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ONTOLOGY REPORT - ANNOTATIONS


Term:plasma lipoprotein particle organization
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Accession:GO:0071827 term browser browse the term
Definition:A protein-lipid complex subunit organization process that results in the formation, disassembly, or alteration of a plasma lipoprotein particle. A plasma lipoprotein particle is a spherical particle with a hydrophobic core of triglycerides and/or cholesterol esters, surrounded by an amphipathic monolayer of phospholipids, cholesterol and apolipoproteins.
Synonyms:exact_synonym: plasma lipoprotein particle organisation


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chylomicron assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lpcat3 lysophosphatidylcholine acyltransferase 3 ISS
ISO
GO_REF:0000024
(MGI:5780634|PMID:26833026)
UniProt
RGD
PMID:26833026 GO_REF:0000024, MGI:5780634 NCBI chr 4:157,181,722...157,222,997
Ensembl chr 4:157,181,795...157,222,996
JBrowse link
G Plagl2 PLAG1 like zinc finger 2 ISO MGI:3771822 (MGI:3771409|PMID:17983586) RGD PMID:17983586 MGI:3771409 NCBI chr 3:148,709,564...148,722,777
Ensembl chr 3:148,709,531...148,722,742
JBrowse link
chylomicron remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lipc lipase C, hepatic type IDA RGD PMID:7897313 RGD:2308767 NCBI chr 8:77,272,582...77,398,485
Ensembl chr 8:77,272,570...77,398,248
JBrowse link
G Lpl lipoprotein lipase ISS
ISO
GO_REF:0000024
(PMID:11342582)
UniProt
RGD
PMID:11342582 GO_REF:0000024 NCBI chr16:22,537,687...22,561,487
Ensembl chr16:22,537,056...22,561,496
JBrowse link
high-density lipoprotein particle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 ISO (PMID:10431236), (PMID:14754908), (PMID:17305370) RGD PMID:10431236, PMID:14754908, PMID:17305370 NCBI chr 5:69,857,717...69,983,042
Ensembl chr 5:69,857,771...69,983,015
JBrowse link
G Abca7 ATP binding cassette subfamily A member 7 ISO
IEA
ISS
(PMID:14570867)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
Alzheimers_University_of_Toronto
PMID:14570867 GO_REF:0000024, GO_REF:0000107 NCBI chr 7:12,742,433...12,762,423
Ensembl chr 7:12,742,433...12,762,341
JBrowse link
G Apoa1 apolipoprotein A1 ISO
IBA
(PMID:190223)
PMID:21873635
RGD PMID:190223, PMID:21873635 RGD:13792537 NCBI chr 8:50,525,091...50,526,875
Ensembl chr 8:50,525,091...50,526,875
JBrowse link
G Apoa2 apolipoprotein A2 ISO
IBA
(PMID:218942)
PMID:21873635
RGD PMID:218942, PMID:21873635 RGD:13792537 NCBI chr13:89,596,872...89,598,805
Ensembl chr13:89,597,138...89,598,802
JBrowse link
G Apoa4 apolipoprotein A4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:50,536,983...50,539,371
Ensembl chr 8:50,537,009...50,539,376
JBrowse link
G Apoa5 apolipoprotein A5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:50,559,079...50,561,720
Ensembl chr 8:50,559,126...50,561,736
JBrowse link
G Apoe apolipoprotein E IEA
ISO
ISS
GO_REF:0000107
(PMID:14754908), (PMID:17305370)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:14754908, PMID:17305370 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
G Apom apolipoprotein M IBA
ISO
PMID:21873635
(MGI:3575626|PMID:15793583)
RGD PMID:15793583, PMID:21873635 MGI:3575626, RGD:13792537 NCBI chr20:5,120,473...5,123,073
Ensembl chr20:5,120,474...5,123,073
JBrowse link
high-density lipoprotein particle remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca5 ATP binding cassette subfamily A member 5 IEA
