMID:17300925) RGD PMID:17300925 MGI:5009396 NCBI chr 6:95,984,868...95,999,709
Ensembl chr 6:95,984,868...95,998,529 		JBrowse link
primary ureteric bud growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lzts2 leucine zipper tumor suppressor 2 IEA
ISO		 GO_REF:0000107
MGI:5302222 (MGI:5297624|PMID:21949185)		 Ensembl
RGD		 PMID:21949185 GO_REF:0000107 MGI:5297624 NCBI chr 1:264,765,256...264,776,553
Ensembl chr 1:264,768,105...264,776,616 		JBrowse link
pronephric nephron tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISS
ISO		 GO_REF:0000024
UniProtKB:F8W3V6 (MGI:5306539|PMID:21959375)		 UniProt
RGD		 PMID:21959375 GO_REF:0000024 MGI:5306539 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769 		JBrowse link
proximal tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Commd5 COMM domain containing 5 IDA PMID:24515317 UniProt PMID:24515317 RGD:10047245 NCBI chr 7:117,963,213...117,965,010
Ensembl chr 7:118,502,676...118,504,097
Ensembl chr 7:118,502,676...118,504,097 		JBrowse link
regulation of branch elongation involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B ISO MGI:1857856 (MGI:4430439|PMID:20040500) RGD PMID:20040500 MGI:4430439 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902 		JBrowse link
G Six1 SIX homeobox 1 ISO (MGI:5009396|PMID:17300925) RGD PMID:17300925 MGI:5009396 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296 		JBrowse link
G Six4 SIX homeobox 4 ISO (MGI:5009396|PMID:17300925) RGD PMID:17300925 MGI:5009396 NCBI chr 6:95,984,868...95,999,709
Ensembl chr 6:95,984,868...95,998,529 		JBrowse link
regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six2 SIX homeobox 2 ISO (MGI:3691408|PMID:17036046) RGD PMID:17036046 MGI:3691408 NCBI chr 6:8,952,572...8,955,893
Ensembl chr 6:8,952,572...8,956,276 		JBrowse link
regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdnf glial cell derived neurotrophic factor IDA PMID:19112489 UniProt PMID:19112489 RGD:8656008 NCBI chr 2:56,884,181...56,912,964
Ensembl chr 2:56,887,987...56,910,238 		JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 ISS
ISO		 GO_REF:0000024
(MGI:3697513|PMID:16790474)		 UniProt
RGD		 PMID:16790474 GO_REF:0000024 MGI:3697513 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667 		JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 ISO (PMID:15821257) RGD PMID:15821257 NCBI chr 5:172,364,421...172,365,188
Ensembl chr 5:172,364,421...172,365,188 		JBrowse link
G Irx1 iroquois homeobox 1 ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:33,910,912...33,916,741
Ensembl chr 1:33,910,912...33,916,741 		JBrowse link
G Irx2 iroquois homeobox 2 ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:33,270,388...33,275,868
Ensembl chr 1:33,271,977...33,275,540 		JBrowse link
G Irx3 iroquois homeobox 3 ISO (PMID:17875669) RGD PMID:17875669 NCBI chr19:15,838,714...15,842,135
Ensembl chr19:15,838,714...15,840,990 		JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 ISS
ISO		 GO_REF:0000024
(MGI:3697513|PMID:16790474)		 UniProt
RGD		 PMID:16790474 GO_REF:0000024 MGI:3697513 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667 		JBrowse link
ureteric bud elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B ISO MGI:1857856 (MGI:4430439|PMID:20040500) RGD PMID:20040500 MGI:4430439 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902 		JBrowse link
ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 ISS
ISO		 GO_REF:0000024
(MGI:3611949|PMID:16319112)		 UniProt
RGD		 PMID:16319112 GO_REF:0000024 MGI:3611949 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681 		JBrowse link
G Gdnf glial cell derived neurotrophic factor IEA
ISO		 GO_REF:0000107
(MGI:81287|PMID:8657307)		 Ensembl
RGD		 PMID:8657307 GO_REF:0000107 MGI:81287 NCBI chr 2:56,884,181...56,912,964
