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ONTOLOGY REPORT - ANNOTATIONS


Term:nitrogen cycle metabolic process
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Accession:GO:0071941 term browser browse the term
Definition:A nitrogen compound metabolic process that contributes to the nitrogen cycle. The nitrogen cycle is a series of metabolic pathways by which nitrogen is converted between various forms and redox states; it encompasses pathways in which nitrogen is acted upon directly, such as nitrification, denitrification, nitrogen fixation, and mineralization.
Synonyms:xref: Wikipedia:Nitrogen_cycle



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nitrate assimilation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYB5R2 cytochrome b5 reductase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:7,665,095...7,674,267
Ensembl chr11:7,665,100...7,677,222
JBrowse link
G RIPPLY2-CYB5R4 RIPPLY2-CYB5R4 readthrough involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:83,853,360...83,967,423 JBrowse link
regulation of urea metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NR1H4 nuclear receptor subfamily 1 group H member 4 involved_in ISS
IEA
(PMID:21757002) BHF-UCL
Ensembl
PMID:21757002 GO_REF:0000107 NCBI chr12:100,473,866...100,564,414
Ensembl chr12:100,473,708...100,564,414
JBrowse link
urea cycle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC068533.4 novel protein involved_in IEA UniProt GO_REF:0000041 GO_REF:0000043 Ensembl chr 7:66,087,761...66,152,277 JBrowse link
G AGMAT agmatinase involved_in IEA UniProt GO_REF:0000041 NCBI chr 1:15,571,699...15,585,051
Ensembl chr 1:15,571,699...15,585,051
JBrowse link
G ARG1 arginase 1 involved_in ISO
IEA
RGD
UniProt
PMID:4062872 GO_REF:0000041 GO_REF:0000043 RGD:2300098 NCBI chr 6:131,573,226...131,584,329
Ensembl chr 6:131,470,832...131,584,332
JBrowse link
G ARG2 arginase 2 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000043 NCBI chr14:67,619,920...67,651,708
Ensembl chr14:67,619,920...67,651,708
JBrowse link
G ASL argininosuccinate lyase involved_in ISO
IEA
RGD
UniProt
PMID:4062872 GO_REF:0000041 GO_REF:0000043 RGD:2300098 NCBI chr 7:66,075,819...66,093,576
Ensembl chr 7:66,075,800...66,094,697
JBrowse link
G ASS1 argininosuccinate synthase 1 involved_in ISO
IEA
IBA
IMP
(PMID:18473344), (PMID:27287393), (PMID:7977368), (PMID:8792870) RGD
TreeGrafter
GO_Central
UniProt
Ensembl
PMID:4062872 PMID:7977368 PMID:8792870 PMID:18473344 PMID:27287393 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 RGD:2300098 NCBI chr 9:130,444,707...130,501,274
Ensembl chr 9:130,444,961...130,501,274
JBrowse link
G CEBPA CCAAT enhancer binding protein alpha acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3712404|PMID:17213233) MGI
Ensembl
PMID:17213233 GO_REF:0000107 MGI:3712404 NCBI chr19:33,299,934...33,302,534
Ensembl chr19:33,299,934...33,302,534
JBrowse link
G CPS1 carbamoyl-phosphate synthase 1 involved_in ISO
TAS
IEA
NAS
(PMID:1840546) RGD
Reactome
UniProt
Ensembl
BHF-UCL
PMID:1840546 PMID:3680220 PMID:4062872 GO_REF:0000043 GO_REF:0000107 RGD:1582379 RGD:2300098 Reactome:R-HSA-70635 NCBI chr 2:210,477,685...210,679,107
Ensembl chr 2:210,477,682...210,679,107
JBrowse link
G FH fumarate hydratase acts_upstream_of ISS UniProt GO_REF:0000024 NCBI chr 1:241,497,603...241,519,755
Ensembl chr 1:241,497,511...241,519,799
JBrowse link
G HTT huntingtin acts_upstream_of_or_within ISO (MGI:3712404|PMID:17213233) MGI PMID:17213233 MGI:3712404 NCBI chr 4:3,074,681...3,243,960
Ensembl chr 4:3,041,363...3,243,957
JBrowse link
G NAGS N-acetylglutamate synthase involved_in IEA
TAS
UniProt
Reactome
GO_REF:0000043 Reactome:R-HSA-70635 NCBI chr17:44,004,622...44,009,068
Ensembl chr17:44,004,622...44,009,068
JBrowse link
G OTC ornithine transcarbamylase involved_in ISO
IEA
IDA
(PMID:2556444) RGD
UniProt
BHF-UCL
Ensembl
PMID:2556444 PMID:3680220 PMID:4062872 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 RGD:1582379 RGD:2300098 NCBI chr  X:38,327,684...38,422,928
Ensembl chr  X:38,352,586...38,421,446
JBrowse link
G SLC25A15 solute carrier family 25 member 15 involved_in TAS (PMID:10369256) PINC PMID:10369256 Reactome:R-HSA-70635 NCBI chr13:40,789,611...40,812,460
Ensembl chr13:40,789,412...40,812,460
JBrowse link
G SLC25A2 solute carrier family 25 member 2 involved_in TAS Reactome Reactome:R-HSA-70635 NCBI chr 5:141,302,635...141,304,049
Ensembl chr 5:141,302,635...141,304,049
JBrowse link
urea metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP2C9 cytochrome P450 family 2 subfamily C member 9 involved_in IDA (PMID:19029318) BHF-UCL PMID:19029318 NCBI chr10:94,938,658...94,990,091
Ensembl chr10:94,938,658...94,990,091
JBrowse link

Term paths to the root
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Term Annotations click to browse term
  biological_process 19758
    metabolic process 12488
      nitrogen compound metabolic process 10195
        nitrogen cycle metabolic process 18
          denitrification pathway 0
          negative regulation of nitrogen cycle metabolic process + 0
          nitrate assimilation + 2
          nitrogen fixation 0
          positive regulation of nitrogen cycle metabolic process + 0
          regulation of nitrogen cycle metabolic process + 1
          urea metabolic process + 16
paths to the root