ISO
GO_REF:0000107
(MGI:4454250|PMID:20382126)
Ensembl
RGD
PMID:20382126 GO_REF:0000107, MGI:4454250 NCBI chr10:98,573,226...98,645,028
Ensembl chr10:98,576,039...98,644,938
JBrowse link
G Abcg1 ATP binding cassette subfamily G member 1 ISO (MGI:3852307|PMID:16556852), (MGI:5634884|PMID:21481393) RGD PMID:16556852, PMID:21481393 MGI:3852307, MGI:5634884 NCBI chr20:9,743,269...9,842,735
Ensembl chr20:9,743,269...9,840,489
JBrowse link
G Apoa1 apolipoprotein A1 ISO (PMID:21481393) RGD PMID:21481393 NCBI chr 8:50,525,091...50,526,875
Ensembl chr 8:50,525,091...50,526,875
JBrowse link
G Apoa2 apolipoprotein A2 ISO
IBA
(PMID:14967812), (PMID:8106353)
PMID:21873635
RGD PMID:8106353, PMID:14967812, PMID:21873635 RGD:13792537 NCBI chr13:89,596,872...89,598,805
Ensembl chr13:89,597,138...89,598,802
JBrowse link
G Apoc3 apolipoprotein C3 ISO
IEA
(PMID:17438339)
GO_REF:0000107
RGD
Ensembl
PMID:17438339 GO_REF:0000107 NCBI chr 8:50,529,318...50,531,498
Ensembl chr 8:50,529,318...50,531,498
JBrowse link
G Apoe apolipoprotein E ISO
IEA
UniProtKB:P08226 (PMID:12401887)
GO_REF:0000107
RGD
Ensembl
PMID:12401887 GO_REF:0000107 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
G Apom apolipoprotein M ISO
IBA
(PMID:18006500)
(MGI:3575626|PMID:15793583)
PMID:21873635
RGD PMID:15793583, PMID:18006500, PMID:21873635 MGI:3575626, RGD:13792537 NCBI chr20:5,120,473...5,123,073
Ensembl chr20:5,120,474...5,123,073
JBrowse link
G Lcat lecithin cholesterol acyltransferase ISO (PMID:10722751), (PMID:12167653), (PMID:15210842), (PMID:4335615) RGD PMID:4335615, PMID:10722751, PMID:12167653, PMID:15210842 NCBI chr19:37,913,333...37,916,799
Ensembl chr19:37,913,336...37,916,813
JBrowse link
G Lipc lipase C, hepatic type IDA
IEA
ISO
GO_REF:0000107
(PMID:3244012)
Ensembl
RGD
PMID:3244012, PMID:8157689 GO_REF:0000107, RGD:2308770 NCBI chr 8:77,272,582...77,398,485
Ensembl chr 8:77,272,570...77,398,248
JBrowse link
G Lipg lipase G, endothelial type ISO (PMID:19136670) RGD PMID:19136670 NCBI chr18:70,903,528...70,924,434
Ensembl chr18:70,901,710...70,924,708
JBrowse link
G Pla2g3 phospholipase A2, group III ISO (PMID:18801741) RGD PMID:18801741 NCBI chr14:83,724,828...83,730,614
Ensembl chr14:83,724,933...83,730,614
JBrowse link
G Pltp phospholipid transfer protein IBA
ISO
PMID:21873635
(PMID:24369175), (PMID:29883800), (PMID:9132017)
RGD PMID:9132017, PMID:24369175, PMID:29883800, PMID:21873635 RGD:13792537 NCBI chr 3:161,304,469...161,322,289
Ensembl chr 3:161,304,469...161,322,289
JBrowse link
G Scarb1 scavenger receptor class B, member 1 ISO (MGI:3056693|PMID:15210842), (MGI:5634884|PMID:21481393) RGD PMID:15210842, PMID:21481393 MGI:3056693, MGI:5634884 NCBI chr12:36,694,952...36,761,445
Ensembl chr12:36,694,960...36,761,455
JBrowse link
low-density lipoprotein particle remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcg1 ATP binding cassette subfamily G member 1 ISO (MGI:3852307|PMID:16556852) RGD PMID:16556852 MGI:3852307 NCBI chr20:9,743,269...9,842,735
Ensembl chr20:9,743,269...9,840,489
JBrowse link
G Apoa2 apolipoprotein A2 ISO
IBA
(PMID:8106353)
PMID:21873635
RGD PMID:8106353, PMID:21873635 RGD:13792537 NCBI chr13:89,596,872...89,598,805
Ensembl chr13:89,597,138...89,598,802
JBrowse link
G Apob apolipoprotein B ISO (PMID:15797858) RGD PMID:15797858 NCBI chr 6:33,176,826...33,216,381
