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ONTOLOGY REPORT - ANNOTATIONS


Term:ribonucleoprotein complex subunit organization
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Accession:GO:0071826 term browser browse the term
Definition:Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a ribonucleoprotein complex.
Synonyms:exact_synonym: protein-RNA complex subunit organization;   ribonucleoprotein complex subunit organisation



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90S preribosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl38 ribosomal protein L38 acts_upstream_of_or_within ISO (MGI:5014009|PMID:21529712) RGD PMID:21529712 MGI:5014009 NCBI chr10:99,701,330...99,705,004
Ensembl chr10:99,701,362...99,705,004
JBrowse link
assembly of large subunit precursor of preribosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif6 eukaryotic translation initiation factor 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:144,325,038...144,331,396
Ensembl chr 3:144,325,036...144,331,401
JBrowse link
box C/D snoRNP assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nopchap1 NOP protein chaperone 1 involved_in ISO
IBA
(PMID:33367824)
PMID:21873635
RGD PMID:33367824 PMID:21873635 RGD:13792537 NCBI chr 7:20,353,626...20,359,685
Ensembl chr 7:20,353,634...20,359,690
JBrowse link
G Nufip1 nuclear FMR1 interacting protein 1 involved_in ISO
IBA
(PMID:17636026)
PMID:21873635
RGD PMID:17636026 PMID:21873635 RGD:13792537 NCBI chr15:51,429,518...51,460,308
Ensembl chr15:51,429,549...51,460,310
JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO
IBA
(PMID:17636026)
PMID:21873635
RGD PMID:17636026 PMID:21873635 RGD:13792537 NCBI chr 1:95,639,597...95,645,295
Ensembl chr 1:95,639,592...95,645,290
JBrowse link
G Pih1d2 PIH1 domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:50,966,885...50,976,901
Ensembl chr 8:50,966,885...50,975,656
JBrowse link
G RGD1564855 similar to RuvB-like protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:1,640,138...1,641,886
Ensembl chr  X:1,640,300...1,641,811
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:95,902,014...95,915,364
Ensembl chr 1:95,901,701...95,915,342
JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 involved_in ISO (MGI:5882914|PMID:11842104) RGD PMID:11842104 MGI:5882914 NCBI chr 7:113,565,903...113,570,871
Ensembl chr 7:113,565,295...113,570,872
JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in ISO
IEA
(PMID:17636026)
GO_REF:0000107
RGD
Ensembl
PMID:17636026 GO_REF:0000107 NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769
JBrowse link
G Znhit3 zinc finger, HIT-type containing 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:69,775,885...69,790,471
Ensembl chr10:69,748,789...69,790,475
JBrowse link
G Znhit6 zinc finger, HIT-type containing 6 involved_in IBA
ISO
PMID:21873635
(PMID:17636026)
RGD PMID:17636026 PMID:21873635 RGD:13792537 NCBI chr 2:234,486,686...234,517,952
Ensembl chr 2:234,486,704...234,517,960
JBrowse link
box H/ACA snoRNP assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Naf1 nuclear assembly factor 1 ribonucleoprotein involved_in IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr16:22,837,586...22,868,293
Ensembl chr16:22,837,588...22,868,293
JBrowse link
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:133,213,357...133,305,586
Ensembl chr 4:133,213,361...133,305,586
JBrowse link
formation of cytoplasmic translation initiation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif2s2 eukaryotic translation initiation factor 2 subunit beta involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:143,374,652...143,395,460
Ensembl chr 3:143,373,686...143,395,432
JBrowse link
G Eif3a eukaryotic translation initiation factor 3, subunit A involved_in IBA
ISO
ISS
PMID:21873635
(MGI:3843422|PMID:17581632)
GO_REF:0000024
(PMID:17581632)
RGD
UniProt
PMID:17581632 PMID:21873635 GO_REF:0000024 MGI:3843422, RGD:13792537 NCBI chr 1:259,902,767...259,932,976
Ensembl chr 1:259,902,680...259,932,976
JBrowse link
G Eif3b eukaryotic translation initiation factor 3, subunit B involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr12:14,196,403...14,220,865
Ensembl chr12:14,196,403...14,220,886
JBrowse link
G Eif3c eukaryotic translation initiation factor 3, subunit C involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:181,134,604...181,152,489
Ensembl chr 1:181,134,604...181,152,493
JBrowse link
G Eif3d eukaryotic translation initiation factor 3, subunit D involved_in ISO (MGI:3843422|PMID:17581632) RGD PMID:17581632 MGI:3843422 NCBI chr 7:109,539,795...109,552,184
Ensembl chr 7:109,539,356...109,552,206
JBrowse link
G Eif3e eukaryotic translation initiation factor 3 subunit E involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 7:74,339,848...74,372,483
Ensembl chr 7:74,339,828...74,373,096
JBrowse link
G Eif3f eukaryotic translation initiation factor 3, subunit F involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:162,934,220...162,943,204
Ensembl chr 1:162,934,212...162,943,204
JBrowse link
G Eif3g eukaryotic translation initiation factor 3, subunit G involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:19,429,728...19,433,760
Ensembl chr 8:19,429,643...19,433,808
JBrowse link
G Eif3h eukaryotic translation initiation factor 3, subunit H involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 7:83,091,045...83,174,436
Ensembl chr 7:83,091,039...83,174,451
JBrowse link
G Eif3i eukaryotic translation initiation factor 3, subunit I involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 5:141,935,135...141,942,589
Ensembl chr 5:141,935,044...141,942,676
JBrowse link
G Eif3j eukaryotic translation initiation factor 3, subunit J involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:108,985,103...109,007,341
Ensembl chr 3:108,985,118...109,007,953
JBrowse link
G Eif3k eukaryotic translation initiation factor 3, subunit K involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:84,260,125...84,270,051
Ensembl chr 1:84,259,673...84,270,302