Ensembl chr 2:56,887,987...56,910,238 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist ISO (MGI:3714585|PMID:17522159) RGD PMID:17522159 MGI:3714585 NCBI chr 3:105,203,309...105,214,989
Ensembl chr 3:105,203,309...105,214,989 		JBrowse link
G Hs2st1 heparan sulfate 2-O-sulfotransferase 1 ISO MGI:1934916 (MGI:1270048|PMID:9637690) RGD PMID:9637690 MGI:1270048 NCBI chr 2:250,467,428...250,600,517
Ensembl chr 2:250,467,429...250,600,517 		JBrowse link
G Nog noggin IEA
ISO		 GO_REF:0000107
(MGI:3714585|PMID:17522159)		 Ensembl
RGD		 PMID:17522159 GO_REF:0000107 MGI:3714585 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386 		JBrowse link
ureteric bud invasion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmn1 formin 1 ISO (MGI:65439|PMID:7517224) RGD PMID:7517224 MGI:65439 NCBI chr 3:104,783,093...105,170,761
Ensembl chr 3:104,816,987...105,086,436 		JBrowse link
G Kif26b kinesin family member 26B ISO MGI:4459557 (MGI:4454194|PMID:20439720) RGD PMID:20439720 MGI:4454194 NCBI chr13:96,775,356...97,173,469
Ensembl chr13:96,775,357...97,173,469 		JBrowse link
G Sall1 spalt-like transcription factor 1 ISO MGI:2388379 (MGI:2149437|PMID:11688560), (MGI:3665498|PMID:16839447) RGD PMID:11688560 PMID:16839447 MGI:2149437 MGI:3665498 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039 		JBrowse link
ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 IEA
ISO		 GO_REF:0000107
(PMID:15821257)		 Ensembl
RGD		 PMID:15821257 GO_REF:0000107 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248 		JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 ISO (PMID:15821257) RGD PMID:15821257 NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696 		JBrowse link
G Tacstd2 tumor-associated calcium signal transducer 2 IEA
ISO		 GO_REF:0000107
(PMID:22194864)		 Ensembl
RGD		 PMID:22194864 GO_REF:0000107 NCBI chr 4:98,341,187...98,342,887
Ensembl chr 4:98,341,188...98,342,887 		JBrowse link
G Wnt11 Wnt family member 11 ISO (PMID:9757009) RGD PMID:9757009 NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20045
    developmental process 6824
      anatomical structure morphogenesis 2887
        nephron morphogenesis 89
          nephron epithelium morphogenesis 86
            nephron tubule morphogenesis 85
              distal tubule morphogenesis + 3
              epithelial cell migration involved in nephron tubule morphogenesis + 0
              mesonephric tubule morphogenesis + 76
              metanephric nephron tubule morphogenesis + 8
              nephron tubule formation + 20
              pronephric nephron tubule morphogenesis + 1
              proximal tubule morphogenesis + 1
Path 2
Term Annotations click to browse term
  biological_process 20045
    developmental process 6824
      anatomical structure development 6290
        multicellular organism development 5766
          system development 5298
            urogenital system development 434
              renal system development 384
                kidney development 370
                  nephron development 166
                    nephron epithelium development 124
                      nephron tubule development 105
                        nephron tubule morphogenesis 85
                          distal tubule morphogenesis + 3
                          epithelial cell migration involved in nephron tubule morphogenesis + 0
                          mesonephric tubule morphogenesis + 76
                          metanephric nephron tubule morphogenesis + 8
                          nephron tubule formation + 20
                          pronephric nephron tubule morphogenesis + 1
                          proximal tubule morphogenesis + 1
paths to the root