Ensembl chr 6:33,176,778...33,224,997
JBrowse link
G Apoe apolipoprotein E ISO (MGI:3850619|PMID:15654758) RGD PMID:15654758 MGI:3850619 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
G Lipc lipase C, hepatic type IDA
IEA
ISO
GO_REF:0000107
PMID:9685400
(PMID:3244012)
Ensembl
RGD
PMID:3244012, PMID:8071607, PMID:9685400 GO_REF:0000107, RGD:2308769, RGD:2308763 NCBI chr 8:77,272,582...77,398,485
Ensembl chr 8:77,272,570...77,398,248
JBrowse link
G Mpo myeloperoxidase ISO (PMID:10772654) RGD PMID:10772654 NCBI chr10:75,087,892...75,098,260
Ensembl chr10:75,087,892...75,098,260
JBrowse link
G Mttp microsomal triglyceride transfer protein ISO (MGI:6095248|PMID:27471003) RGD PMID:27471003 MGI:6095248 NCBI chr 2:243,366,181...243,407,608
Ensembl chr 2:243,366,181...243,407,608
JBrowse link
G Pla2g10 phospholipase A2, group X ISO
IEA
(PMID:12021277)
GO_REF:0000107
RGD
Ensembl
PMID:12021277 GO_REF:0000107 NCBI chr10:1,509,732...1,520,970
Ensembl chr10:1,509,732...1,520,970
JBrowse link
G Pla2g12b phospholipase A2, group XIIB ISO (MGI:6095248|PMID:27471003) RGD PMID:27471003 MGI:6095248 NCBI chr20:28,989,440...29,007,967
Ensembl chr20:28,989,491...29,007,968
JBrowse link
G Pla2g2e phospholipase A2, group IIE ISO MGI:5660236 (MGI:5605113|PMID:24910243) RGD PMID:24910243 MGI:5605113 NCBI chr 5:157,327,657...157,333,039
Ensembl chr 5:157,327,657...157,333,039
JBrowse link
G Pla2g3 phospholipase A2, group III ISO (PMID:18801741) RGD PMID:18801741 NCBI chr14:83,724,828...83,730,614
Ensembl chr14:83,724,933...83,730,614
JBrowse link
G Pla2g5 phospholipase A2, group V ISS
ISO
GO_REF:0000024
MGI:3042209 (MGI:5605113|PMID:24910243), (MGI:6393145|PMID:14962950)
UniProt
RGD
PMID:14962950, PMID:24910243 GO_REF:0000024, MGI:5605113, MGI:6393145 NCBI chr 5:157,247,601...157,268,968
Ensembl chr 5:157,247,781...157,268,903
JBrowse link
G Pla2g7 phospholipase A2 group VII ISO (PMID:8624782) RGD PMID:8624782 NCBI chr 9:19,935,754...19,978,013
Ensembl chr 9:19,935,768...19,978,013
JBrowse link
negative regulation of plasma lipoprotein oxidation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa4 apolipoprotein A4 ISO
IEA
(PMID:16945374)
GO_REF:0000107
RGD
Ensembl
PMID:16945374 GO_REF:0000107 NCBI chr 8:50,536,983...50,539,371
Ensembl chr 8:50,537,009...50,539,376
JBrowse link
G Apom apolipoprotein M ISO (PMID:16682745), (PMID:22204862)
(MGI:5427066|PMID:22204862)
RGD PMID:16682745, PMID:22204862 MGI:5427066 NCBI chr20:5,120,473...5,123,073
Ensembl chr20:5,120,474...5,123,073
JBrowse link
G Pon1 paraoxonase 1 NOT ISO (PMID:15342686) RGD PMID:15342686 NCBI chr 4:30,249,749...30,276,297
Ensembl chr 4:30,249,742...30,276,372
JBrowse link
negative regulation of very-low-density lipoprotein particle remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa1 apolipoprotein A1 ISO (PMID:14967812) RGD PMID:14967812 NCBI chr 8:50,525,091...50,526,875
Ensembl chr 8:50,525,091...50,526,875
JBrowse link
G Apoa2 apolipoprotein A2 ISO (PMID:14967812) RGD PMID:14967812 NCBI chr13:89,596,872...89,598,805
Ensembl chr13:89,597,138...89,598,802
JBrowse link
G Apoc3 apolipoprotein C3 ISO
IEA
(PMID:3973011)
GO_REF:0000107
RGD
Ensembl
PMID:3973011 GO_REF:0000107 NCBI chr 8:50,529,318...50,531,498
Ensembl chr 8:50,529,318...50,531,498
JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 ISO
IEA
(PMID:27471003)
(MGI:6095248|PMID:27471003)
GO_REF:0000107
RGD
Ensembl