JBrowse link
G Eif3m eukaryotic translation initiation factor 3, subunit M involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:91,424,754...91,442,358
Ensembl chr 3:91,416,325...91,442,392
JBrowse link
G Eif5 eukaryotic translation initiation factor 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:130,589,200...130,597,656
Ensembl chr 6:130,589,143...130,597,656
JBrowse link
G LOC100365062 eukaryotic translation initiation factor 3, subunit 6 48kDa-like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:73,774,491...73,775,984
Ensembl chr 1:73,774,487...73,776,003
JBrowse link
formation of translation preinitiation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Denr density regulated reinitiation and release factor involved_in ISO
IBA
(PMID:20713520)
PMID:21873635
RGD PMID:20713520 PMID:21873635 RGD:13792537 NCBI chr12:32,662,512...32,685,283
Ensembl chr12:32,662,516...32,683,843
JBrowse link
G Dhx29 DExH-box helicase 29 involved_in ISO (PMID:23047696) RGD PMID:23047696 NCBI chr 2:44,560,653...44,611,450
Ensembl chr 2:44,560,714...44,611,445
JBrowse link
G Eif2d eukaryotic translation initiation factor 2D involved_in IBA
ISO
PMID:21873635
(PMID:20713520)
RGD PMID:20713520 PMID:21873635 RGD:13792537 NCBI chr13:42,615,901...42,637,107
Ensembl chr13:42,615,911...42,639,719
JBrowse link
G Eif2s2 eukaryotic translation initiation factor 2 subunit beta involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:143,374,652...143,395,460
Ensembl chr 3:143,373,686...143,395,432
JBrowse link
G Eif2s3 eukaryotic translation initiation factor 2 subunit gamma involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:58,916,513...58,939,923
Ensembl chr  X:58,917,490...58,940,686
JBrowse link
G Eif2s3y eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  Y:869,654...889,341
Ensembl chr  Y:869,689...889,340
JBrowse link
G Eif4h eukaryotic translation initiation factor 4H involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:22,083,155...22,099,876
Ensembl chr12:22,082,835...22,099,876
JBrowse link
G Eif5 eukaryotic translation initiation factor 5 involved_in IDA
IBA
IMP
PMID:21873635 RGD
GO_Central
PMID:8464924 PMID:21873635 PMID:10805737 RGD:728212, RGD:13792537, RGD:10755758 NCBI chr 6:130,589,200...130,597,656
Ensembl chr 6:130,589,143...130,597,656
JBrowse link
G Mcts1 MCTS1, re-initiation and release factor involved_in ISO
IBA
(PMID:20713520)
PMID:21873635
RGD PMID:20713520 PMID:21873635 RGD:13792537 NCBI chr  X:117,350,723...117,362,504
Ensembl chr  X:117,350,889...117,362,504
JBrowse link
G Rps2 ribosomal protein S2 IMP RGD PMID:344063 RGD:2299070 NCBI chr10:13,747,316...13,749,165
Ensembl chr10:13,747,301...13,749,163
JBrowse link
generation of catalytic spliceosome for first transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RGD1560857 similar to RIKEN cDNA 2900016D05 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr16:21,108,807...21,109,887
Ensembl chr16:21,108,942...21,109,883
JBrowse link
G Xab2 XPA binding protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:1,667,672...1,679,702
Ensembl chr12:1,667,672...1,679,692
JBrowse link
generation of catalytic spliceosome for second transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isy1 ISY1 splicing factor homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188
JBrowse link
G Prpf18 pre-mRNA processing factor 18 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:73,630,560...73,661,210
Ensembl chr17:73,630,571...73,690,979
JBrowse link
messenger ribonucleoprotein complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:29276085) RGD PMID:29276085 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122
JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in ISO
ISS
(PMID:29276085)
GO_REF:0000024
RGD
UniProt
PMID:29276085 GO_REF:0000024 NCBI chr 1:207,167,690...207,191,865
Ensembl chr 1:207,167,859...207,191,905
JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISS
ISO
GO_REF:0000024
(PMID:29276085)
UniProt
RGD
PMID:29276085 GO_REF:0000024 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682
JBrowse link
mitochondrial large ribosomal subunit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx28 DEAD-box helicase 28 involved_in ISO
IBA
(PMID:25683715)
PMID:21873635
RGD PMID:25683715 PMID:21873635 RGD:13792537 NCBI chr19:33,909,799...33,911,729
Ensembl chr19:33,909,801...33,911,742
JBrowse link
G Dhx30 DExH-box helicase 30 involved_in ISO
ISS
(PMID:25683715)
GO_REF:0000024
RGD
UniProt
PMID:25683715 GO_REF:0000024 NCBI chr 8:110,064,751...110,096,954
Ensembl chr 8:110,064,752...110,097,381
JBrowse link
G Fastkd2 FAST kinase domains 2 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:25683715)
Ensembl
UniProt
RGD
PMID:25683715 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:65,166,148...65,188,184
Ensembl chr 9:65,168,228...65,188,174
JBrowse link
G Mrm2 mitochondrial rRNA methyltransferase 2 involved_in ISO
IEA
(PMID:35177605)
GO_REF:0000107
RGD
Ensembl
PMID:35177605 GO_REF:0000107 NCBI chr12:14,309,556...14,314,759
Ensembl chr12:14,251,941...14,314,118
JBrowse link
mRNA 3'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isy1 ISY1 splicing factor homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188
JBrowse link
G Slu7 SLU7 homolog, splicing factor involved_in ISO
ISS
(PMID:15728250)
PMID:15181151
RGD PMID:15728250 PMID:15181151 RGD:1304333 NCBI chr10:27,908,325...27,923,784
Ensembl chr10:27,908,396...27,923,349
JBrowse link
mRNA 5'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prpf39 pre-mRNA processing factor 39 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:83,088,981...83,113,826
Ensembl chr 6:83,088,986...83,113,825
JBrowse link
G Psip1 PC4 and SFRS1 interacting protein 1 involved_in ISO
ISS
(PMID:9885563)
GO_REF:0000024
RGD
UniProt
PMID:9885563 GO_REF:0000024 NCBI chr 5:97,847,010...97,879,280
Ensembl chr 5:97,847,015...97,879,257
JBrowse link
G Sfswap splicing factor SWAP involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
(MGI:84585|PMID:8940107)
