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ONTOLOGY REPORT - ANNOTATIONS

Term:endoplasmic reticulum tubular network organization
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Accession:GO:0071786 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum (ER) tubular network. The ER tubular network is the ER part that that has membranes with high curvature in cross-section.
Synonyms:exact_synonym: ER tubular network organisation;   ER tubular network organization;   endoplasmic reticulum tubular network organisation


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endoplasmic reticulum tubular network organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmtn dematin actin binding protein involved_in IEA
ISO		 GO_REF:0000107
(PMID:23060452)		 Ensembl
RGD		 PMID:23060452 GO_REF:0000107 NCBI chr15:45,677,974...45,702,261
Ensembl chr15:45,677,977...45,705,601 		JBrowse link
G Lnpk lunapark, ER junction formation factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:59,418,872...59,487,029
Ensembl chr 3:59,424,286...59,486,518 		JBrowse link
G Rab10 RAB10, member RAS oncogene family involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:23263280), (PMID:24891604)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:23263280 PMID:24891604 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:26,267,081...26,319,739
Ensembl chr 6:26,266,859...26,320,193 		JBrowse link
G Rab18 RAB18, member RAS oncogene family involved_in ISO (PMID:24891604) RGD PMID:24891604 NCBI chr17:54,944,099...54,976,093
Ensembl chr17:54,943,955...54,976,043 		JBrowse link
G Reep1 receptor accessory protein 1 involved_in ISO
IBA		 (PMID:20200447)
GO_REF:0000033		 RGD
GO_Central		 PMID:20200447 GO_REF:0000033 NCBI chr 4:103,746,004...103,862,347
Ensembl chr 4:103,745,633...103,862,338 		JBrowse link
G Reep2 receptor accessory protein 2 involved_in ISO (PMID:24388663) RGD PMID:24388663 NCBI chr18:26,438,130...26,447,165
Ensembl chr18:26,438,346...26,447,161 		JBrowse link
G Reep3 receptor accessory protein 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:21,493,868...21,578,698
Ensembl chr20:21,493,954...21,578,697 		JBrowse link
G Reep4 receptor accessory protein 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:45,620,317...45,623,524
Ensembl chr15:45,619,941...45,623,526 		JBrowse link
G Retreg3 reticulophagy regulator family member 3 involved_in ISO (PMID:33826365) RGD PMID:33826365 NCBI chr10:86,028,767...86,052,575
Ensembl chr10:86,028,774...86,052,692 		JBrowse link
G Rtn3 reticulon 3 involved_in ISO (PMID:18779370) RGD PMID:18779370 NCBI chr 1:204,612,675...204,669,212
Ensembl chr 1:204,612,675...204,669,275 		JBrowse link
G Rtn4 reticulon 4 involved_in ISO
ISS		 (PMID:18779370), (PMID:26906412)
GO_REF:0000024		 RGD
UniProt		 PMID:18779370 PMID:26906412 GO_REF:0000024 NCBI chr14:103,450,074...103,497,687
Ensembl chr14:103,449,930...103,497,686 		JBrowse link
G Tmem170a transmembrane protein 170A involved_in ISO
IBA		 (PMID:26906412)
GO_REF:0000033		 RGD
GO_Central		 PMID:26906412 GO_REF:0000033 NCBI chr19:39,833,947...39,846,807
Ensembl chr19:39,833,980...39,846,783 		JBrowse link
G Tmem33 transmembrane protein 33 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:40,888,485...40,910,715
Ensembl chr14:40,885,712...40,910,715 		JBrowse link
G Use1 unconventional SNARE in the ER 1 acts_upstream_of_or_within ISO MGI:3842569|MGI:3842571 (PMID:19188447) RGD PMID:19188447 NCBI chr16:18,038,284...18,041,826
Ensembl chr16:18,039,173...18,041,826 		JBrowse link
endoplasmic reticulum tubular network formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6ip1 ARL6 interacting reticulophagy regulator 1 involved_in ISO (PMID:24262037) RGD PMID:24262037 NCBI chr 1:172,430,475...172,439,990
Ensembl chr 1:172,430,489...172,439,994 		JBrowse link
G Rtn1 reticulon 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:90,763,212...90,983,436
Ensembl chr 6:90,763,216...90,983,436 		JBrowse link
G Rtn3 reticulon 3 involved_in ISO
IEA
IBA		 (PMID:25612671)
GO_REF:0000107
GO_REF:0000033
(PMID:24262037)		 RGD
Ensembl
GO_Central		 PMID:24262037 PMID:25612671 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:204,612,675...204,669,212
Ensembl chr 1:204,612,675...204,669,275 		JBrowse link
G Rtn4 reticulon 4 involved_in ISO
IBA
ISS