PMID:27471003 GO_REF:0000107, MGI:6095248 NCBI chr 7:30,003,429...30,162,095
Ensembl chr 7:30,003,429...30,162,056
JBrowse link
plasma lipoprotein particle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mttp microsomal triglyceride transfer protein ISO
ISS
(PMID:16478722), (PMID:23475612), (PMID:26224785), (PMID:8876250)
GO_REF:0000024
RGD
UniProt
PMID:8876250, PMID:16478722, PMID:23475612, PMID:26224785 GO_REF:0000024 NCBI chr 2:243,366,181...243,407,608
Ensembl chr 2:243,366,181...243,407,608
JBrowse link
plasma lipoprotein particle oxidation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pla2g7 phospholipase A2 group VII ISO (PMID:8624782) RGD PMID:8624782 NCBI chr 9:19,935,754...19,978,013
Ensembl chr 9:19,935,768...19,978,013
JBrowse link
plasma lipoprotein particle remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoc1 apolipoprotein C1 ISO (PMID:10978346) RGD PMID:10978346 NCBI chr 1:80,606,638...80,609,921
Ensembl chr 1:80,606,638...80,609,921
JBrowse link
positive regulation of high-density lipoprotein particle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 ISO (MGI:5427333|PMID:22179027) RGD PMID:22179027 MGI:5427333 NCBI chr 5:69,857,717...69,983,042
Ensembl chr 5:69,857,771...69,983,015
JBrowse link
G Nr1h2 nuclear receptor subfamily 1, group H, member 2 ISO (MGI:3720271|PMID:17657314), (MGI:3794353|PMID:16825483) RGD PMID:16825483, PMID:17657314 MGI:3720271, MGI:3794353 NCBI chr 1:100,554,577...100,559,896
Ensembl chr 1:100,554,544...100,559,942
JBrowse link
positive regulation of very-low-density lipoprotein particle remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa5 apolipoprotein A5 ISO
IEA
(PMID:18635818)
GO_REF:0000107
RGD
Ensembl
PMID:18635818 GO_REF:0000107 NCBI chr 8:50,559,079...50,561,720
Ensembl chr 8:50,559,126...50,561,736
JBrowse link
regulation of high-density lipoprotein particle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lcat lecithin cholesterol acyltransferase ISO (MGI:3848791|PMID:19065001) RGD PMID:19065001 MGI:3848791 NCBI chr19:37,913,333...37,916,799
Ensembl chr19:37,913,336...37,916,813
JBrowse link
triglyceride-rich lipoprotein particle remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa2 apolipoprotein A2 ISO
IBA
(PMID:14967812)
PMID:21873635
RGD PMID:14967812, PMID:21873635 RGD:13792537 NCBI chr13:89,596,872...89,598,805
Ensembl chr13:89,597,138...89,598,802
JBrowse link
G Apoa5 apolipoprotein A5 IEA
ISO
GO_REF:0000107
MGI:3609233 (MGI:3695062|PMID:16166565)
Ensembl
RGD
PMID:16166565 GO_REF:0000107, MGI:3695062 NCBI chr 8:50,559,079...50,561,720
Ensembl chr 8:50,559,126...50,561,736
JBrowse link
very-low-density lipoprotein particle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl3 acyl-CoA synthetase long-chain family member 3 ISO (PMID:18003621) RGD PMID:18003621 NCBI chr 9:84,569,601...84,593,565
Ensembl chr 9:84,569,597...84,593,565
JBrowse link
G Arf1 ADP-ribosylation factor 1 IMP RGD PMID:15618550 RGD:9684856 NCBI chr10:45,562,700...45,579,214
Ensembl chr10:45,563,547...45,579,029
JBrowse link
G Ces1d carboxylesterase 1D IEA
ISO
GO_REF:0000107
MGI:4440967 (MGI:4440377|PMID:20197051)
Ensembl
RGD
PMID:20197051 GO_REF:0000107, MGI:4440377 NCBI chr19:15,195,514...15,239,827
Ensembl chr19:15,033,108...15,239,821
JBrowse link
G Dgat1 diacylglycerol O-acyltransferase 1 ISO
IEA
(PMID:15308631)
GO_REF:0000107
RGD
Ensembl
PMID:15308631 GO_REF:0000107 NCBI chr 7:117,566,363...117,576,735