PMID:21873635
Ensembl
RGD
PMID:8940107 PMID:21873635 GO_REF:0000107 MGI:84585, RGD:13792537 NCBI chr12:27,109,607...27,179,941
Ensembl chr12:27,109,611...27,179,884
JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:5,888,453...5,906,638
Ensembl chr20:5,888,453...5,906,638
JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in ISO (PMID:8940107), (PMID:9885563) RGD PMID:8940107 PMID:9885563 NCBI chr10:72,838,926...72,859,066
Ensembl chr10:72,839,274...72,845,336
JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 involved_in ISO (PMID:11684676) RGD PMID:11684676 NCBI chr 5:47,606,526...47,631,509
Ensembl chr 5:47,606,285...47,629,778
JBrowse link
mRNA splice site selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP, Elav-like family member 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:1930458|PMID:11158314)
(PMID:11158314)
RGD PMID:11158314 PMID:21873635 MGI:1930458, RGD:13792537 NCBI chr 3:76,924,591...76,999,429
Ensembl chr 3:76,924,613...76,999,426
JBrowse link
G Celf2 CUGBP, Elav-like family member 2 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:11158314)
(MGI:1930458|PMID:11158314)
PMID:21873635
RGD PMID:11158314 PMID:21873635 MGI:1930458, RGD:13792537 NCBI chr17:70,904,462...71,729,072
Ensembl chr17:71,210,853...71,728,333
JBrowse link
G Celf3 CUGBP, Elav-like family member 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:182,116,034...182,130,163
Ensembl chr 2:182,116,073...182,130,163
JBrowse link
G Celf4 CUGBP, Elav-like family member 4 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:1930458|PMID:11158314)
RGD PMID:11158314 PMID:21873635 MGI:1930458, RGD:13792537 NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786
JBrowse link
G Celf5 CUGBP, Elav-like family member 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:8,225,787...8,250,322
Ensembl chr 7:8,225,825...8,250,322
JBrowse link
G Celf6 CUGBP, Elav-like family member 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:59,975,095...60,006,060
Ensembl chr 8:59,975,088...60,005,041
JBrowse link
G Khdc4 KH domain containing 4, pre-mRNA splicing factor involved_in ISO (PMID:19641227) RGD PMID:19641227 NCBI chr 2:174,149,059...174,177,816
Ensembl chr 2:174,149,141...174,177,504
JBrowse link
G Luc7l LUC7-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:15,273,340...15,307,131
Ensembl chr10:15,273,348...15,303,112
JBrowse link
G Luc7l3 LUC7-like 3 pre-mRNA splicing factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:79,240,050...79,276,555
Ensembl chr10:79,240,563...79,276,538
JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 acts_upstream_of_or_within ISO MGI:3052922 (MGI:2682447|PMID:14671308), (MGI:3655436|PMID:16717059) RGD PMID:14671308 PMID:16717059 MGI:2682447 MGI:3655436 NCBI chr 2:144,639,819...144,814,395
Ensembl chr 2:144,670,285...144,814,368
JBrowse link
G Nol3 nucleolar protein 3 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:10196175)
UniProt
Ensembl
RGD
PMID:10196175 GO_REF:0000024 GO_REF:0000107 NCBI chr19:33,154,061...33,158,250
Ensembl chr19:33,154,062...33,158,250
JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 acts_upstream_of_or_within ISO MGI:4124189 (MGI:1859428|PMID:10829067), (MGI:5430666|PMID:22802532) RGD PMID:10829067 PMID:22802532 MGI:1859428 MGI:5430666 NCBI chr 2:207,812,659...207,874,019
Ensembl chr 2:207,812,920...207,873,506
JBrowse link
G Puf60 poly-U binding splicing factor 60 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:107,782,770...107,793,814
Ensembl chr 7:107,782,770...107,794,531
JBrowse link
G Rbmx RNA binding motif protein, X-linked IMP RGD PMID:19282290 RGD:2316827 NCBI chr  X:135,305,237...135,314,806
Ensembl chr  X:135,305,325...135,314,743
JBrowse link
G Rbmxl1 Rbmx like 1 involved_in IDA PMID:19282290 UniProt PMID:19282290 RGD:2316827 NCBI chr19:29,407,902...29,411,519
Ensembl chr19:29,407,912...29,412,859
JBrowse link
G Setx senataxin involved_in ISO (PMID:19515850) RGD PMID:19515850 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in ISO (PMID:9774382) RGD PMID:9774382 NCBI chr 5:148,088,765...148,102,964
Ensembl chr 5:148,088,823...148,101,768
JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in IBA
ISO
ISS
PMID:21873635
(PMID:12549914)
GO_REF:0000024
RGD
UniProt
PMID:12549914 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:151,589,546...151,594,869
Ensembl chr 3:151,589,535...151,594,860
JBrowse link
G Ythdc1 YTH domain containing 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:20167602)
UniProt
RGD
PMID:20167602 GO_REF:0000024 NCBI chr14:21,185,438...21,215,934
Ensembl chr14:21,185,440...21,216,028
JBrowse link
negative regulation of formation of translation preinitiation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl13a ribosomal protein L13A involved_in ISO
ISS
(PMID:17218275)
GO_REF:0000024
RGD
UniProt
PMID:17218275 GO_REF:0000024 NCBI chr 1:95,609,374...95,612,557
Ensembl chr 1:95,609,370...95,620,463
JBrowse link
positive regulation of telomerase catalytic core complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO (PMID:26586433) RGD PMID:26586433 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Atr ATR serine/threonine kinase involved_in ISO (PMID:26586433) RGD PMID:26586433 NCBI chr 8:96,426,704...96,524,152
Ensembl chr 8:96,426,724...96,524,136
JBrowse link
recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656
JBrowse link
G Polr2d RNA polymerase II subunit D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:23,418,097...23,425,228
Ensembl chr18:23,418,097...23,425,228
JBrowse link
recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ramac RNA guanine-7 methyltransferase activating subunit involved_in IBA
ISO
PMID:21873635
(PMID:22099306)
RGD PMID:22099306 PMID:21873635 RGD:13792537 NCBI chr 1:135,708,529...135,714,417
Ensembl chr 1:135,708,535...135,722,151
JBrowse link
ribonucleoprotein complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ckap5 cytoskeleton associated protein 5 acts_upstream_of_or_within ISO MGI:2177650|MGI:5570192 (MGI:5546446|PMID:23936366) RGD PMID:23936366 MGI:5546446 NCBI chr 3:77,491,195...77,593,300