IEA		 (PMID:24262037), (PMID:25612671)
GO_REF:0000033
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
UniProt
Ensembl		 PMID:24262037 PMID:25612671 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr14:103,450,074...103,497,687
Ensembl chr14:103,449,930...103,497,686 		JBrowse link
G Zfyve27 zinc finger FYVE-type containing 27 involved_in ISO
IBA
IEA
ISS		 (PMID:23969831), (PMID:24668814)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000002
GO_REF:0000024		 RGD
GO_Central
Ensembl
InterPro
UniProt		 PMID:23969831 PMID:24668814 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:240,979,831...241,003,193
Ensembl chr 1:240,979,842...241,003,193 		JBrowse link
endoplasmic reticulum tubular network maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lnpk lunapark, ER junction formation factor involved_in ISO (PMID:25548161), (PMID:27619977) RGD PMID:25548161 PMID:27619977 NCBI chr 3:59,418,872...59,487,029
Ensembl chr 3:59,424,286...59,486,518 		JBrowse link
endoplasmic reticulum tubular network membrane organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6ip1 ARL6 interacting reticulophagy regulator 1 involved_in ISO (PMID:24262037) RGD PMID:24262037 NCBI chr 1:172,430,475...172,439,990
Ensembl chr 1:172,430,489...172,439,994 		JBrowse link
G Atl1 atlastin GTPase 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:27619977)		 UniProt
RGD		 PMID:27619977 GO_REF:0000024 NCBI chr 6:88,377,168...88,475,242
Ensembl chr 6:88,377,239...88,475,204 		JBrowse link
G Atl2 atlastin GTPase 2 involved_in ISO (PMID:27619977) RGD PMID:27619977 NCBI chr 6:15,139,071...15,180,421
Ensembl chr 6:15,139,044...15,180,421 		JBrowse link
G Rtn4 reticulon 4 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:27619977)		 Ensembl
UniProt
RGD		 PMID:27619977 GO_REF:0000024 GO_REF:0000107 NCBI chr14:103,450,074...103,497,687
Ensembl chr14:103,449,930...103,497,686 		JBrowse link
positive regulation of endoplasmic reticulum tubular network organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atl3 atlastin GTPase 3 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:27619977)		 UniProt
Ensembl
RGD		 PMID:27619977 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:204,680,958...204,727,360
Ensembl chr 1:204,680,968...204,723,354 		JBrowse link
G Lnpk lunapark, ER junction formation factor involved_in ISO (PMID:24223779), (PMID:25404289) RGD PMID:24223779 PMID:25404289 NCBI chr 3:59,418,872...59,487,029
Ensembl chr 3:59,424,286...59,486,518 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
IEA
ISS		 (PMID:24891604)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
ParkinsonsUK-UCL		 PMID:24891604 GO_REF:0000024 GO_REF:0000107 NCBI chr13:39,355,698...39,429,154
Ensembl chr13:39,352,247...39,429,169 		JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISO
IEA		 (PMID:24891604)
GO_REF:0000107		 RGD
Ensembl		 PMID:24891604 GO_REF:0000107 NCBI chr13:96,757,430...96,828,930
Ensembl chr13:96,757,460...96,829,478 		JBrowse link
regulation of endoplasmic reticulum tubular network organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6ip1 ARL6 interacting reticulophagy regulator 1 involved_in ISO (PMID:24262037) RGD PMID:24262037 NCBI chr 1:172,430,475...172,439,990
Ensembl chr 1:172,430,489...172,439,994 		JBrowse link
G Tmem33 transmembrane protein 33 involved_in ISO
ISS		 (PMID:25612671)
GO_REF:0000024		 RGD
UniProt		 PMID:25612671 GO_REF:0000024 NCBI chr14:40,888,485...40,910,715
Ensembl chr14:40,885,712...40,910,715 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20075
    cellular process 19154
      cellular component organization or biogenesis 7178
        cellular component organization 6923
          endomembrane system organization 578
            endoplasmic reticulum organization 99
              endoplasmic reticulum tubular network organization 22
                endoplasmic reticulum tubular network formation 5
                endoplasmic reticulum tubular network maintenance 1
                endoplasmic reticulum tubular network membrane organization 4
                negative regulation of endoplasmic reticulum tubular network organization 0
                positive regulation of endoplasmic reticulum tubular network organization 4
                regulation of endoplasmic reticulum tubular network organization + 6
paths to the root