Ensembl chr 7:117,566,368...117,576,737
JBrowse link
G Fech ferrochelatase ISO MGI:1858114 (MGI:1930023|PMID:11160364) RGD PMID:11160364 MGI:1930023 NCBI chr18:59,941,992...59,975,192
Ensembl chr18:59,941,992...59,975,192
JBrowse link
G Lpcat3 lysophosphatidylcholine acyltransferase 3 ISS
ISO
GO_REF:0000024
(MGI:5636535|PMID:25806685)
UniProt
RGD
PMID:25806685 GO_REF:0000024, MGI:5636535 NCBI chr 4:157,181,722...157,222,997
Ensembl chr 4:157,181,795...157,222,996
JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A ISO (MGI:5474727|PMID:23209793) RGD PMID:23209793 MGI:5474727 NCBI chr 5:140,642,865...140,657,759
Ensembl chr 5:140,642,885...140,657,745
JBrowse link
G Soat1 sterol O-acyltransferase 1 ISO
IEA
(PMID:15308631)
GO_REF:0000107
RGD
Ensembl
PMID:15308631 GO_REF:0000107 NCBI chr13:74,035,258...74,077,759
Ensembl chr13:74,035,080...74,077,783
JBrowse link
G Soat2 sterol O-acyltransferase 2 ISO
IEA
(PMID:15308631)
GO_REF:0000107
RGD
Ensembl
PMID:15308631 GO_REF:0000107 NCBI chr 7:143,754,892...143,767,989
Ensembl chr 7:143,754,892...143,767,989
JBrowse link
very-low-density lipoprotein particle remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa1 apolipoprotein A1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:50,525,091...50,526,875
Ensembl chr 8:50,525,091...50,526,875
JBrowse link
G Apoa4 apolipoprotein A4 ISO
IBA
IEA
(PMID:2307668)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:2307668, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 8:50,536,983...50,539,371
Ensembl chr 8:50,537,009...50,539,376
JBrowse link
G Apoa5 apolipoprotein A5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:50,559,079...50,561,720
Ensembl chr 8:50,559,126...50,561,736
JBrowse link
G Apoe apolipoprotein E IEA
ISO
GO_REF:0000107
(MGI:3850619|PMID:15654758)
UniProtKB:P08226 (PMID:12401887), (PMID:15654758)
Ensembl
RGD
PMID:12401887, PMID:15654758 GO_REF:0000107, MGI:3850619 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
G Lcat lecithin cholesterol acyltransferase ISO (PMID:15654758) RGD PMID:15654758 NCBI chr19:37,913,333...37,916,799
Ensembl chr19:37,913,336...37,916,813
JBrowse link
G Lipc lipase C, hepatic type IDA
IEA
ISO
GO_REF:0000107
(PMID:8640403)
Ensembl
RGD
PMID:8640403, PMID:6791934 GO_REF:0000107, RGD:2308780 NCBI chr 8:77,272,582...77,398,485
Ensembl chr 8:77,272,570...77,398,248
JBrowse link
G Lpl lipoprotein lipase ISO (PMID:3973011) RGD PMID:3973011 NCBI chr16:22,537,687...22,561,487
Ensembl chr16:22,537,056...22,561,496
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    multicellular organismal process 9047
      plasma lipoprotein particle organization 40
        plasma lipoprotein particle assembly + 21
        plasma lipoprotein particle disassembly + 0
        plasma lipoprotein particle remodeling + 27
Path 2
Term Annotations click to browse term
  biological_process 20020
    cellular process 18792
      cellular component organization or biogenesis 6789
        cellular component organization 6534
          protein-containing complex subunit organization 1813
            protein-lipid complex subunit organization 44
              plasma lipoprotein particle organization 40
                plasma lipoprotein particle assembly + 21
                plasma lipoprotein particle disassembly + 0
                plasma lipoprotein particle remodeling + 27
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.