Ensembl chr 3:77,491,276...77,593,264
JBrowse link
G LOC680353 similar to 60S ribosomal protein L38 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:68,969,607...68,969,819
Ensembl chr  X:68,969,607...68,969,819
JBrowse link
G LOC680512 similar to 60S ribosomal protein L38 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:67,435,131...67,435,363
Ensembl chr18:67,435,134...67,435,346
JBrowse link
G LOC685963 similar to 60S ribosomal protein L38 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:155,980,656...155,981,001
Ensembl chr 3:155,980,625...155,981,036
JBrowse link
G LOC690468 similar to 60S ribosomal protein L38 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:184,905,148...184,905,484
Ensembl chr 2:184,905,204...184,905,416
JBrowse link
G LOC690597 similar to 60S ribosomal protein L38 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:143,285,738...143,286,894
Ensembl chr 3:143,286,247...143,286,435
JBrowse link
G RGD1561636 similar to 60S ribosomal protein L38 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:60,296,358...60,296,687
Ensembl chr 4:60,296,410...60,296,622
JBrowse link
G Rpl38 ribosomal protein L38 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:99,701,330...99,705,004
Ensembl chr10:99,701,362...99,705,004
JBrowse link
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor involved_in ISO (PMID:19383767) RGD PMID:19383767 NCBI chr 4:133,213,357...133,305,586
Ensembl chr 4:133,213,361...133,305,586
JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in ISO (MGI:6490747|PMID:33230114) RGD PMID:33230114 MGI:6490747 NCBI chr 4:170,646,042...170,660,291
Ensembl chr 4:170,646,001...170,660,828
JBrowse link
ribosomal large subunit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07018050.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:31,302,329...31,302,979 JBrowse link
G AC120310.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:15,111,186...15,112,040 JBrowse link
G AC123138.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:46,146,917...46,147,919 JBrowse link
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO (PMID:24120868) RGD PMID:24120868 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931
JBrowse link
G Brix1 biogenesis of ribosomes BRX1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:59,450,608...59,461,486
Ensembl chr 2:59,450,614...59,461,495
JBrowse link
G LOC100911018 60S ribosomal protein L6-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:15,111,153...15,112,082
Ensembl chr17:15,111,186...15,112,040
JBrowse link
G LOC108352551 60S ribosomal protein L23a pseudogene involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:63,894,996...63,895,471
Ensembl chr13:63,894,996...63,895,466
JBrowse link
G LOC680441 similar to 60S ribosomal protein L23a involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:149,492,385...149,492,849
Ensembl chr 4:149,492,385...149,492,849
JBrowse link
G LOC690335 similar to 60S ribosomal protein L23a involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:91,707,271...91,707,812
Ensembl chr15:31,302,329...31,302,979
JBrowse link
G Mdn1 midasin AAA ATPase 1 involved_in ISO
IBA
(PMID:27814492)
PMID:21873635
RGD PMID:27814492 PMID:21873635 RGD:13792537 NCBI chr 5:47,055,435...47,190,426
Ensembl chr 5:47,055,447...47,186,332
JBrowse link
G Mrpl20 mitochondrial ribosomal protein L20 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:166,408,962...166,413,492
Ensembl chr 5:166,408,962...166,413,492
JBrowse link
G Mrto4 mRNA turnover 4, ribosome maturation factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:151,601,780...151,608,549
Ensembl chr 5:151,601,780...151,608,287
JBrowse link
G Nop2 NOP2 nucleolar protein involved_in ISO (PMID:24120868) RGD PMID:24120868 NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459
JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO
IBA
(PMID:24120868)
PMID:21873635
RGD PMID:24120868 PMID:21873635 RGD:13792537 NCBI chr 1:76,629,084...76,636,902
Ensembl chr 1:76,629,069...76,636,902
JBrowse link
G Ppan peter pan homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:19,423,908...19,427,941
Ensembl chr 8:19,423,961...19,427,938
JBrowse link
G RGD1564606 similar to 60S ribosomal protein L23a involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:38,452,814...38,453,384
Ensembl chr 2:38,451,401...38,453,417
JBrowse link
G RGD1565170 similar to 60S ribosomal protein L23a involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:31,302,164...31,302,986
Ensembl chr15:31,302,329...31,302,979
JBrowse link
G Rpf2 ribosome production factor 2 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:43,630,003...43,651,477
Ensembl chr20:43,629,951...43,651,509
JBrowse link
G Rpl10 ribosomal protein L10 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:152,054,547...152,056,757
Ensembl chr  X:152,054,452...152,056,761
JBrowse link
G Rpl10l ribosomal protein L10-like involved_in ISO (MGI:6835429|PMID:28502657) RGD PMID:28502657 MGI:6835429 NCBI chr 6:84,544,771...84,545,863
Ensembl chr 6:84,543,540...84,545,816
JBrowse link
G Rpl11 ribosomal protein L11 involved_in ISO (PMID:24120868) RGD PMID:24120868 NCBI chr 5:148,274,060...148,277,708
Ensembl chr 5:148,274,069...148,277,599
JBrowse link
G Rpl23a ribosomal protein L23A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:63,076,660...63,079,346
Ensembl chr10:63,076,066...63,079,346
JBrowse link
G Rpl24 ribosomal protein L24 acts_upstream_of_or_within ISO MGI:1856685 (MGI:3051697|PMID:15289434) RGD PMID:15289434 MGI:3051697 NCBI chr11:44,653,937...44,659,346
Ensembl chr11:44,653,937...44,659,370
JBrowse link
G Rpl5 ribosomal protein L5 involved_in ISO
IBA
(PMID:24120868)
PMID:21873635
RGD PMID:24120868 PMID:21873635 RGD:13792537 NCBI chr14:1,843,856...1,850,301
Ensembl chr14:1,843,770...1,850,290
JBrowse link
G Rpl6 ribosomal protein L6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:35,347,493...35,352,011
