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ONTOLOGY REPORT - ANNOTATIONS

Term:collecting duct development
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Accession:GO:0072044 term browser browse the term
Definition:The process whose specific outcome is the progression of a collecting duct over time, from its formation to the mature structure. The collecting duct responds to vasopressin and aldosterone to regulate water, electrolyte and acid-base balance. It is the final common path through which urine flows before entering the ureter and then emptying into the bladder.


show annotations for term's descendants           Sort by:
collecting duct development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NOTCH1 notch receptor 1 involved_in IEA Ensembl GO_REF:0000107
G SPP1 secreted phosphoprotein 1 acts_upstream_of_or_within ISO (PMID:17898038) MGI PMID:17898038 NCBI chr 8:131,077,786...131,085,334
Ensembl chr 8:131,077,786...131,085,340 		JBrowse link
G TFAP2B transcription factor AP-2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:44,745,653...44,774,563
Ensembl chr 7:44,745,827...44,770,606 		JBrowse link
G UMOD uromodulin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17898038) Ensembl
MGI		 PMID:17898038 GO_REF:0000107 NCBI chr 3:25,473,048...25,492,286
Ensembl chr 3:25,473,162...25,492,278 		JBrowse link
G WNT9B Wnt family member 9B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16054034) Ensembl
MGI		 PMID:16054034 GO_REF:0000107 NCBI chr12:17,709,046...17,733,434
Ensembl chr12:17,709,046...17,733,431 		JBrowse link
inner medullary collecting duct development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1B1 aldo-keto reductase family 1 member B ISO RGD PMID:1401064 RGD:8548768 NCBI chr18:14,593,516...14,752,316
Ensembl chr18:14,684,036...14,752,310 		JBrowse link
G DACT2 dishevelled binding antagonist of beta catenin 2 involved_in ISO (MGI:4833906|PMID:20685821) UniProt PMID:20685821 MGI:4833906 NCBI chr 1:1,413,892...1,424,015
Ensembl chr 1:1,413,935...1,424,271 		JBrowse link
G WNT7B Wnt family member 7B acts_upstream_of_or_within ISO (PMID:19060336) MGI PMID:19060336 NCBI chr 5:3,521,412...3,572,322
Ensembl chr 5:3,521,288...3,572,314 		JBrowse link
metanephric collecting duct development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1B1 aldo-keto reductase family 1 member B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16449351) Ensembl
MGI		 PMID:16449351 GO_REF:0000107 NCBI chr18:14,593,516...14,752,316
Ensembl chr18:14,684,036...14,752,310 		JBrowse link
G AQP2 aquaporin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:15,862,739...15,868,565
Ensembl chr 5:15,863,486...15,868,565 		JBrowse link
G CALB1 calbindin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:46,701,276...46,723,548
Ensembl chr 4:46,701,045...46,725,197 		JBrowse link
G DLG5 discs large MAGUK scaffold protein 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17765678) Ensembl
MGI		 PMID:17765678 GO_REF:0000107 NCBI chr14:80,249,693...80,377,496
Ensembl chr14:80,249,697...80,377,064 		JBrowse link
G PAX2 paired box 2 involved_in ISO (MGI:1889171|PMID:10980123) UniProt PMID:10980123 MGI:1889171 NCBI chr14:111,822,334...111,914,950
Ensembl chr14:111,823,308...111,913,969 		JBrowse link
G PKD1 polycystin 1, transient receptor potential channel interacting involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:39,849,579...39,899,455
Ensembl chr 3:39,849,609...39,899,455 		JBrowse link
G PTCH1 patched 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:26,627,165...26,703,225
Ensembl chr10:26,627,425...26,703,223 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484 		JBrowse link
G WNT7B Wnt family member 7B acts_upstream_of_or_within ISO (PMID:19060336) MGI PMID:19060336 NCBI chr 5:3,521,412...3,572,322
Ensembl chr 5:3,521,288...3,572,314 		JBrowse link
negative regulation of apoptotic process involved in metanephric collecting duct development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX2 paired box 2 involved_in ISO (MGI:3704067|PMID:17314325) UniProt PMID:17314325 MGI:3704067 NCBI chr14:111,822,334...111,914,950
Ensembl chr14:111,823,308...111,913,969 		JBrowse link
outer medullary collecting duct development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT7B Wnt family member 7B acts_upstream_of_or_within ISO (PMID:19060336) MGI PMID:19060336 NCBI chr 5:3,521,412...3,572,322
Ensembl chr 5:3,521,288...3,572,314 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17799
    multicellular organismal process 8688
      multicellular organism development 5105
        tube development 1306
          collecting duct development 15
            inner medullary collecting duct development 3
            mesonephric collecting duct development 0
            metanephric collecting duct development + 9
            outer medullary collecting duct development 1
Path 2
Term Annotations click to browse term
  biological_process 17799
    developmental process 6719
      anatomical structure development 6314
        multicellular organism development 5105
          system development 4453
            renal system development 410
              kidney development 398
                collecting duct development 15
                  inner medullary collecting duct development 3
                  mesonephric collecting duct development 0
                  metanephric collecting duct development + 9
                  outer medullary collecting duct development 1
paths to the root