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ONTOLOGY REPORT - ANNOTATIONS


Term:kidney mesenchyme development
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Accession:GO:0072074 term browser browse the term
Definition:The biological process whose specific outcome is the progression of a kidney mesenchyme from an initial condition to its mature state. This process begins with the formation of kidney mesenchyme and ends with the mature structure. Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney.



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mesenchymal cell differentiation involved in kidney development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amer1 APC membrane recruitment protein 1 acts_upstream_of_or_within ISO MGI:2446599|MGI:5086003 (MGI:5013668|PMID:21571217) RGD PMID:21571217 MGI:5013668 NCBI chr  X:60,300,595...60,316,480
Ensembl chr  X:60,295,751...60,316,440
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO
GO_REF:0000107
(MGI:3710018|PMID:17442697)
Ensembl
RGD
PMID:17442697 GO_REF:0000107 MGI:3710018 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Six2 SIX homeobox 2 involved_in ISO (MGI:3691408|PMID:17036046) RGD PMID:17036046 MGI:3691408 NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193
JBrowse link
metanephric cap mesenchymal cell proliferation involved in metanephros development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3826342|PMID:18835385)
UniProt
RGD
PMID:18835385 GO_REF:0000024 MGI:3826342 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817
JBrowse link
metanephric mesenchymal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3697513|PMID:16790474)
UniProt
RGD
PMID:16790474 GO_REF:0000024 MGI:3697513 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817
JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:3663200|PMID:16368682)
UniProt
RGD
PMID:16368682 GO_REF:0000024 MGI:3663200 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Tcf21 transcription factor 21 involved_in ISS
ISO
GO_REF:0000024
(MGI:2651771|PMID:12619136)
UniProt
RGD
PMID:12619136 GO_REF:0000024 MGI:2651771 NCBI chr 1:22,701,353...22,704,212
Ensembl chr 1:22,701,353...22,704,202
JBrowse link
metanephric mesenchymal cell proliferation involved in metanephros development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 involved_in ISO UniProtKB:P97471 (MGI:3623046|PMID:15342483) RGD PMID:15342483 MGI:3623046 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:2388350|PMID:12399320)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:12399320 GO_REF:0000024 GO_REF:0000107 MGI:2388350 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
metanephric mesenchyme development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5009359|PMID:20171952)
UniProt
RGD
PMID:20171952 GO_REF:0000024 MGI:5009359 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817
JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:5009359|PMID:20171952)
UniProt
RGD
PMID:20171952 GO_REF:0000024 MGI:5009359 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Pdgfrb platelet derived growth factor receptor beta involved_in IEP PMID:10734101 UniProt PMID:10734101 RGD:8554631 NCBI chr18:54,500,002...54,538,843
Ensembl chr18:54,499,964...54,538,843
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:11891195) RGD PMID:11891195 NCBI chr14:5,237,135...5,280,455
Ensembl chr14:5,237,135...5,280,825
JBrowse link
G Six1 SIX homeobox 1 involved_in ISO (MGI:5009396|PMID:17300925) RGD PMID:17300925 MGI:5009396 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975
JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (MGI:5009396|PMID:17300925) RGD PMID:17300925 MGI:5009396 NCBI chr 6:91,802,328...91,816,062
Ensembl chr 6:91,802,329...91,815,992
JBrowse link
G Wt1 WT1 transcription factor involved_in ISS
ISO
GO_REF:0000024
(MGI:62488|PMID:8395349)
UniProt
RGD
PMID:8395349 GO_REF:0000024 MGI:62488 NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643
JBrowse link
metanephric mesenchyme morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 involved_in ISO UniProtKB:P97471 (MGI:3623046|PMID:15342483) RGD PMID:15342483 MGI:3623046 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3697513|PMID:16790474)
UniProt
RGD
PMID:16790474 GO_REF:0000024 MGI:3697513 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817
JBrowse link
G Smad4 SMAD family member 4 involved_in IEA
ISO
GO_REF:0000107
(MGI:3623046|PMID:15342483)
Ensembl
RGD
PMID:15342483 GO_REF:0000107 MGI:3623046 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438
JBrowse link
nephrogenic mesenchyme development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxd1 forkhead box D1 involved_in IEA
ISO
GO_REF:0000107
(MGI:3525902|PMID:15634693)
Ensembl
RGD
PMID:15634693 GO_REF:0000107 MGI:3525902 NCBI chr 2:29,702,558...29,704,978
Ensembl chr 2:29,702,558...29,704,978
JBrowse link
nephrogenic mesenchyme morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 involved_in ISO UniProtKB:P97471 (MGI:3623046|PMID:15342483) RGD PMID:15342483 MGI:3623046 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Smad4 SMAD family member 4 involved_in IEA
ISO
GO_REF:0000107
(MGI:3623046|PMID:15342483)
Ensembl
RGD
PMID:15342483 GO_REF:0000107 MGI:3623046 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438
JBrowse link
positive regulation of metanephric cap mesenchymal cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISS
ISO
GO_REF:0000024
(MGI:3830398|PMID:19161241)
UniProt
RGD
PMID:19161241 GO_REF:0000024 MGI:3830398 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19812
    developmental process 6948
      anatomical structure development 6361
        animal organ development 4181
          mesenchyme development 301
            kidney mesenchyme development 16
              kidney mesenchymal cell proliferation + 2
              kidney mesenchyme morphogenesis + 4
              kidney stroma development 0
              mesenchymal cell differentiation involved in kidney development + 6
              mesonephric mesenchyme development + 0
              metanephric mesenchyme development + 12
              nephrogenic mesenchyme development + 3
Path 2
Term Annotations click to browse term
  biological_process 19812
    developmental process 6948
      anatomical structure development 6361
        multicellular organism development 5787
          system development 5427
            urogenital system development 441
              renal system development 393
                kidney development 379
                  kidney mesenchyme development 16
                    kidney mesenchymal cell proliferation + 2
                    kidney mesenchyme morphogenesis + 4
                    kidney stroma development 0
                    mesenchymal cell differentiation involved in kidney development + 6
                    mesonephric mesenchyme development + 0
                    metanephric mesenchyme development + 12
                    nephrogenic mesenchyme development + 3
paths to the root