Ensembl chr12:35,347,497...35,351,921
JBrowse link
G Rplp0 ribosomal protein lateral stalk subunit P0 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:41,054,363...41,057,632
Ensembl chr12:41,054,179...41,057,632
JBrowse link
G Rplp0l1 ribosomal protein lateral stalk subunit P0 like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:191,921,503...191,922,661
Ensembl chr 2:191,921,574...191,922,646
JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog involved_in ISO
ISS
(PMID:24120868)
GO_REF:0000024
RGD
UniProt
PMID:24120868 GO_REF:0000024 NCBI chr 5:9,733,486...9,735,119
Ensembl chr 5:9,733,091...9,735,140
JBrowse link
ribosomal small subunit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07005506.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:168,338,500...168,339,520 JBrowse link
G AABR07005886.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:186,877,655...186,881,977 JBrowse link
G AABR07028859.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:84,754,643...84,755,185 JBrowse link
G AABR07040944.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:107,697,440...107,698,439 JBrowse link
G AABR07056611.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:25,964,209...25,964,541 JBrowse link
G AC128207.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:966,426...966,860 JBrowse link
G Eral1 Era-like 12S mitochondrial rRNA chaperone 1 involved_in ISO
IBA
ISS
(PMID:20604745), (PMID:28449065)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20604745 PMID:28449065 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:62,961,729...62,968,766
Ensembl chr10:62,961,730...62,968,994
JBrowse link
G Fau FAU ubiquitin like and ribosomal protein S30 fusion involved_in ISO (PMID:34318747) RGD PMID:34318747 NCBI chr 1:203,350,226...203,351,741
Ensembl chr 1:203,350,189...203,351,742
JBrowse link
G LOC100359503 ribosomal protein S28-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:65,888,391...65,888,702
Ensembl chr16:65,888,416...65,888,625
JBrowse link
G LOC100360843 ribosomal protein S19-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:76,610,075...76,610,605
Ensembl chr 1:76,610,099...76,610,606
JBrowse link
G LOC100362987 ribosomal protein S27-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:1,154,781...1,157,065
Ensembl chr 9:1,154,987...1,155,443
JBrowse link
G LOC100911847 40S ribosomal protein S14-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:138,350,191...138,350,766 JBrowse link
G LOC108348601 40S ribosomal protein S19 pseudogene involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:84,754,704...84,755,185
Ensembl chr17:84,754,643...84,755,185
JBrowse link
G LOC108353424 40S ribosomal protein S28 pseudogene involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:12,825,455...12,825,905
Ensembl chr20:12,825,606...12,825,815
JBrowse link
G LOC120095010 40S ribosomal protein S19-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:2,641,423...2,645,350
Ensembl chr10:2,642,638...2,643,075
JBrowse link
G LOC120101650 40S ribosomal protein S14-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:112,838,842...112,839,309
Ensembl chr 3:112,838,854...112,839,309
JBrowse link
G LOC500594 LRRGT00162 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:162,961,708...162,966,537
Ensembl chr 5:162,961,708...162,966,537
JBrowse link
G Mrps11 mitochondrial ribosomal protein S11 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:132,707,601...132,717,253
Ensembl chr 1:132,680,420...132,717,253
JBrowse link
G Mrps7 mitochondrial ribosomal protein S7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:100,843,691...100,846,838
Ensembl chr10:100,843,356...100,847,129
JBrowse link
G Pwp2 PWP2, small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:10,499,332...10,512,965
Ensembl chr20:10,499,363...10,513,640
JBrowse link
G Rps10 ribosomal protein S10 IMP RGD PMID:3378620 RGD:2299075 NCBI chr20:5,694,313...5,698,922
Ensembl chr20:5,694,313...5,699,044
JBrowse link
G Rps14 ribosomal protein S14 involved_in IMP
IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:9152021)
UniProt
RGD
PMID:9152021 PMID:3378620 PMID:21873635 GO_REF:0000024, RGD:2299075, RGD:13792537 NCBI chr18:54,227,854...54,232,638
Ensembl chr18:54,227,854...54,233,166
JBrowse link
G Rps15 ribosomal protein S15 involved_in IMP
IBA
PMID:21873635 RGD
GO_Central
PMID:3378620 PMID:21873635 RGD:2299075, RGD:13792537 NCBI chr 7:9,416,003...9,417,442
Ensembl chr 7:9,416,004...9,417,450
JBrowse link
G Rps15-ps2 ribosomal protein S15, pseudogene 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:966,395...966,881 JBrowse link
G Rps19 ribosomal protein S19 involved_in IBA
ISO
PMID:21873635
(PMID:17053056)
RGD PMID:17053056 PMID:21873635 RGD:13792537 NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508
JBrowse link
G Rps19l1 ribosomal protein S19-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:102,435,651...102,436,177
Ensembl chr 7:102,435,666...102,436,278
JBrowse link
G Rps2 ribosomal protein S2 IMP RGD PMID:3378620 RGD:2299075 NCBI chr10:13,747,316...13,749,165
Ensembl chr10:13,747,301...13,749,163
JBrowse link
G Rps25 ribosomal protein s25 IMP RGD PMID:3378620 RGD:2299075 NCBI chr 8:44,733,623...44,735,999
Ensembl chr 8:44,733,029...44,737,271
JBrowse link
G Rps27 ribosomal protein S27 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:175,665,858...175,666,963
Ensembl chr 2:175,665,853...175,666,964
JBrowse link
G Rps27l ribosomal protein S27-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:67,562,483...67,567,418
Ensembl chr 8:67,562,483...67,567,418
JBrowse link
G Rps28 ribosomal protein S28 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170
JBrowse link
G Rps5 ribosomal protein S5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:73,538,776...73,543,073
Ensembl chr 1:73,538,776...73,543,073
JBrowse link
G Rps6 ribosomal protein S6 IMP RGD PMID:3378620 RGD:2299075 NCBI chr 5:101,371,716...101,374,576
Ensembl chr 5:101,371,136...101,374,602
