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ONTOLOGY REPORT - ANNOTATIONS


Term:renal vesicle formation
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Accession:GO:0072033 term browser browse the term
Definition:The developmental process pertaining to the initial formation of the renal vesicle from condensed mesenchymal cells. The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells.
Synonyms:related_synonym: nephron epithelium formation



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renal vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1858008 (MGI:3714576|PMID:17537789)
Ensembl
RGD
PMID:17537789 GO_REF:0000107 MGI:3714576 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Wnt4 Wnt family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3588895|PMID:16054034)
Ensembl
RGD
PMID:16054034 GO_REF:0000107 MGI:3588895 NCBI chr 5:149,513,573...149,535,415
Ensembl chr 5:149,514,018...149,532,859
JBrowse link
mesenchymal to epithelial transition involved in metanephric renal vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smo smoothened, frizzled class receptor involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:3611729|PMID:16396903)
Ensembl
UniProt
RGD
PMID:16396903 GO_REF:0000024 GO_REF:0000107 MGI:3611729 NCBI chr 4:58,344,101...58,372,828
Ensembl chr 4:58,343,529...58,373,829
JBrowse link
renal vesicle induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox8 SRY-box transcription factor 8 involved_in ISS
ISO
GO_REF:0000024
(MGI:4939090|PMID:21212101)
UniProt
RGD
PMID:21212101 GO_REF:0000024 MGI:4939090 NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISS
ISO
GO_REF:0000024
(MGI:4939090|PMID:21212101)
UniProt
RGD
PMID:21212101 GO_REF:0000024 MGI:4939090 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Wnt4 Wnt family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:2150217|PMID:11507767)
Ensembl
RGD
PMID:11507767 GO_REF:0000107 MGI:2150217 NCBI chr 5:149,513,573...149,535,415
Ensembl chr 5:149,514,018...149,532,859
JBrowse link
ureteric bud invasion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmn1 formin 1 acts_upstream_of_or_within ISO (MGI:65439|PMID:7517224) RGD PMID:7517224 MGI:65439 NCBI chr 3:100,101,103...100,485,652
Ensembl chr 3:100,134,549...100,479,220
JBrowse link
G Kif26b kinesin family member 26B acts_upstream_of_or_within ISO MGI:4459557 (MGI:4454194|PMID:20439720) RGD PMID:20439720 MGI:4454194 NCBI chr13:90,282,821...90,689,058
Ensembl chr13:90,283,404...90,682,811
JBrowse link
G Sall1 spalt-like transcription factor 1 acts_upstream_of_or_within
involved_in
ISO MGI:2388379 (MGI:3665498|PMID:16839447)
(MGI:2149437|PMID:11688560)
RGD PMID:11688560 PMID:16839447 MGI:2149437 MGI:3665498 NCBI chr19:18,005,782...18,022,705
Ensembl chr19:18,007,503...18,022,705
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    developmental process 6965
      anatomical structure formation involved in morphogenesis 1245
        renal vesicle formation 8
          mesenchymal to epithelial transition involved in renal vesicle formation + 1
          mesonephric renal vesicle formation + 0
          metanephric renal vesicle formation + 4
          pre-tubular aggregate formation + 0
          renal vesicle induction + 3
Path 2
Term Annotations click to browse term
  biological_process 19834
    developmental process 6965
      anatomical structure development 6376
        multicellular organism development 5800
          system development 5439
            urogenital system development 445
              renal system development 397
                kidney development 383
                  nephron development 172
                    nephron epithelium development 129
                      renal vesicle development 20
                        renal vesicle morphogenesis 18
                          renal vesicle formation 8
                            mesenchymal to epithelial transition involved in renal vesicle formation + 1
                            mesonephric renal vesicle formation + 0
                            metanephric renal vesicle formation + 4
                            pre-tubular aggregate formation + 0
                            renal vesicle induction + 3
paths to the root