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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of podosome assembly
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Accession:GO:0071801 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of podosome assembly.
Comment:Note that the assembly is regulated by several small GTPases of the Rab and Rho families.


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regulation of podosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gsn gelsolin involved_in ISO (PMID:24236012) RGD PMID:24236012 NCBI chr 3:14,456,106...14,508,922
Ensembl chr 3:14,467,330...14,508,911
JBrowse link
G Hck HCK proto-oncogene, Src family tyrosine kinase involved_in ISO
ISS
(PMID:15998323)
GO_REF:0000024
RGD
UniProt
PMID:15998323 GO_REF:0000024 NCBI chr 3:148,579,917...148,623,026
Ensembl chr 3:148,579,920...148,623,033
JBrowse link
G Kif9 kinesin family member 9 involved_in ISO (PMID:21119006) RGD PMID:21119006 NCBI chr 8:118,737,739...118,795,190
Ensembl chr 8:118,744,229...118,794,992
JBrowse link
negative regulation of podosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef2 Rho/Rac guanine nucleotide exchange factor 2 acts_upstream_of_or_within ISO (MGI:5002438|PMID:21352810) RGD PMID:21352810 MGI:5002438 NCBI chr 2:187,964,100...188,022,847
Ensembl chr 2:187,977,008...188,021,377
JBrowse link
positive regulation of podosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef5 Rho guanine nucleotide exchange factor 5 acts_upstream_of_or_within ISO MGI:1096342|MGI:98397 (MGI:5317222|PMID:21525037) RGD PMID:21525037 MGI:5317222 NCBI chr 4:72,710,775...72,736,415
Ensembl chr 4:72,718,458...72,735,007
JBrowse link
G Arpc2 actin related protein 2/3 complex, subunit 2 IMP RGD PMID:17224451 RGD:2306207 NCBI chr 9:81,518,163...81,548,871
Ensembl chr 9:81,518,176...81,548,871
JBrowse link
G Asap1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3768569|PMID:17893324)
RGD PMID:17893324, PMID:21873635 MGI:3768569, RGD:13792537 NCBI chr 7:104,670,076...104,951,090
Ensembl chr 7:104,669,672...104,801,045
JBrowse link
G Capg capping actin protein, gelsolin like NOT|involved_in ISO (PMID:24236012) RGD PMID:24236012 NCBI chr 4:100,395,693...100,419,447
Ensembl chr 4:100,407,658...100,419,446
JBrowse link
G Csf2 colony stimulating factor 2 involved_in ISO (PMID:15220135) RGD PMID:15220135 NCBI chr10:39,602,089...39,604,070
Ensembl chr10:39,602,089...39,604,070
JBrowse link
G Fscn1 fascin actin-bundling protein 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:20137952)
UniProt
Ensembl
RGD
PMID:20137952 GO_REF:0000024 GO_REF:0000107 NCBI chr12:13,655,459...13,668,595
Ensembl chr12:13,656,554...13,668,515
JBrowse link
G Il5 interleukin 5 involved_in ISO (PMID:15220135) RGD PMID:15220135 NCBI chr10:39,066,716...39,069,587
Ensembl chr10:39,066,716...39,069,587
JBrowse link
G Lcp1 lymphocyte cytosolic protein 1 involved_in ISO (PMID:24236012) RGD PMID:24236012 NCBI chr15:57,170,566...57,277,811
Ensembl chr15:57,221,292...57,277,811
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 acts_upstream_of_or_within ISO (MGI:5576866|PMID:24127566) RGD PMID:24127566 MGI:5576866 NCBI chr16:9,620,854...9,709,342
Ensembl chr16:9,625,177...9,709,347
JBrowse link
G Mapk9 mitogen-activated protein kinase 9 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5576866|PMID:24127566)
Ensembl
RGD
PMID:24127566 GO_REF:0000107 MGI:5576866 NCBI chr10:35,333,859...35,374,364
Ensembl chr10:35,333,859...35,374,355
JBrowse link
G Msn moesin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5576866|PMID:24127566)
Ensembl
RGD
PMID:24127566 GO_REF:0000107 MGI:5576866 NCBI chr  X:65,226,834...65,294,192
Ensembl chr  X:65,226,748...65,295,810
JBrowse link
G Palld palladin, cytoskeletal associated protein IMP RGD PMID:16868024 RGD:2325783 NCBI chr16:31,865,712...31,948,168 JBrowse link
G Rhoa ras homolog family member A acts_upstream_of_or_within ISO MGI:1858952|MGI:98397 (MGI:5317222|PMID:21525037) RGD PMID:21525037 MGI:5317222 NCBI chr 8:117,082,440...117,116,244
Ensembl chr 8:117,106,576...117,116,167
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:1096342|MGI:1858952 (MGI:5317222|PMID:21525037), (MGI:5576866|PMID:24127566) RGD PMID:21525037 PMID:24127566 MGI:5317222 MGI:5576866 NCBI chr 3:153,547,807...153,595,643
Ensembl chr 3:153,580,861...153,595,642
JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:15220135) RGD PMID:15220135 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
Ensembl chr20:5,189,390...5,192,000
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19491
    regulation of biological process 12773
      regulation of cellular process 12275
        regulation of cellular component organization 2590
          regulation of protein-containing complex assembly 468
            regulation of podosome assembly 19
              negative regulation of podosome assembly 1
              positive regulation of podosome assembly 15
Path 2
Term Annotations click to browse term
  biological_process 19491
    cellular process 18343
      cellular component organization or biogenesis 6721
        cellular component organization 6481
          organelle organization 4060
            organelle assembly 956
              podosome assembly 24
                regulation of podosome assembly 19
                  negative regulation of podosome assembly 1
                  positive regulation of podosome assembly 15
paths to the root