Ensembl chr 5:101,371,136...101,374,602
JBrowse link
G Rpsa ribosomal protein SA involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:119,851,225...119,855,103
Ensembl chr 8:119,851,225...119,855,247
JBrowse link
G Rrp7a ribosomal RNA processing 7 homolog A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:114,262,929...114,272,817
Ensembl chr 7:114,256,472...114,272,817
JBrowse link
RISC complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific acts_upstream_of_or_within ISO (PMID:23622242) RGD PMID:23622242 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282
JBrowse link
G Ago1 argonaute RISC component 1 involved_in ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:138,722,111...138,757,118
Ensembl chr 5:138,722,111...138,773,546
JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in ISO
IEA
(PMID:16271387), (PMID:18178619), (PMID:19966796), (PMID:23661684)
GO_REF:0000107
(PMID:19701182), (PMID:19966796)
RGD
Ensembl
PMID:16271387 PMID:18178619 PMID:19701182 PMID:19966796 PMID:23661684 GO_REF:0000107 NCBI chr 7:105,018,202...105,105,120
Ensembl chr 7:105,029,120...105,104,974
JBrowse link
G Ago3 argonaute RISC catalytic component 3 involved_in ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230
JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:138,780,450...138,825,889
Ensembl chr 5:138,783,069...138,825,632
JBrowse link
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in ISO
ISS
(PMID:17495927)
GO_REF:0000024
RGD
UniProt
PMID:17495927 GO_REF:0000024 NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421
JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:17531811) RGD PMID:17531811 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069
JBrowse link
G Dicer1 dicer 1 ribonuclease III involved_in ISO (PMID:16271387), (PMID:18178619), (PMID:23661684)
(PMID:15973356), (PMID:18178619)
RGD PMID:15973356 PMID:16271387 PMID:18178619 PMID:23661684 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 involved_in ISO (PMID:23661684) RGD PMID:23661684 NCBI chr 3:61,575,447...61,594,393
Ensembl chr 3:61,575,447...61,594,347
JBrowse link
G Tarbp2 Tarbp2 subunit of RISC loading complex involved_in ISO (PMID:16271387), (PMID:18178619)
(PMID:15973356), (PMID:18178619)
RGD PMID:15973356 PMID:16271387 PMID:18178619 NCBI chr 7:133,649,118...133,654,306
Ensembl chr 7:133,649,090...133,654,314
JBrowse link
small-subunit processome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in ISO (PMID:32103174) RGD PMID:32103174 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 involved_in ISO (PMID:32103174) RGD PMID:32103174 NCBI chr 9:73,955,220...74,044,020
Ensembl chr 9:73,955,216...74,044,018
JBrowse link
spliceosomal complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crnkl1 crooked neck pre-mRNA splicing factor 1 involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:12084575)
UniProt
RGD
PMID:12084575 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:133,338,593...133,354,329
Ensembl chr 3:133,337,039...133,354,302
JBrowse link
G Ddx39b DExD-box helicase 39B involved_in ISO (PMID:18593880) RGD PMID:18593880 NCBI chr20:3,547,702...3,585,064
Ensembl chr20:3,572,056...3,584,996
JBrowse link
G Gcfc2 GC-rich sequence DNA-binding factor 2 involved_in ISO (PMID:24304693) RGD PMID:24304693 NCBI chr 4:114,481,613...114,519,268
Ensembl chr 4:114,481,607...114,519,962
JBrowse link
G Gemin2 gem (nuclear organelle) associated protein 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:76,706,424...76,721,154
Ensembl chr 6:76,707,523...76,721,153
JBrowse link
G Gemin6 gem (nuclear organelle) associated protein 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:14,786,086...14,790,631
Ensembl chr 6:14,786,070...14,790,612
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:23793891) RGD PMID:23793891 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089
JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in ISO (PMID:16332694) RGD PMID:16332694 NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662
JBrowse link
G Rbm5 RNA binding motif protein 5 involved_in ISS
ISO
GO_REF:0000024
(PMID:18951082)
UniProt
RGD
PMID:18951082 GO_REF:0000024 NCBI chr 8:108,420,220...108,449,481
Ensembl chr 8:108,420,222...108,449,430
JBrowse link
G Scaf11 SR-related CTD-associated factor 11 involved_in IBA
ISO
PMID:21873635
(PMID:9447963)
RGD PMID:9447963 PMID:21873635 RGD:13792537 NCBI chr 7:127,571,678...127,623,915
Ensembl chr 7:127,574,463...127,624,101
JBrowse link
G Sf3a2 splicing factor 3A subunit 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:8,909,507...8,916,104
Ensembl chr 7:8,909,507...8,915,530
JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:56,492,403...56,532,300
Ensembl chr 9:56,492,403...56,532,300
JBrowse link
G Smn1 survival of motor neuron 1, telomeric involved_in ISO (PMID:9845364) RGD PMID:9845364 NCBI chr 2:31,490,018...31,501,065
Ensembl chr 2:31,490,015...31,501,060
JBrowse link
G Srpk1 SRSF protein kinase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:6,645,809...6,682,448
Ensembl chr20:6,645,809...6,682,134
JBrowse link
G Srpk2 SRSF protein kinase 2 involved_in IBA
ISO
PMID:21873635
(MGI:1195449|PMID:9446799)
(PMID:9472028)
RGD PMID:9446799 PMID:9472028 PMID:21873635 MGI:1195449, RGD:13792537 NCBI chr 4:11,464,684...11,655,993
Ensembl chr 4:11,464,674...11,655,990
JBrowse link
G Srpk3 SRSF protein kinase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:151,510,452...151,515,208
Ensembl chr  X:151,510,539...151,515,198
JBrowse link
G Usp39 ubiquitin specific peptidase 39 involved_in ISO (PMID:11350945) RGD PMID:11350945 NCBI chr 4:104,373,908...104,406,413
Ensembl chr 4:104,373,955...104,406,359
JBrowse link
G Zrsr2 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 involved_in ISO (PMID:21041408) RGD PMID:21041408 NCBI chr  X:30,547,424...30,571,613
Ensembl chr  X:30,547,536...30,570,125
JBrowse link
spliceosomal complex disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx8 DEAH-box helicase 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:86,667,641...86,705,454
Ensembl chr10:86,667,834...86,705,137
JBrowse link
G Dnajc17 DnaJ heat shock protein family (Hsp40) member C17 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:106,162,197...106,195,771
Ensembl chr 3:106,162,197...106,195,751
JBrowse link
G Tfip11 tuftelin interacting protein 11 involved_in ISO
ISS
IBA
(PMID:19103666)
(MGI:5545993|PMID:19857462)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:19103666 PMID:19857462 PMID:21873635 GO_REF:0000024 MGI:5545993, RGD:13792537 NCBI chr12:44,299,619...44,311,851
Ensembl chr12:44,299,622...44,311,855
JBrowse link
spliceosomal snRNP assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042226.1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr  X:144,806,986...144,812,552 JBrowse link
G Clns1a chloride nucleotide-sensitive channel 1A involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000002
(PMID:18984161)
UniProt
InterPro
RGD
PMID:18984161 GO_REF:0000002 GO_REF:0000024 NCBI chr 1:152,019,369...152,039,670
Ensembl chr 1:152,019,378...152,039,661
JBrowse link
G Coil coilin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:73,789,077...73,810,378
Ensembl chr10:73,789,488...73,810,393
JBrowse link
G Ddx20 DEAD-box helicase 20 involved_in ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161 PMID:21873635 RGD:13792537 NCBI chr 2:193,158,761...193,168,484
Ensembl chr 2:193,158,823...193,166,774
JBrowse link
G Gemin2 gem (nuclear organelle) associated protein 2 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:18984161), (PMID:31799625)
UniProt
RGD
PMID:18984161 PMID:31799625 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 6:76,706,424...76,721,154
Ensembl chr 6:76,707,523...76,721,153
JBrowse link
G Gemin4 gem (nuclear organelle) associated protein 4 involved_in ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161 PMID:21873635 RGD:13792537 NCBI chr10:61,062,420...61,073,529
Ensembl chr10:61,066,425...61,073,431
Ensembl chr10:61,066,425...61,073,431
JBrowse link
G Gemin5 gem (nuclear organelle) associated protein 5 involved_in ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161 PMID:21873635 RGD:13792537 NCBI chr10:42,295,729...42,342,902
Ensembl chr10:42,297,515...42,342,892
JBrowse link
G Gemin6 gem (nuclear organelle) associated protein 6 involved_in ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161 PMID:21873635 RGD:13792537 NCBI chr 6:14,786,086...14,790,631
Ensembl chr 6:14,786,070...14,790,612
JBrowse link
G Gemin7 gem (nuclear organelle) associated protein 7 involved_in ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161 PMID:21873635 RGD:13792537 NCBI chr 1:79,215,054...79,228,769
Ensembl chr 1:79,214,919...79,224,994
JBrowse link
G Gemin7l1 gem (nuclear organelle) associated protein 7-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:78,269,895...78,270,697
Ensembl chr 4:78,269,888...78,270,669
JBrowse link
G Gemin8 gem (nuclear organelle) associated protein 8 involved_in ISO
IBA
(PMID:16434402), (PMID:18984161)
PMID:21873635
RGD PMID:16434402 PMID:18984161 PMID:21873635 RGD:13792537 NCBI chr  X:28,259,806...28,278,641
Ensembl chr  X:28,259,793...28,278,663
JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:18,755,481...18,761,106
Ensembl chr16:18,755,484...18,760,926
JBrowse link
G Prmt5 protein arginine methyltransferase 5 involved_in ISO (PMID:17709427) RGD PMID:17709427 NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296
JBrowse link
G Prmt7 protein arginine methyltransferase 7 involved_in ISO
ISS
(PMID:17709427)
GO_REF:0000024
RGD
UniProt
PMID:17709427 GO_REF:0000024 NCBI chr19:34,110,724...34,161,531
Ensembl chr19:34,110,747...34,162,577
JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in
NOT|involved_in
ISO (PMID:14749385), (PMID:15314151)
(PMID:15314151)
RGD PMID:14749385 PMID:15314151 NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038
JBrowse link
G Smn1 survival of motor neuron 1, telomeric involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:18984161)
UniProt
RGD
PMID:18984161 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 2:31,490,018...31,501,065
Ensembl chr 2:31,490,015...31,501,060
JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 involved_in ISO
ISS
(PMID:18984161)
GO_REF:0000024
RGD
UniProt
PMID:18984161 GO_REF:0000024 NCBI chr 3:117,369,816...117,379,344
Ensembl chr 3:117,370,100...117,379,339
JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in ISO (PMID:8972845) RGD PMID:8972845 NCBI chr20:5,888,453...5,906,638
Ensembl chr20:5,888,453...5,906,638
JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide involved_in ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161 PMID:21873635 RGD:13792537 NCBI chr18:1,696,838...1,707,400
Ensembl chr18:1,696,852...1,708,256
JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide involved_in ISO (PMID:18984161) RGD PMID:18984161 NCBI chr 1:78,798,377...78,801,227
Ensembl chr 1:78,798,377...78,803,351
JBrowse link
G Snrpd2l small nuclear ribonucleoprotein D2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:27,253,384...27,253,841
Ensembl chr20:27,253,424...27,253,780
JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide involved_in ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161 PMID:21873635 RGD:13792537 NCBI chr20:13,130,112...13,145,947
Ensembl chr20:13,130,119...13,145,978
JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E involved_in ISO (PMID:18984161) RGD PMID:18984161 NCBI chr13:45,050,986...45,057,231
Ensembl chr13:45,050,986...45,057,310
JBrowse link
G Snrpel1 small nuclear ribonucleoprotein polypeptide E like1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:120,416,620...120,417,066
Ensembl chr 8:120,416,603...120,417,059
JBrowse link
G Snrpepl2 small nuclear ribonucleoprotein polypeptide E like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:133,709,656...133,710,137
Ensembl chr 1:133,709,797...133,710,075
JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F involved_in ISO (PMID:18984161) RGD PMID:18984161 NCBI chr 7:28,130,427...28,137,129
Ensembl chr 7:28,130,427...28,137,129
JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G involved_in ISO (PMID:18984161) RGD PMID:18984161 NCBI chr 4:118,812,278...118,819,827
Ensembl chr 4:118,812,252...118,819,826
JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:18984161)
UniProt
RGD
PMID:18984161 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 4:170,646,042...170,660,291
Ensembl chr 4:170,646,001...170,660,828
JBrowse link
G Tdrd6 tudor domain containing 6 involved_in ISO (MGI:5904379|PMID:28263986) RGD PMID:28263986 MGI:5904379 NCBI chr 9:17,344,033...17,359,348
Ensembl chr 9:17,344,026...17,359,344
JBrowse link
spliceosomal tri-snRNP complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aar2 AAR2 splicing factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:145,057,368...145,079,838
Ensembl chr 3:145,057,458...145,080,166
JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:10523320) RGD PMID:10523320 NCBI chr20:3,843,467...3,847,217
Ensembl chr20:3,843,466...3,847,266
JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in ISS
ISO
GO_REF:0000024
(PMID:20595234)
UniProt
RGD
PMID:20595234 GO_REF:0000024 NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662
JBrowse link
G Prpf3 pre-mRNA processing factor 3 involved_in ISO (PMID:20595234) RGD PMID:20595234 NCBI chr 2:183,379,041...183,403,526
Ensembl chr 2:183,378,718...183,403,489
JBrowse link
G Prpf31 pre-mRNA processing factor 31 involved_in
acts_upstream_of_or_within
ISO (PMID:15257298)
(PMID:11867543)
RGD PMID:11867543 PMID:15257298 NCBI chr 1:65,575,887...65,587,561
Ensembl chr 1:65,575,887...65,587,873
JBrowse link
G Prpf6 pre-mRNA processing factor 6 involved_in IBA
ISO
PMID:21873635
(PMID:15257298)
RGD PMID:15257298 PMID:21873635 RGD:13792537 NCBI chr 3:168,706,952...168,771,191
Ensembl chr 3:168,704,299...168,774,991
JBrowse link
G Prpf8 pre-mRNA processing factor 8 involved_in IBA
ISO
PMID:21873635
(PMID:20595234)
RGD PMID:20595234 PMID:21873635 RGD:13792537 NCBI chr10:60,331,494...60,354,606
Ensembl chr10:60,331,494...60,354,606
JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:12032085), (PMID:20595234) RGD PMID:12032085 PMID:20595234 NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038
JBrowse link
G Usp4 ubiquitin specific peptidase 4 involved_in ISS
ISO
GO_REF:0000024
(PMID:20595234)
UniProt
RGD
PMID:20595234 GO_REF:0000024 NCBI chr 8:109,035,402...109,080,427
Ensembl chr 8:109,036,099...109,080,427
JBrowse link
spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:114,428,854...114,458,194
Ensembl chr 3:114,428,854...114,458,182
JBrowse link
stress granule disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dyrk3 dual specificity tyrosine phosphorylation regulated kinase 3 involved_in IBA
IEA
ISS
ISO
PMID:21873635
GO_REF:0000107
GO_REF:0000024
(PMID:23415227), (PMID:29973724)
Ensembl
UniProt
RGD
PMID:23415227 PMID:29973724 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr13:42,594,120...42,604,898
Ensembl chr13:42,594,121...42,604,778
JBrowse link
G Kif5b kinesin family member 5B involved_in ISO (MGI:4397616|PMID:19825938) RGD PMID:19825938 MGI:4397616 NCBI chr17:51,489,873...51,527,508
Ensembl chr17:51,489,944...51,527,508
JBrowse link
G Klc1 kinesin light chain 1 involved_in ISO (MGI:4397616|PMID:19825938) RGD PMID:19825938 MGI:4397616 NCBI chr 6:130,823,416...130,866,729
Ensembl chr 6:130,823,419...130,867,031
JBrowse link
G Vcp valosin-containing protein involved_in ISO
ISS
(PMID:29804830)
GO_REF:0000024
RGD
UniProt
PMID:29804830 GO_REF:0000024 NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571
JBrowse link
G Zfand1 zinc finger AN1-type containing 1 involved_in ISO
IBA
(PMID:29804830)
PMID:21873635
RGD PMID:29804830 PMID:21873635 RGD:13792537 NCBI chr 2:91,444,431...91,457,518
Ensembl chr 2:91,444,508...91,453,246
JBrowse link
telomerase holoenzyme complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 involved_in ISO (PMID:10197982) RGD PMID:10197982 NCBI chr 6:129,702,376...129,707,907
Ensembl chr 6:129,702,383...129,707,268
JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in ISO (PMID:10197982) RGD PMID:10197982 NCBI chr 9:15,432,986...15,438,358
Ensembl chr 9:15,433,691...15,438,488
JBrowse link
G Naf1 nuclear assembly factor 1 ribonucleoprotein involved_in ISO (PMID:27510903) RGD PMID:27510903 NCBI chr16:22,837,586...22,868,293
Ensembl chr16:22,837,588...22,868,293
JBrowse link
G Ptges3 prostaglandin E synthase 3 involved_in ISO
IBA
(PMID:10197982)
(MGI:5819359|PMID:10197982)
PMID:21873635
RGD PMID:10197982 PMID:21873635 MGI:5819359, RGD:13792537 NCBI chr 7:490,698...507,759
Ensembl chr 7:490,656...508,084
JBrowse link
G Ptges3l1 prostaglandin E synthase 3-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:42,215,200...42,224,472
Ensembl chr  X:42,214,756...42,225,047
JBrowse link
U2-type prespliceosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sf3a1 splicing factor 3A subunit 1 involved_in ISO (PMID:10882114), (PMID:11533230) RGD PMID:10882114 PMID:11533230 NCBI chr14:79,031,394...79,052,144
Ensembl chr14:79,031,394...79,052,144
JBrowse link
G Sf3a2 splicing factor 3A subunit 2 involved_in ISO
ISS
(PMID:11533230)
GO_REF:0000024
RGD
UniProt
PMID:11533230 GO_REF:0000024 NCBI chr 7:8,909,507...8,916,104
Ensembl chr 7:8,909,507...8,915,530
JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 involved_in ISO (PMID:11533230) RGD PMID:11533230 NCBI chr 5:136,967,713...136,987,345
Ensembl chr 5:136,967,691...136,987,361
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18734
    cellular process 17431
      cellular component organization or biogenesis 6532
        cellular component organization 6307
          protein-containing complex organization 1761
            ribonucleoprotein complex subunit organization 227
              protein-RNA complex remodeling 0
              ribonucleoprotein complex assembly + 219
              ribonucleoprotein complex disassembly + 8
paths to the root